Clc08G05420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G05420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	zinc_ribbon_15 domain-containing protein
Location	ClcChr08: 16551954 .. 16552831 (-)
RNA-Seq Expression	Clc08G05420
Synteny	Clc08G05420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCATTCTAAAAATAATAATAATAATAATAATAATAAATACTTTTTCCCTAAAAAAATAAAAAAAAAGAATAAAAGAGCGCTACCGGCTGCAGAAGTTGATGGAATGGAAACCCTCCGAAGCGTCCAGACTCTACTGCAACCGATCAAACCGCATCTTCCCTCCAAATAAACAGAGCCACCGCCCCGCAAAAATCCCAAACGCAAAACAAAATGTTCTTCTTCTTTGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTCACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAACAGCCGTTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAAATTTCGAAAGTTCTGTGTTCTCCATTGTGTAGTTAAAGAAATATGAATTCTGTGGTTCTTCTTGTTCAATTCCGCTTCAAATCATTTGAGATCTTTTATAGCTTTGCCTGTTAATAAATCATAATGGTGTCTGAAATTTTTTATTGTCCTTGAAATCTGCTTCTTTTGGATGAGAAATTGCTGAAATCAATGTGGAATTCAAGATTGAGAAAGAAAAATCTTCATTAATACTGTTCAATTTCTTCGTTGAAGATACACAGAACATGGCTTCCTCGTGTACTTTTACAACAAGCCTAAAACAATGATCTTAGGAGGCGGGCTCTGGAG

mRNA sequence

CACCATTCTAAAAATAATAATAATAATAATAATAATAAATACTTTTTCCCTAAAAAAATAAAAAAAAAGAATAAAAGAGCGCTACCGGCTGCAGAAGTTGATGGAATGGAAACCCTCCGAAGCGTCCAGACTCTACTGCAACCGATCAAACCGCATCTTCCCTCCAAATAAACAGAGCCACCGCCCCGCAAAAATCCCAAACGCAAAACAAAATGTTCTTCTTCTTTGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTCACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAACAGCCGTTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAAATTTCGAAAGTTCTGTGTTCTCCATTGTGTAGTTAAAGAAATATGAATTCTGTGGTTCTTCTTGTTCAATTCCGCTTCAAATCATTTGAGATCTTTTATAGCTTTGCCTGTTAATAAATCATAATGGTGTCTGAAATTTTTTATTGTCCTTGAAATCTGCTTCTTTTGGATGAGAAATTGCTGAAATCAATGTGGAATTCAAGATTGAGAAAGAAAAATCTTCATTAATACTGTTCAATTTCTTCGTTGAAGATACACAGAACATGGCTTCCTCGTGTACTTTTACAACAAGCCTAAAACAATGATCTTAGGAGGCGGGCTCTGGAG

Coding sequence (CDS)

ATGTTCTTCTTCTTTGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTCACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAACAGCCGTTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAA

Protein sequence

MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCNNCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL

Homology

[Close]

BLAST of Clc08G05420 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 5.5e-58
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGL+QQVRQ++KSSAGRCINCNSPADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQSFSPPPISDQS PSAALLRAL CRSCN++VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of Clc08G05420 vs. NCBI nr
Match: KAG7016486.1 (hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFPQSFSPPPISDQS+P A L R LRCRSCNK+VEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Clc08G05420 vs. NCBI nr
Match: XP_022992997.1 (uncharacterized protein LOC111489157 [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS+AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP+SFSPPPISDQS+P AAL R LRCRSCNK+VEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Clc08G05420 vs. NCBI nr
Match: KAG6578964.1 (hypothetical protein SDJN03_23412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRC+NCNSPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCVNCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFPQSFSPPPISDQS+P A L R LRCRSCNK+VEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Clc08G05420 vs. NCBI nr
Match: XP_022962458.1 (uncharacterized protein LOC111462885 [Cucurbita moschata])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFP+SFSPPPISDQ  PSAALLRALRC SCNK+VEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Clc08G05420 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS+AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP+SFSPPPISDQS+P AAL R LRCRSCNK+VEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Clc08G05420 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.6e-56
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLV YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFP+SFSPPPISDQ  PSAALLRALRC SCNK+VEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Clc08G05420 vs. ExPASy TrEMBL
Match: A0A6J1FFV9 (uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC111445104 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP SFSPPPISDQS+P AA  R LRCRSCNK+VEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Clc08G05420 vs. ExPASy TrEMBL
Match: A0A5A7V2D0 (zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001160 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS A RCINC+SPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQS SPP  SDQ SPSAAL RALRCRSCNK+VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-SPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Clc08G05420 vs. ExPASy TrEMBL
Match: A0A1S3CRV3 (uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGLEQQVRQLLKS A RCINC+SPADLV+YEKVLKLFFVPVWRWPGK+PLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQS SPP  SDQ SPSAAL RALRCRSCNK+VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-SPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Clc08G05420 vs. TAIR 10
Match: AT1G44414.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-42
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVHYEKVLKLFFVPVWRWPGKQPLMHCN 60
           MFFFFVGGL QQVRQ+LKS AG CI C S ADLV Y+KV+KLFFVPVWRWPGK PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           +C LFFPQS SPPP+S              CR C+++VEP+F FCP+CGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of Clc08G05420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884584.1	5.5e-58	91.96	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]
KAG7016486.1	5.2e-56	89.29	hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022992997.1	5.2e-56	89.29	uncharacterized protein LOC111489157 [Cucurbita maxima]	[more]
KAG6578964.1	6.8e-56	88.39	hypothetical protein SDJN03_23412, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022962458.1	1.2e-55	89.29	uncharacterized protein LOC111462885 [Cucurbita moschata]	[more]

BLAST of Clc08G05420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRI4	2.5e-56	89.29	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]
A0A6J1HEV4	5.6e-56	89.29	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1FFV9	9.5e-56	89.29	uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A5A7V2D0	1.4e-54	90.18	zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CRV3	1.4e-54	90.18	uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=...	[more]

BLAST of Clc08G05420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44414.1	1.6e-42	66.07	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..109 e-value: 2.4E-23 score: 82.7
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G05420.1	Clc08G05420.1	mRNA