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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGACTCGTAATTATGTTAATCTCATCACTTATTTGTATTAAGGTTTTTATCTTCTTCTTCCTTTTTTGGTGGATAGGTCTTCCTCTGTTTCATTGTACAAAGAAAACAGAGCATTTTGTGTTTTGGCTTGTTCTTGACAAATTACAAATGTATAATTAAATAAAGTTGTGATTTGTTCTTATTTTAGTGTCATGTGCGAAATTCTGATGGGTATTTGTTGAATCAAAGAGTAGGAGATTGGGGTAATTCAACCAAATTAAAAACAGAGACTTCATTTCTTTTCGGGAAAAA mRNA sequence ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGACTCGTAATTATGTTAATCTCATCACTTATTTGTATTAAGGTTTTTATCTTCTTCTTCCTTTTTTGGTGGATAGGTCTTCCTCTGTTTCATTGTACAAAGAAAACAGAGCATTTTGTGTTTTGGCTTGTTCTTGACAAATTACAAATGTATAATTAAATAAAGTTGTGATTTGTTCTTATTTTAGTGTCATGTGCGAAATTCTGATGGGTATTTGTTGAATCAAAGAGTAGGAGATTGGGGTAATTCAACCAAATTAAAAACAGAGACTTCATTTCTTTTCGGGAAAAA Coding sequence (CDS) ATGTCAATTCTAAATAAATGGAATGGAGGGTTTAGAGTATTGATTTACCTTACCAAAGCTTCGAAGCTTCTTAGAAACCTTAACCCCGACACTGATGGTTCCCAACAACAAATGCTTTCATACTTCTATAAAACTTCAACTCAGACTTGCTTATTTGTAATCAAATCTCCAACCTCAAACAAATTCAGTGACATTCTGATGGCTCTAAATACTGCCCCACTTAACAAGTCCATCCAATTTCCGGCCACCGCCATCGAAATTTCGAAACCGCCGAAGGTTGCCACTGTAATTCCGGCGAGAAGAAAGTTGGTGAAGACGATGATGTATCACTCTGTAAAGGACTTTCTCAAATCCCTGTTTTTTCCTTCGCCGGAAACCCAACACCCATGA Protein sequence MSILNKWNGGFRVLIYLTKASKLLRNLNPDTDGSQQQMLSYFYKTSTQTCLFVIKSPTSNKFSDILMALNTAPLNKSIQFPATAIEISKPPKVATVIPARRKLVKTMMYHSVKDFLKSLFFPSPETQHP
Homology
BLAST of Clc08G05930 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 85.1 bits (209), Expect = 4.8e-13 Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 0
Query: 32 DGSQQQMLSYFYKTSTQTCLFVIKSPTSNKFSDILMALNTAPLNKSIQFPATAIEISKPP 91
+ S++ +L F T+ + + +S K S I MA TAP NK I+FPATA+ KP
Sbjct: 104 EASRETLLLTFISTNLSSLQLI----SSTKLSQIPMAPTTAPRNKPIKFPATAVSSLKPR 163
Query: 92 KVATVIPARRKLVKTMMYHSVKDFLKSLFFPSP 125
KVATVIPARRKLV TMMY+S++DFLKSL SP
Sbjct: 164 KVATVIPARRKLVMTMMYYSIRDFLKSLLRRSP 192
BLAST of Clc08G05930 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04 Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0
Query: 92 KVATVIPARRKLVKTMMYHSVKDFLKSLFFPSPET 127
KV +VIP +RKLVKTMMYH +KDFLKSLF P P+T
Sbjct: 87 KVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPKT 121
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG6578935.1 | 4.8e-13 | 52.69 | hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6602134.1 | 2.4e-04 | 74.29 | hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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