Clc08G05870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G05870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 17150931 .. 17154319 (+)
RNA-Seq Expression	Clc08G05870
Synteny	Clc08G05870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCAGTTGAAACCTATTACACAATTGATCCATCAATGAATACCCATTGCAATTACATCAATTTTGATTACGGATCGGTAAGCGTTTGTAAAGCTATCATATCCTCGTAGAAGAGAGCAACATAAATACACGAGTATTGATGGAGGGAAAGAGAATAAGAAAAAAAAAAGTAGACAAAACACCTTATGACAAACACAACCAATGGCAGAGACGGAGGGTCCAATGGCAAAAGTGTGGAAACAACAACAAGCGTAGACGAAAAAAAATAAAGAAAAGGCATAGAGAATCGAAGAGGAATGACAAAAAAATAAAAATAAATAAAAAATAAATAAAAAATAAATAAATAAAGGATAAATGGAAAATGTGATAAATTTATAGTTTACTTCGTTTAACACAATTAAAGCATTGACGTATCCTCCAAATTCGTTTGCAACTATATGAAACAAGTGTTTCGGTTAAAATTTAAGTGTTACATTTCAAACCTATCTCAATGCCACATAGGAATCATCAAGAGAAGTGTTGTTTTTCCTATGGGATGTGATAGCTCATGCATAGGTGTTACTTTTCCCAATAGTTTTAGTTTTACATTTGCGAGAAGTGCACTCGAGATCTTAACTTAACTTCTCCTGACGCCAAATTAAAATTGTTGAAGGAAGCAATGTCTCCTAACGAGTTATCATAATTTTTGAAAAAAGAACACTTATTTTGACAATTCTCATGCGATGTCAGAAAAGTGCACAAAGAGACGGTGTTTAATTTACACATTTTAAATAACTTCTCATGCTGCCACATAATGTTGAACCATTTGACAAGTGTTGTTTTTCGCCATGACAATTGTTAAGAGTGATTTTGGATTGAATGATATAATTTACATAAAATAAGAATGAGAAACAATGAAGGCAAGAAAATAATGAGGTTTTGGCAAAAAAGAACATCATATGCCCATTTTTTGGCTTAGTGGAGATGGTTAGTTTGTGTCAAGACCCAAATTAATGTGCTATATTGAAATAGCTAATAGGACATGTCTTGCACATGTCCCAACCCAAAGCATCATCCTAGGACCAAAATGGGCCTACAGGAAGATGCTTGACCTTAGCAAAGCATGGAACCAGACACACCCCTCAACTCACCAAGTTGTACAATTATCTTAAAGCGACTCTAAAACCTAACTGATTGGATTTACTTAGGTCAACCGCCTTTATAAATGCATCATTATAGTTCCATATGAGGTAATTTGAATCCTACAAACTCTCTAGCTTCTATAGTCTTTCACTCTCTAACTTAACATTGTACACTGATGTGGTGTTTTTCTCTTTTCTAGGCTACGCTCTTCTCCTCTTCAAACAAATTCATTGGTGGTGCCACAAGAAAGATCACGTGTGTTTCTCTTGTTTAGATTTTGACATCAACAACGACTATAAACAGTCAAGACATATTGCTTGCCCCATTGCGTTGATGTGGCTCGAGAAAAATAACACTTCTTCTGACAATAAATATGTGGGGTCGGAGAAATGCACTTCTCTCTACCTTCTAACATGAAGATCATTGGTTGTAAATGAATAAGTGCATAGATCAAACTAGCTTTTGTCTGAGCTAAGGTGTAAATTGTGTGTCATACCAACGGAGAATCCATAAGTGTTGGGCTTGCACATTGACTTTGATTAGGTAATTTGGTTGCTTTTGAGTTTTGTTGGTCATGTTGGAAAGTTTCTATGCGATGTCTTGACATGTGATGTTGATGTGGGTTTGGAGGGAGTCCATAATAGGAAAGTATTACTCTTTTTTATTTTGAATTCAACAGGGTAAGGAAAGAAACCAATGATCTTTTAGATGATAATTATTGCCCCACTATTCACTAAATTAAACTCGAATTGACTAATAGAAGTTACACCAAACCCATAACATAAACAAAAATATTTTAATGTGTTTGACAATCTTTCAAAATAGATTTTAAAAATTATTAGTGTCTTTATTTTAAATACTTAATTTTTTTAATTTTACTTTAAACACTTATTATCAAAAGTGTTTAAATGAAAACTAATTTTTGAAAAATATTTATATTTTAAGTTAATCCAAATGAATTTAAATCTGTTTACATTTAATTTTTTATCCCAGAGCTTGTTTTTGTTCCATGACCAAAACATATAATAAAAAGCATTGAAGGGTATTTTTGTATTTTAATTAATTTGTGTGTTGACCTGTCCTTTTCCCTTTTTAATTGATTAGTTCCGGTTTAATCCCCAATAAAAGTTAATACGATATTTTAAAATTTCTATCTATCAAATTGGTTTGTCAATAATAAAAGTTGGGAAAGCCCGCAATTCAAAATTAACACGTTTAATTATCTAAAAGACAATTAATATTTGATTTGTCAAAAAAAAAAAAAATTTGAATAATGCGTCTGCTTAAAAGAAAGGGGAGGCTACAGTAAAAAAAGTTGAAAGTTGATAAATAAAAATATGCCAAACATATACATAGATATTTTTCAAAAAGAAAGATAAGTGTTTTTTTAATTGCTCTGAAGTTGTTTTTTTAATTGCTAAGAATTTATATTTGATATTCAATTTAATATCTCAATTGTCTACCTTGAAAAGGAAAAAAGTTTGAAAAGATAGAGATGATAAAGGATAATGAGTTTTTATCAAAAAAAAAAAAAAAAAAAAAGAATGAACCAAAATATATTATTAATATTTATTATTAAAAAAGAAAAAAGAGTTGAACCCTAACATTTGTTTACGTGAAATTTCGCTGGCCCGAATCTTTAGAATTCATACTTGAACCCATTATGTAGCCAGGAGCAAGGAAGGGAAAAGGTGATATTACCAAAATACCCTAAAACGTACGATCAGAGCGTGTAGGGCAAAACGGTCTCTACCGACTACCAATCAACACCAAATTCCTTCTCTCGGTCGGGAACTCTTGTTAGAAGTTGAAACTTAGAACAACGTTTATAAAGCGTAAACATCCCCTCTTCGATTCTTTTTCTTTAATCTATTTTCTATTTTTCTTTTTTATCGCTCTCTTTTGCAAACGGAATTCGTAAGAGCAGCAATTTGGACGCCATTGAAAAACTGCACAACTTCATCCGTTTACTCAATTTTGTCTTCCCCTCCAGGTAATTTGCCGTCTTTGTTTGATTCTTTCTGACTTTTCTTTTTCTATTTGTTTTCGTTTTTGGCAGAACTTTGTGTTTTCCGGCGCAGATGTTACTGCATTGCCTTACAAATTCTGAAATTAGGGTTTTAATGTTGCAGAGAGTCGGGCTAGTGCCATTTTTTTTGGTGGGTTATCTGCCCCTGTTAGAATTCCATTTGAATGCGACGAGAGTATTCTTGTTTTCTCCGGTTGTAATTGTTGTGAGCTAGCAGAACTCGGATTTGATTGA

mRNA sequence

ATGTTTGCAGTTGAAACCTATTACACAATTGATCCATCAATGAATACCCATTGCAATTACATCAATTTTGATTACGGATCGGTCAACCGCCTTTATAAATGCATCATTATAGTTCCATATGAGGCTACGCTCTTCTCCTCTTCAAACAAATTCATTGGTGGTGCCACAAGAAAGATCACAGCAGCAATTTGGACGCCATTGAAAAACTGCACAACTTCATCCGTTTACTCAATTTTGTCTTCCCCTCCAGAGAGTCGGGCTAGTGCCATTTTTTTTGGTGGGTTATCTGCCCCTGTTAGAATTCCATTTGAATGCGACGAGAGTATTCTTGTTTTCTCCGGTTGTAATTGTTGTGAGCTAGCAGAACTCGGATTTGATTGA

Coding sequence (CDS)

ATGTTTGCAGTTGAAACCTATTACACAATTGATCCATCAATGAATACCCATTGCAATTACATCAATTTTGATTACGGATCGGTCAACCGCCTTTATAAATGCATCATTATAGTTCCATATGAGGCTACGCTCTTCTCCTCTTCAAACAAATTCATTGGTGGTGCCACAAGAAAGATCACAGCAGCAATTTGGACGCCATTGAAAAACTGCACAACTTCATCCGTTTACTCAATTTTGTCTTCCCCTCCAGAGAGTCGGGCTAGTGCCATTTTTTTTGGTGGGTTATCTGCCCCTGTTAGAATTCCATTTGAATGCGACGAGAGTATTCTTGTTTTCTCCGGTTGTAATTGTTGTGAGCTAGCAGAACTCGGATTTGATTGA

Protein sequence

MFAVETYYTIDPSMNTHCNYINFDYGSVNRLYKCIIIVPYEATLFSSSNKFIGGATRKITAAIWTPLKNCTTSSVYSILSSPPESRASAIFFGGLSAPVRIPFECDESILVFSGCNCCELAELGFD

Homology

[Close]

BLAST of Clc08G05870 vs. NCBI nr
Match: KAG7016460.1 (Histone-lysine N-methyltransferase ASHH2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 35/68 (51.47%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 46  SSSNKFIGGATRKITAAIWTPLKNCTTSSVYSILSSPPESRASAIFFGGLSAPVRIPFEC 105
           SS  +F+G       AAIWTPLKNC +SSVYSI SSP   R      G L   V IP EC
Sbjct: 12  SSQTEFVG-------AAIWTPLKNCASSSVYSISSSPKRVRLVPFLVGYLL--VGIPLEC 70

Query: 106 DESILVFS 114
           DE + +FS
Sbjct: 72  DEIVFLFS 70

The following BLAST results are available for this feature:

BLAST of Clc08G05870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016460.1	2.1e-05	51.47	Histone-lysine N-methyltransferase ASHH2, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Clc08G05870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05870 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G05870.1	Clc08G05870.1	mRNA