Clc08G05110 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGTTTGTGTGGTTTTCTTTTTACCTTCTTTATTTACAGTTTTGATTTGATTTGTTTTGTGGGTTTCAATCTGATTTTTGTTTTGTGGGTCTTTTGCAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT Homology
BLAST of Clc08G05110 vs. NCBI nr
Match: KAG6579195.1 (hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016707.1 hypothetical protein SDJN02_21817 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29 Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0
BLAST of Clc08G05110 vs. NCBI nr
Match: KGN45959.1 (hypothetical protein Csa_005610 [Cucumis sativus]) HSP 1 Score: 133.7 bits (335), Expect = 7.3e-28 Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0
BLAST of Clc08G05110 vs. NCBI nr
Match: KAG6672509.1 (hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothetical protein I3843_16G063000 [Carya illinoinensis]) HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19 Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Clc08G05110 vs. NCBI nr
Match: KAG2664121.1 (hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothetical protein CIPAW_16G064600 [Carya illinoinensis]) HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19 Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Clc08G05110 vs. NCBI nr
Match: KAB2053274.1 (hypothetical protein ES319_A12G176500v1 [Gossypium barbadense] >KAG4170755.1 hypothetical protein ERO13_A12G167400v2 [Gossypium hirsutum] >TYG90571.1 hypothetical protein ES288_A12G192200v1 [Gossypium darwinii] >TYH96651.1 hypothetical protein ES332_A12G192200v1 [Gossypium tomentosum] >TYJ05689.1 hypothetical protein E1A91_A12G180700v1 [Gossypium mustelinum]) HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17 Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A0A0KAV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28 Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0
BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2MYL6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G192200v1 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17 Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5J5TET6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G176500v1 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17 Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2EBR0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G192200v1 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17 Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2WVW8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A12G180700v1 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17 Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of Clc08G05110 vs. TAIR 10
Match: AT1G68552.1 (conserved peptide upstream open reading frame 53 ) HSP 1 Score: 53.5 bits (127), Expect = 8.9e-08 Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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