Clc08G05380 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G05380
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	photosystem II 22 kDa protein, chloroplastic
Location	ClcChr08: 16515874 .. 16518786 (-)
RNA-Seq Expression	Clc08G05380
Synteny	Clc08G05380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATATTAATCAATCTTCTTAAAATTAAAAAAAAAATTGGGAAAAAGAAAAATGAAATGGCAATGGGCATAAATGAACCAGTTATTAAGGTTTAGGACAAAACAGAGGAGTGTAGTCCAAAAGAAAAGCAATGAAAACAATTAAGCATCACATAAATTAAAGGAGGACGTGTCAGTCTATCCGCCGATCCTCAGACTCTCCCACCAAAAATCCTCAAAAATCCCCTTCCCTTCACTTCCACCATACACTTAAAATCCCTTTCTTCTTCATCTTCTTAAAATCTCATCCAAATTAGTCTCTTCCCACTTGCTTAGCCTTTTTGTTTCCATTTCCATGGCGGCTCAAACCATGCTACTCACTTCTGGTGTGTGCCTCCGCCATGGCCTGGTTGTCAACACAGAATTAAGCCTTAGACCTAACGCCCAATTTACTCGCTTCTTTTTTAATCCTCTGCCTTCCAACTCTCTTTCTTCGCCGGCGCCTGGTTTCACCACTCTTGCTATCTTTAAATCTAGAACCAAAGCGCCGCCCAAGAAGGTAATTCATTCATTTTTTTAATTCATTTTTCTTCTTACTACAGTAATTTAATTTTCTTCTTCAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGACGGCATTTTTGGGACCTCCGGTGGTATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGTCAGTTCTATTTCTCTTTTTTTCTTTTTTTTCTTTTTTTTTTTTAAGAGCATTTTTGGATCTATGTTTATGATTATCTTCTAAATATACCAAAATGTCTAGTGATACATAGTCATAAATACTCAATTTTTTTTTTTGTTATATTTTAAAATATTTCTAATTCATTTAAAACAAATATCTCATTTTAAATTATTGATTTTTTTTTTTTTTTTTACTGTCTCATGATTTATTTTATAGATTCCGTGCTTACTAAATCATTCTATCGATGGAGTAATGTTGATTTGTTTAGATCTATAATTTATTGTTTTTTATCCATTTTTCGTCTTAAAAAATAAATAGTTTTCGCATTTCTTTGTTTTTATTTGATAATTTTACTATTTATTTATTTATTATTTGTGTGTGTGAAGTAAGAAATGCGAGAGTCAATTTAGTATGGAATTTGAGAAAGAAAAAAGAGTATAAATTTCGAAAATAGAAAATTAAAATCAAATGTTTTTATGTCACACCTAACATTATTGTTTAATAGTTGTGTTGGTTAGGTATTAGATATATTGGATAGTTACTGCAATCACTCATCGAGAATGTATAAAATTACAATTTAAATTTTTTACTAGTTATAATCACACTAAAGTTATCGAAGTCAACTTAGCTTAATTGTAATAGGCAATGACATGACATTTCTCATAGATGTCAAAGGCTCGATTTTCCTAAAAAGTAAATTTGCTCAAATATTCAAGGATTAGTTCATGTATTGGACATAAAATTAAACATTTAAGAAATTTGAAAATTTATAAACCGAAAATCTATATATATATTATATATGTGACGGTGTAAAATTTGCAGGCATCTATATTGGGAGAAGCCATCACCGGAAAGGGAATTCTCGCACAACTGAACTTGGAAACCGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGAGGAAAATTCATCGACGATCCAGAACCGGCCACCGGATTGGAACGCGCCGTCATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTAAAAGAAGGAGGTAAAATTACAGCACAATCGACTGCTCCATTGTTGAATTGAATCTTGATTGACGTCTCTGTTTTGTTGAAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAACTGTTCGTGGGAAGATTGGCGCAGCTAGGGTTTGCATTCTCGCTGATCGGAGAAATTATTACAGGAAAGGGAGCATTGGCGCAGTTGAATATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAGGAAGATGATGAATGAAGAGATGGATTGTGGTTTAATTTTCTCTGTACATCAACTTAGCAAATCCAGGATTGTGCTATTATAACTTGTTTATTCTGCTTCACCACTCAAAACAACCGAATCAAATTAACAAACTTTGCCTAGTGAAGTTTAGGAAATGTTACTCTTTTTCTTCTTTAGTCTGCTCTTACTTAATTATTGAACTTCTTATAATTTTTATAATAGGTTAATAGTCATATGAAGAAATAATAAAATTATCTAACTAATATAATTTAATCAATTAGTTCAATTCATGGATATCAAAATAAAGAAAGAAATAAATAAAAAGCAAAACATGTTAGAGAGAGAAAGAACATAATCATCAAATCATAAATGTGAAGTTTAAATGTAATCGGCACAATAGGTCAATGAACAATGTGTTTAGTTTTGACAAAATATTAGAAATGTAGTTTCCTCCATCTAAGAAGTTTAAAGCTCTCATGAGCTTCAAGCATCATAAATGGAGCCTATGCCTTTCTCAATTAAAAAAAAATACAAAGCTTAATTGTATGAGTTGTTTTCAAATATAGCAAAATGAACTAAACTATTTACAAATATAGCAAAATATCACTTTGATAGATAATGATAGACACTAATAGACTAAGGGCTTGTTTGGGGTATTGTATTGGGTTACAAAACCCATGTTCGGGGAATGGGCTTTGGGGTTGGTTTTGTAATCCAAACCAACCCCAAAATCAATCCATTCCAATTCTTCCCCCCATCTGCTGATTATACCCGGTTTCCGACCCTTATCCAATGTTTT

mRNA sequence

AAATATATTAATCAATCTTCTTAAAATTAAAAAAAAAATTGGGAAAAAGAAAAATGAAATGGCAATGGGCATAAATGAACCAGTTATTAAGGTTTAGGACAAAACAGAGGAGTGTAGTCCAAAAGAAAAGCAATGAAAACAATTAAGCATCACATAAATTAAAGGAGGACGTGTCAGTCTATCCGCCGATCCTCAGACTCTCCCACCAAAAATCCTCAAAAATCCCCTTCCCTTCACTTCCACCATACACTTAAAATCCCTTTCTTCTTCATCTTCTTAAAATCTCATCCAAATTAGTCTCTTCCCACTTGCTTAGCCTTTTTGTTTCCATTTCCATGGCGGCTCAAACCATGCTACTCACTTCTGGTGTGTGCCTCCGCCATGGCCTGGTTGTCAACACAGAATTAAGCCTTAGACCTAACGCCCAATTTACTCGCTTCTTTTTTAATCCTCTGCCTTCCAACTCTCTTTCTTCGCCGGCGCCTGGTTTCACCACTCTTGCTATCTTTAAATCTAGAACCAAAGCGCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGACGGCATTTTTGGGACCTCCGGTGGTATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTATATTGGGAGAAGCCATCACCGGAAAGGGAATTCTCGCACAACTGAACTTGGAAACCGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGAGGAAAATTCATCGACGATCCAGAACCGGCCACCGGATTGGAACGCGCCGTCATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTAAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAACTGTTCGTGGGAAGATTGGCGCAGCTAGGGTTTGCATTCTCGCTGATCGGAGAAATTATTACAGGAAAGGGAGCATTGGCGCAGTTGAATATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAGGAAGATGATGAATGAAGAGATGGATTGTGGTTTAATTTTCTCTGTACATCAACTTAGCAAATCCAGGATTGTGCTATTATAACTTGTTTATTCTGCTTCACCACTCAAAACAACCGAATCAAATTAACAAACTTTGCCTAGTGAAGTTTAGGAAATGTTACTCTTTTTCTTCTTTAGTCTGCTCTTACTTAATTATTGAACTTCTTATAATTTTTATAATAGGTTAATAGTCATATGAAGAAATAATAAAATTATCTAACTAATATAATTTAATCAATTAGTTCAATTCATGGATATCAAAATAAAGAAAGAAATAAATAAAAAGCAAAACATGTTAGAGAGAGAAAGAACATAATCATCAAATCATAAATGTGAAGTTTAAATGTAATCGGCACAATAGGTCAATGAACAATGTGTTTAGTTTTGACAAAATATTAGAAATGTAGTTTCCTCCATCTAAGAAGTTTAAAGCTCTCATGAGCTTCAAGCATCATAAATGGAGCCTATGCCTTTCTCAATTAAAAAAAAATACAAAGCTTAATTGTATGAGTTGTTTTCAAATATAGCAAAATGAACTAAACTATTTACAAATATAGCAAAATATCACTTTGATAGATAATGATAGACACTAATAGACTAAGGGCTTGTTTGGGGTATTGTATTGGGTTACAAAACCCATGTTCGGGGAATGGGCTTTGGGGTTGGTTTTGTAATCCAAACCAACCCCAAAATCAATCCATTCCAATTCTTCCCCCCATCTGCTGATTATACCCGGTTTCCGACCCTTATCCAATGTTTT

Coding sequence (CDS)

ATGGCGGCTCAAACCATGCTACTCACTTCTGGTGTGTGCCTCCGCCATGGCCTGGTTGTCAACACAGAATTAAGCCTTAGACCTAACGCCCAATTTACTCGCTTCTTTTTTAATCCTCTGCCTTCCAACTCTCTTTCTTCGCCGGCGCCTGGTTTCACCACTCTTGCTATCTTTAAATCTAGAACCAAAGCGCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGACGGCATTTTTGGGACCTCCGGTGGTATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTATATTGGGAGAAGCCATCACCGGAAAGGGAATTCTCGCACAACTGAACTTGGAAACCGGAATTCCGATTTACGAGGCGGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGAGGAAAATTCATCGACGATCCAGAACCGGCCACCGGATTGGAACGCGCCGTCATCCCTCCCGGAAAGAGCTTCAGATCGGCGCTAGGTCTAAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCGAATGAACTGTTCGTGGGAAGATTGGCGCAGCTAGGGTTTGCATTCTCGCTGATCGGAGAAATTATTACAGGAAAGGGAGCATTGGCGCAGTTGAATATCGAGACGGGAGTGCCGATCAATGAGATCGAGCCTCTGGTTTTGTTGAACGTTGTGTTCTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAGGAAGATGATGAATGA

Protein sequence

MAAQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE

Homology

[Close]

BLAST of Clc08G05380 vs. NCBI nr
Match: XP_038885143.1 (photosystem II 22 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 496.1 bits (1276), Expect = 1.9e-136
Identity = 253/271 (93.36%), Postives = 262/271 (96.68%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKS 60
           MAAQTMLLTSGVC+ HG+ V  EL LRPNAQF+R FFNPLPS+S+S PA GFTTLA+FKS
Sbjct: 1   MAAQTMLLTSGVCVGHGVGVKRELRLRPNAQFSRLFFNPLPSHSVSLPARGFTTLAVFKS 60

Query: 61  RTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGIL 120
           RTKAPPKKV KPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGIL
Sbjct: 61  RTKAPPKKVSKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGIL 120

Query: 121 AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSF 180
           AQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK+F
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKNF 180

Query: 181 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 240
           RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI
Sbjct: 181 RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEI 240

Query: 241 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 EPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 271

[Close]

BLAST of Clc08G05380 vs. NCBI nr
Match: XP_004150442.1 (photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hypothetical protein Csa_018297 [Cucumis sativus])

HSP 1 Score: 495.4 bits (1274), Expect = 3.2e-136
Identity = 256/272 (94.12%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFK 60
           MAAQTMLLTSGVC+ HG+ +  ELSLRPN  QFTR FFNPLPS+S+S P  GFTTLA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Clc08G05380 vs. NCBI nr
Match: XP_008466710.1 (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA0059887.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa] >TYK24837.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 492.3 bits (1266), Expect = 2.7e-135
Identity = 254/272 (93.38%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFK 60
           MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Clc08G05380 vs. NCBI nr
Match: XP_022952982.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_023545993.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7032798.1 Photosystem II 22 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.5 bits (1199), Expect = 1.6e-127
Identity = 239/275 (86.91%), Postives = 254/275 (92.36%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTL 60
           MAAQTM+L+SGVC  HG+ +  E++     LRPNAQF+R FFNPLPS+S+S PA GF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Clc08G05380 vs. NCBI nr
Match: XP_022991058.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 463.4 bits (1191), Expect = 1.4e-126
Identity = 238/275 (86.55%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTL 60
           MAAQTM+L+SGVC  HG+ +  E++     LRPNAQ +R FFNPLPS+S+S PA GF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot
Match: Q02060 (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.3e-108
Identity = 209/277 (75.45%), Postives = 239/277 (86.28%), Query Frame = 0


Query: 3   AQTMLL-------TSGVCLRHGLVVNTEL-SLRPNAQFTRFFFNPLPSNSLSSPAPGFTT 62
           AQ MLL       T+ + L+   ++  ++  ++P +  +  FF+PLPS+S SS +  F T
Sbjct: 2   AQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSS-SSSSTVFKT 61

Query: 63  LAIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 122
           LA+FKS+ KA PKKVEKPK KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAAS+LGE I
Sbjct: 62  LALFKSKAKA-PKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGI 121

Query: 123 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 182
           TGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+AVI
Sbjct: 122 TGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVD--EPTTGLEKAVI 181

Query: 183 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGK  RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 182 PPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 241

Query: 243 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           VPINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E+++
Sbjct: 242 VPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEED 274

[Close]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot
Match: Q9FPP4 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.3e-107
Identity = 211/278 (75.90%), Postives = 230/278 (82.73%), Query Frame = 0


Query: 3   AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTT 62
           AQTMLLT+   V LR    +   L  +P    +  F   LP      + + SS     TT
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPKP---LSSLFLPSLPLRFSSSTTNFSSSKFTSTT 61

Query: 63  LAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGE 122
           +A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE
Sbjct: 62  VALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 121

Query: 123 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 182
           AITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGLE+A
Sbjct: 122 AITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKA 181

Query: 183 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 242
           VIPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN E
Sbjct: 182 VIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFE 241

Query: 243 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           TGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 TGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot
Match: P54773 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 4.3e-107
Identity = 211/278 (75.90%), Postives = 229/278 (82.37%), Query Frame = 0


Query: 3   AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLP------SNSLSSPAPGFTT 62
           AQTMLLT+   V LR    +   L  +P    +  F   LP      S + SS     TT
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPKP---LSSLFLPSLPLRFSSSSTNASSSKFTSTT 61

Query: 63  LAIFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGE 122
           +A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE
Sbjct: 62  VALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 121

Query: 123 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 182
           AITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGLE+A
Sbjct: 122 AITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKA 181

Query: 183 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 242
           VIPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN E
Sbjct: 182 VIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFE 241

Query: 243 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           TGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 TGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot
Match: Q9XF91 (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.0e-105
Identity = 204/268 (76.12%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 3   AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRT 62
           AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +T
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA---QPKVHHLFLSGNSPVALPSRRQSFVPLALFKPKT 61

Query: 63  KAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQ 122
           KA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGILAQ
Sbjct: 62  KAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQ 121

Query: 123 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRS 182
           LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RS
Sbjct: 122 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNVRS 181

Query: 183 ALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 242
           ALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +IEP
Sbjct: 182 ALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 241

Query: 243 LVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           LVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 LVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot
Match: Q9SMB4 (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 6.8e-105
Identity = 208/276 (75.36%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 3   AQTMLLTSG--VCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPG-----FTTL 62
           AQTMLLT+   V LR    +   L  +P    + FF   LP    S+ A        TT+
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPKP---LSSFFLPSLPLKYPSASASASSHFTSTTV 61

Query: 63  AIFKSRTKAPPKK-VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 122
           A+FKS+ KAP KK V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAI
Sbjct: 62  ALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 121

Query: 123 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 182
           TGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL++AVI
Sbjct: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVI 181

Query: 183 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 242
           PPGK F+SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETG
Sbjct: 182 PPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETG 241

Query: 243 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Sbjct: 242 VPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of Clc08G05380 vs. ExPASy TrEMBL
Match: A0A0A0K7N4 (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 256/272 (94.12%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRPN-AQFTRFFFNPLPSNSLSSPAPGFTTLAIFK 60
           MAAQTMLLTSGVC+ HG+ +  ELSLRPN  QFTR FFNPLPS+S+S P  GFTTLA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Clc08G05380 vs. ExPASy TrEMBL
Match: A0A5A7UZ08 (Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00970 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 254/272 (93.38%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFK 60
           MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Clc08G05380 vs. ExPASy TrEMBL
Match: A0A1S3CS23 (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 254/272 (93.38%), Postives = 262/272 (96.32%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELSLRP-NAQFTRFFFNPLPSNSLSSPAPGFTTLAIFK 60
           MAAQTMLLTSGVC+ HG+ +  ELSLRP N QFTR FFNPLP++S+S PA GFT LA+FK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Clc08G05380 vs. ExPASy TrEMBL
Match: A0A6J1GLX6 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455493 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.8e-128
Identity = 239/275 (86.91%), Postives = 254/275 (92.36%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTL 60
           MAAQTM+L+SGVC  HG+ +  E++     LRPNAQF+R FFNPLPS+S+S PA GF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Clc08G05380 vs. ExPASy TrEMBL
Match: A0A6J1JV31 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111487764 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.6e-127
Identity = 238/275 (86.55%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCLRHGLVVNTELS-----LRPNAQFTRFFFNPLPSNSLSSPAPGFTTL 60
           MAAQTM+L+SGVC  HG+ +  E++     LRPNAQ +R FFNPLPS+S+S PA GF TL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAIT 120
           AIFKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE IT
Sbjct: 61  AIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGIT 120

Query: 121 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180
           GKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP
Sbjct: 121 GKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIP 180

Query: 181 PGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240
           PGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 181 PGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 240

Query: 241 PINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           PINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 PINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of Clc08G05380 vs. TAIR 10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 382.5 bits (981), Expect = 2.8e-106
Identity = 204/268 (76.12%), Postives = 223/268 (83.21%), Query Frame = 0


Query: 3   AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRT 62
           AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +T
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA---QPKVHHLFLSGNSPVALPSRRQSFVPLALFKPKT 61

Query: 63  KAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQ 122
           KA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGILAQ
Sbjct: 62  KAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQ 121

Query: 123 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRS 182
           LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RS
Sbjct: 122 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNVRS 181

Query: 183 ALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 242
           ALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +IEP
Sbjct: 182 ALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 241

Query: 243 LVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           LVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 LVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Clc08G05380 vs. TAIR 10
Match: AT1G44575.2 (Chlorophyll A-B binding family protein )

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-65
Identity = 137/188 (72.87%), Postives = 149/188 (79.26%), Query Frame = 0


Query: 3   AQTMLLTSGVCLRHGLVVNTELSLRPNAQFTRFFFNPLPSNSLSSPAPGFTTLAIFKSRT 62
           AQTMLLTSGV   H L   + L+     +    F +     +L S    F  LA+FK +T
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA---QPKVHHLFLSGNSPVALPSRRQSFVPLALFKPKT 61

Query: 63  KAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQ 122
           KA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGILAQ
Sbjct: 62  KAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQ 121

Query: 123 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRS 182
           LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+ RS
Sbjct: 122 LNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKNVRS 181

Query: 183 ALGLKEGG 191
           ALGLKE G
Sbjct: 182 ALGLKEQG 184

The following BLAST results are available for this feature:

BLAST of Clc08G05380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885143.1	1.9e-136	93.36	photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004150442.1	3.2e-136	94.12	photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hyp...	[more]
XP_008466710.1	2.7e-135	93.38	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA00598...	[more]
XP_022952982.1	1.6e-127	86.91	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_02354...	[more]
XP_022991058.1	1.4e-126	86.55	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Clc08G05380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02060	2.3e-108	75.45	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
Q9FPP4	3.3e-107	75.90	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
P54773	4.3e-107	75.90	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
Q9XF91	4.0e-105	76.12	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SMB4	6.8e-105	75.36	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]

BLAST of Clc08G05380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N4	1.6e-136	94.12	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
A0A5A7UZ08	1.3e-135	93.38	Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS23	1.3e-135	93.38	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1GLX6	7.8e-128	86.91	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JV31	6.6e-127	86.55	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Clc08G05380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44575.1	2.8e-106	76.12	Chlorophyll A-B binding family protein	[more]
AT1G44575.2	1.1e-65	72.87	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 131..241 e-value: 9.9E-7 score: 31.0 coord: 35..130 e-value: 3.2E-6 score: 29.3
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 85..215 e-value: 7.0E-9 score: 36.4
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..183 coord: 193..256
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 193..256
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..183
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 75..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G05380.1	Clc08G05380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding