Clc08G05930 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G05930
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 17243869 .. 17244546 (+)
RNA-Seq ExpressionClc08G05930
SyntenyClc08G05930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGACTCGTAATTATGTTAATCTCATCACTTATTTGTATTAAGGTTTTTATCTTCTTCTTCCTTTTTTGGTGGATAGGTCTTCCTCTGTTTCATTGTACAAAGAAAACAGAGCATTTTGTGTTTTGGCTTGTTCTTGACAAATTACAAATGTATAATTAAATAAAGTTGTGATTTGTTCTTATTTTAGTGTCATGTGCGAAATTCTGATGGGTATTTGTTGAATCAAAGAGTAGGAGATTGGGGTAATTCAACCAAATTAAAAACAGAGACTTCATTTCTTTTCGGGAAAAA

mRNA sequence

ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGACTCGTAATTATGTTAATCTCATCACTTATTTGTATTAAGGTTTTTATCTTCTTCTTCCTTTTTTGGTGGATAGGTCTTCCTCTGTTTCATTGTACAAAGAAAACAGAGCATTTTGTGTTTTGGCTTGTTCTTGACAAATTACAAATGTATAATTAAATAAAGTTGTGATTTGTTCTTATTTTAGTGTCATGTGCGAAATTCTGATGGGTATTTGTTGAATCAAAGAGTAGGAGATTGGGGTAATTCAACCAAATTAAAAACAGAGACTTCATTTCTTTTCGGGAAAAA

Coding sequence (CDS)

ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGA

Protein sequence

MSILNKWNGGFRVLIYLTKASKLLRNLNPDTDGSQQQMLSYFYKTSTQTCLFVIKSPTSNKFSDILMALNTAPLNKSIQFPATAIEISKPPKVATVIPARRKLVKTMMYHSVKDFLKSLFFPSPETQHP
Homology
[Close]
BLAST of Clc08G05930 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-13
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 32  DGSQQQMLSYFYKTSTQTCLFVIKSPTSNKFSDILMALNTAPLNKSIQFPATAIEISKPP 91
           + S++ +L  F  T+  +   +    +S K S I MA  TAP NK I+FPATA+   KP 
Sbjct: 104 EASRETLLLTFISTNLSSLQLI----SSTKLSQIPMAPTTAPRNKPIKFPATAVSSLKPR 163

Query: 92  KVATVIPARRKLVKTMMYHSVKDFLKSLFFPSP 125
           KVATVIPARRKLV TMMY+S++DFLKSL   SP
Sbjct: 164 KVATVIPARRKLVMTMMYYSIRDFLKSLLRRSP 192

[Close]
BLAST of Clc08G05930 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 92  KVATVIPARRKLVKTMMYHSVKDFLKSLFFPSPET 127
           KV +VIP +RKLVKTMMYH +KDFLKSLF P P+T
Sbjct: 87  KVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPKT 121

The following BLAST results are available for this feature:
BLAST of Clc08G05930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578935.14.8e-1352.69hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.12.4e-0474.29hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc08G05930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G05930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G05930 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G05930.1Clc08G05930.1mRNA