Clc08G05250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G05250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 16256056 .. 16258064 (-)
RNA-Seq Expression	Clc08G05250
Synteny	Clc08G05250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCCTTGGTTTATTGGGCTTTTGAGGTGATACTAAGACTATCCAACCCTACTATTGGATTTGCAAGAAGAATAAAAAGTGATGGACCAAGAATTGCTCAATGGGAATCCTAAGAACCTAATGATTGGCGGCATCAACAATAATATCTTCAAAGCTGCTGGTGTAAGTTTTTTATCATTGTTATTTATTTACCTATTTATTATTAGCATGCTATCAATAATAGAAACTATCTTGATATTATGTTATCAATGAAAACTTCTATCACTGATTAACTAATAACATAGAAAATGACTTCAAGTTATCAGTAATAACTTTTGTCACTGATTTCGAGCTATTAGTGATAGCTCCTATCATTGATAGCATGTTATCAAGGATAGAAGCAATCAGTGACAGCTTGAAATTAGTGATAGTTTCTATAAACATGTCATCAAGTAGTGATAGTAATAACCTCTGTCACTGATTTCGAGCTTTTAATTCTCTGTTACTTCATTGGTTCCAACTGAACAAGAATTACAATCAACCTACTATGGGTATTTTGCGGAGCTGGCAACAAAGGAGATGGAGATTGAAAAGGAAAAAGAAGGCAAACAAATATCAATTGGAAGAAAAATTGCTTCAATACAAGAAGAAATTGAAGAACTAAAAAAAGGACAAGAAGCCATTAAGAAAGACATTCATGAAAAATACAAGAAGATTCTTGATATATTGGGCCACATAAAAGAAGCTATCAATGGTCTTCCACAAAAAGGAGAAGGTGGTGAAAAGCAATCTCAAGAACCTCTTGAGAAGAACAAAGCGCCATCACCTAGTTTGGAGCTTTTAGATGCAAGTTTGAACCTTATAGAGGTTGGAGGCAAAGAGGTCAGATTTGCGATTTTCTTTTCTTTTTTTTTTTTTTTTTTTGGAATAAAGAAGTATAATAACATAAATGATATATGCATGTAGACTAAAGCTGAAATTGTTGAGGACAAAGAAGCTCAAGAAAATGACCAATAGAAACAAGATGTTGAAAATGTGATGCACACTTTCCATGTTACCGCAAGTGTACGGGTCAAGTTATAATATAAGACGGTTAAGTTCTGAATATCGTTCCACTGAGGATCAAAATGTAAAGGTTTAAATTACTTAGCTATTCTAGAATTGAATCAATTTTATTTGAGGATTCGAATTCAAGTTGTGATTTAGGGAAAACTAAAAAGGAAAGCAAGTAAATGAGAAACACAAGAGTCAAAAGAGAGTTCTAGGGTATTGAATCTTTGTTTAATTCATTATGCAACATTCTAGGGTTCATGGATTTTATTGCAATTCATATGCTTAAGTCTAGAAACATAAATCCAATTTATTTTCTATAAAAAACAACGTTTTCTCATGCAACCTAATTGATTACTAATATTTTGAAATCAATATAAATTACATGGCATTCAGAGGAGTCTTTAGTAACTTTCATTGTTAACCTAACTATTTGCATGATAGATTAACAACAATTCATTGTTATAGATCCAATTAGACATACAATTATCTCAACCATACATCTAATCTAACATTCAAGGATGACTAATCAACAAGAATTAAGCACAATAATAATGAAAAACATATTCATTACAACAAAACCATGAAGAATCTACAATATCAACATAACTTCATAAACAATTCATTAATACCCTAAAACTAAAGAGTTTAGCCACTCATAGCTTTAGGCAACATGTTCAAAACTAATTTCAGCATAGAAAGAGGGTAAAGAAAGGAAAACTCTACTGTAAGAAGCTCTTGATTAAGAAAGAACCACCAAAATGTCCTTGGTCTTCACGTCAGGAACTCGAACGACACCAAACTCTCTCTCAAACTCTTCTCTCTTCCTTGCAGCCAACTCACTCTTTGGGACTCTCATTGTATTTTCTCTAATTTATCTTCTTTCTCTTGTTTCTCTTGTGTCTTGTCTTCTGATTAGGGTTGCTGGAAACCTACCAATTTATAGAGTTGGCTGCCTAAAATTCTTTCCAAAATTGTT

mRNA sequence

CTTGCCTTGGTTTATTGGGCTTTTGAGGTGATACTAAGACTATCCAACCCTACTATTGGATTTGCAAGAAGAATAAAAAGTGATGGACCAAGAATTGCTCAATGGGAATCCTAAGAACCTAATGATTGGCGGCATCAACAATAATATCTTCAAAGCTGCTGGTAATTACAATCAACCTACTATGGGTATTTTGCGGAGCTGGCAACAAAGGAGATGGAGATTGAAAAGGAAAAAGAAGGCAAACAAATATCAATTGGAAGAAAAATTGCTTCAATACAAGAAGAAATTGAAGAACTAAAAAAAGGACAAGAAGCCATTAAGAAAGACATTCATGAAAAATACAAGAAGATTCTTGATATATTGGGCCACATAAAAGAAGCTATCAATGGTCTTCCACAAAAAGGAGAAGGTGGTGAAAAGCAATCTCAAGAACCTCTTGAGAAGAACAAAGCGCCATCACCTAGTTTGGAGCTTTTAGATGCAAGTTTGAACCTTATAGAGGTTGGAGGCAAAGAGGGTTGCTGGAAACCTACCAATTTATAGAGTTGGCTGCCTAAAATTCTTTCCAAAATTGTT

Coding sequence (CDS)

ATGGAGATTGAAAAGGAAAAAGAAGGCAAACAAATATCAATTGGAAGAAAAATTGCTTCAATACAAGAAGAAATTGAAGAACTAAAAAAAGGACAAGAAGCCATTAAGAAAGACATTCATGAAAAATACAAGAAGATTCTTGATATATTGGGCCACATAAAAGAAGCTATCAATGGTCTTCCACAAAAAGGAGAAGGTGGTGAAAAGCAATCTCAAGAACCTCTTGAGAAGAACAAAGCGCCATCACCTAGTTTGGAGCTTTTAGATGCAAGTTTGAACCTTATAGAGGTTGGAGGCAAAGAGGGTTGCTGGAAACCTACCAATTTATAG

Protein sequence

MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAINGLPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIEVGGKEGCWKPTNL

Homology

[Close]

BLAST of Clc08G05250 vs. NCBI nr
Match: XP_038876482.1 (glutamic acid-rich protein-like, partial [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-27
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1   MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING- 60
           M+IEKEKEGKQ+S GR+IAS+QE IEELK GQE IKKDI+EK+K+ILDILGHIKEAI+  
Sbjct: 29  MDIEKEKEGKQMSAGRRIASLQEAIEELKIGQEDIKKDINEKHKEILDILGHIKEAISDK 88

Query: 61  LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE 97
           L QK EGGEKQSQE LEKNKAPS SLELL ASL ++E
Sbjct: 89  LLQKEEGGEKQSQESLEKNKAPSSSLELLGASLEVLE 125

[Close]

BLAST of Clc08G05250 vs. NCBI nr
Match: XP_038880505.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MEIEKEKEGKQIS--IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAIN 60
           M+IEKEKEG++ +  IGR+IAS+QE IEELK+GQE IKKDI+EK+K+ILDILGHIKE+I+
Sbjct: 66  MDIEKEKEGRRKTNVIGRRIASLQEAIEELKRGQEDIKKDINEKHKEILDILGHIKESIS 125

Query: 61  G-LPQKGEGGEKQSQEPLEKNKAPSPSLELLDASLNLIE 97
             LPQK    EKQSQE LEKNKAPS SLELLDASL ++E
Sbjct: 126 DKLPQK----EKQSQESLEKNKAPSSSLELLDASLEVLE 160

[Close]

BLAST of Clc08G05250 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 14  IGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAING-LPQKGEGGEKQSQ 73
           I   I      IEELK+GQE IKKDI+EK+K+ILDILGHIK+AI+  LPQK EGGEKQSQ
Sbjct: 88  INNNIFKATGAIEELKRGQEDIKKDINEKHKEILDILGHIKKAISDKLPQKEEGGEKQSQ 147

Query: 74  EPLEKNKAPSPSLELLDASLNLIE 97
           E LEKNKAPS SLELLDASL ++E
Sbjct: 148 ESLEKNKAPSSSLELLDASLEVLE 171

[Close]

BLAST of Clc08G05250 vs. NCBI nr
Match: XP_038885971.1 (chromatin modification-related protein EAF7-like [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 8.4e-11
Identity = 41/56 (73.21%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1   MEIEKEKEGKQISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEA 57
           M+IEKEK+GKQ+SI R+I S+QE IEELK+GQE IKKDI EK+K+ILDILG+IK+A
Sbjct: 68  MDIEKEKKGKQMSIERRIVSLQEAIEELKRGQEDIKKDIIEKHKEILDILGYIKKA 123

[Close]

BLAST of Clc08G05250 vs. NCBI nr
Match: XP_038875107.1 (nucleophosmin-like [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 12 ISIGRKIASIQEEIEELKKGQEAIKKDIHEKYKKILDILGHIKEAIN 59
          +SIGR+IAS+QE IEELK+GQE IKKDI+EKYK+ILDILGHIKEAI+
Sbjct: 1  MSIGRRIASLQEAIEELKRGQEDIKKDINEKYKEILDILGHIKEAIS 47

The following BLAST results are available for this feature:

BLAST of Clc08G05250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876482.1	4.9e-27	77.32	glutamic acid-rich protein-like, partial [Benincasa hispida]	[more]
XP_038880505.1	1.9e-23	71.72	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_038891747.1	2.9e-19	71.43	pescadillo homolog [Benincasa hispida]	[more]
XP_038885971.1	8.4e-11	73.21	chromatin modification-related protein EAF7-like [Benincasa hispida]	[more]
XP_038875107.1	3.2e-10	80.85	nucleophosmin-like [Benincasa hispida]	[more]

BLAST of Clc08G05250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G05250.1	Clc08G05250.1	mRNA