Clc08G05610 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCTTCTACTCCAAAATCTGTCTTTGCTGAAGATTCTTTGGCTTCTCTCAGCCTTGAGTAATGCCAATCATATTATAAGAACGTCTGTTGCAGTTCATCTTGCACAATCTAAGATCTCTAATACTGACGCTTCTGCTGGATCTTCTAGAACTAATCATGTAGCAAGTACTTGTGATTTAGTTTCTTCTCCATCTTTTCATATATGGATAGTAGATTTAGGGGCTTCTGCACATGTCTGTTGTTCTCGCTTTTTGTTTCTTTGACTGTTGTATTTGATATGACCGTCTCTTTTCCTAACTCTACTGAATTAATGTGAAGTTCACGGGTGATGTTTGTCTTAATTTTGATTTGCTTCTACAAGATGTCCTGTTCATGCCTATTTTCAAGTTCAGCCTCCTAGTGCTCTTACCACTGCTATGCTTGTTATGATTCAGTTTGCTGGTTCTTAAGTTCTTCAGGACAAGTGTTATTTGAAGACGAATCTTTATCAAGGATTATATTTGTTTGAAGCTGGTTCATTACCTACTTGACGTACAACAAAATGAGTTTCTACTTCTATTAACTACATGAATGTTTCTCACTCCTTGCATCTTGGGACAGTAGACTTGGACATCTCTTTGGATGCTTTAAAGCATGTTTTACCTAATGGACAACTTAAAAATGTTTCTATTAAAGATGTTTATGTTCCTCCATGTTTGATTTGTCCCCTTGCTAAACAAAAGCGTTTGTCATTTCATTCACCTAATCACTTGTCTGAACATTGTTTTGATTTGTTGCATTGTAATGTTTCAGGGCCTTATCAATCAACACATACTGGTTGTCATTATTTCCTTACCCTAGTTGATGATTTTTCAAGATATATGTGGGTCTTTTTTTTTTTTATTTTTATTTTTTTTTATCAAGACTAAGTCTGATGTTTAGTGCATATAGTTCCTCAGTTTTTTCAACTTGTTGTAACACCGTTTGGTACTACTATTAAACAAGTCCGTTCAGATAATGCTCCGAAATTAGCCTTTACTGATTTTTTCCTTATAGAAGGTGTCATTTATTAGTACTTCTGTGTACATCGTCTTGAACAAAATTCAGTTATAGAACGAAAACATCATCACCTTCTTAATGTTGCTAGAGCCCATCTATTTCAGTCTCGATTGCCAATTTCTTTTTGGAGAGATTGTATACTTACTACTTGTCATTTAATCATAGAACTCCTTCCTCTATATTTCATTGGAAGACTCCTTATTATCGGCTCTATCAAAAAAATGTTGATTATAGTTTGTTGAGGACTTTTGGATGTTTGATGTTTGCTTCCATGCTTTCTAATCATTGTTCTAAATTTCATCCAATAGTTGTCTCTTCAGTTTTTGTGGGGTATTCTCCTGGCATTAAGGGATACAAAACTTTATGATATTGAGAATCATAAGTTCTTCATATCCCGTGATGTAGTTTTTCATGAGTCAGTTTTTTCGTTTCATGATGTCACAGCTGAGACTGATATTCATGATCCCTTTCTAGACTCAGTAGTACTAACTCCTTTTTTTTGTTCACTCGAGTCCACGACACAATATGAAGTTCTCACTACTAATCAGATTGCTCCTTCTGCTATAGTCAATCAAAATATTGTTTTGGATGAATCTAATACTGTCCCCTGCTTTCTGAAAATTTGTGCTCAATGTTTCAGCTACTTTTGAACCTCGGTTTTATCATCAGGCTGCTTCTGATGTCCAATGGCATCAAGTTGTAGCAAATGAGTTAAAAGCCATGGAAGATAGTCAGACTTGGTTTATTGTTCCTTTGCCCCATAATCAACATTCCATAGGTTGTACACGGGTCTACAAAGTGGAACATAAAGTTGATGGTAGTGTTGAGTGTTACAAAGTACGTCTAGTGGCTAAGGGTTACACTTATCAAGAGGGATTATGTTGA ATGGTTCTTCTACTCCAAAATCTGTCTTTGCTGAAGATTCTTTGGCTTCTCTCAGCCTTGAGTAATGCCAATCATATTATAAGAACGTCTGTTGCAGTTCATCTTGCACAATCTAAGATCTCTAATACTGACGCTTCTGCTGGATCTTCTAGAACTAATCATGTAGCAATTCAGCCTCCTAGTGCTCTTACCACTGCTATGCTTGTTATGATTCAGTTTGCTGCTACTTTTGAACCTCGGTTTTATCATCAGGCTGCTTCTGATGTCCAATGGCATCAAGTTGTAGCAAATGAGTTAAAAGCCATGGAAGATAGTCAGACTTGGTTTATTGTTCCTTTGCCCCATAATCAACATTCCATAGGTTGTACACGGGTCTACAAAGTGGAACATAAAGTTGATGGTAGTGTTGAGTGTTACAAAGTACGTCTAGTGGCTAAGGGTTACACTTATCAAGAGGGATTATGTTGA ATGGTTCTTCTACTCCAAAATCTGTCTTTGCTGAAGATTCTTTGGCTTCTCTCAGCCTTGAGTAATGCCAATCATATTATAAGAACGTCTGTTGCAGTTCATCTTGCACAATCTAAGATCTCTAATACTGACGCTTCTGCTGGATCTTCTAGAACTAATCATGTAGCAATTCAGCCTCCTAGTGCTCTTACCACTGCTATGCTTGTTATGATTCAGTTTGCTGCTACTTTTGAACCTCGGTTTTATCATCAGGCTGCTTCTGATGTCCAATGGCATCAAGTTGTAGCAAATGAGTTAAAAGCCATGGAAGATAGTCAGACTTGGTTTATTGTTCCTTTGCCCCATAATCAACATTCCATAGGTTGTACACGGGTCTACAAAGTGGAACATAAAGTTGATGGTAGTGTTGAGTGTTACAAAGTACGTCTAGTGGCTAAGGGTTACACTTATCAAGAGGGATTATGTTGA MVLLLQNLSLLKILWLLSALSNANHIIRTSVAVHLAQSKISNTDASAGSSRTNHVAIQPPSALTTAMLVMIQFAATFEPRFYHQAASDVQWHQVVANELKAMEDSQTWFIVPLPHNQHSIGCTRVYKVEHKVDGSVECYKVRLVAKGYTYQEGLC Homology
BLAST of Clc08G05610 vs. NCBI nr
Match: WP_217833333.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 137.9 bits (346), Expect = 7.5e-29 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Clc08G05610 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia]) HSP 1 Score: 107.8 bits (268), Expect = 8.3e-20 Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0
BLAST of Clc08G05610 vs. NCBI nr
Match: TYK16758.1 (Copia protein [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 4.1e-19 Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0
BLAST of Clc08G05610 vs. NCBI nr
Match: KAA0068025.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]) HSP 1 Score: 103.2 bits (256), Expect = 2.0e-18 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Clc08G05610 vs. NCBI nr
Match: TYK18103.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]) HSP 1 Score: 103.2 bits (256), Expect = 2.0e-18 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10 Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09 Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.1e-09 Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04 Identity = 20/59 (33.90%), Postives = 33/59 (55.93%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20 Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy TrEMBL
Match: A0A5D3CZP1 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00100 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19 Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy TrEMBL
Match: A0A5D3D1N3 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00250 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 9.9e-19 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy TrEMBL
Match: A0A5A7VQN7 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002210 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 9.9e-19 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Clc08G05610 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 6.4e-18 Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of Clc08G05610 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 81.3 bits (199), Expect = 7.7e-16 Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 0
BLAST of Clc08G05610 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) ) HSP 1 Score: 66.6 bits (161), Expect = 2.0e-11 Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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