Clc08G05110 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G05110
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionconserved peptide upstream open reading frame 53
LocationClcChr08: 15776489 .. 15776828 (+)
RNA-Seq ExpressionClc08G05110
SyntenyClc08G05110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGTTTGTGTGGTTTTCTTTTTACCTTCTTTATTTACAGTTTTGATTTGATTTGTTTTGTGGGTTTCAATCTGATTTTTGTTTTGTGGGTCTTTTGCAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA

mRNA sequence

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA

Coding sequence (CDS)

ATGTCGGCTGGGTTTGACTTGGCTGTGATTGGGGCTCTGTTGCAGCTCTGTTTTTCTTCCTTGCTTCTCTCTTGCTGTATGATTCTCTGCTCTTTCAAGCAGAGCCTCAATCTGGTGTTTTCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGATTCTCATTCCTTCTTTTGCTCTTCAGAAGAGGGGGTTTCACCTGA

Protein sequence

MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT
Homology
BLAST of Clc08G05110 vs. NCBI nr
Match: KAG6579195.1 (hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016707.1 hypothetical protein SDJN02_21817 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCF----SSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGV 60
          MSAGFDLAVIGALLQLCF    SSLLLSCCMILC FKQSLNLVF SVSMR RPKRTCSGV
Sbjct: 1  MSAGFDLAVIGALLQLCFSSSSSSLLLSCCMILCCFKQSLNLVFPSVSMRFRPKRTCSGV 60

Query: 61 KCFGAFHIKRF-SFLLLLFRRGGFT 81
          KCFGAFHIKRF SF+LLLFRRGGFT
Sbjct: 61 KCFGAFHIKRFSSFILLLFRRGGFT 85

BLAST of Clc08G05110 vs. NCBI nr
Match: KGN45959.1 (hypothetical protein Csa_005610 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 7.3e-28
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFG 60
          MSAGFDLAVIGALLQLCFSSLLL    IL SFKQSLNL+FSSVSMRLRPKRTCSGVKCFG
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLL----ILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFG 60

Query: 61 AFHIKRFSFLLLLFRRGGFT 81
          AFHIKRFSFLLLLFR+GGFT
Sbjct: 61 AFHIKRFSFLLLLFRKGGFT 76

BLAST of Clc08G05110 vs. NCBI nr
Match: KAG6672509.1 (hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothetical protein I3843_16G063000 [Carya illinoinensis])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRT 60
          MSAGFDL +IGALL+L       FS+L  +  CCM+LC F+Q LNLV+ SVSMRLRPKRT
Sbjct: 1  MSAGFDLVLIGALLKLWLFSVATFSALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKRT 60

Query: 61 CSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          CSGVKCFGAFHIKRF F L LF RGG T
Sbjct: 61 CSGVKCFGAFHIKRF-FSLFLFLRGGLT 87

BLAST of Clc08G05110 vs. NCBI nr
Match: KAG2664121.1 (hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothetical protein CIPAW_16G064600 [Carya illinoinensis])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQL------CFSSL--LLSCCMILCSFKQSLNLVFSSVSMRLRPKRT 60
          MSAGFDL +IGALL+L       FS+L  +  CCM+LC F+Q LNLV+ SVSMRLRPKRT
Sbjct: 1  MSAGFDLVLIGALLKLWLFSAATFSALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKRT 60

Query: 61 CSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          CSGVKCFGAFHIKRF F L LF RGG T
Sbjct: 61 CSGVKCFGAFHIKRF-FSLFLFLRGGLT 87

BLAST of Clc08G05110 vs. NCBI nr
Match: KAB2053274.1 (hypothetical protein ES319_A12G176500v1 [Gossypium barbadense] >KAG4170755.1 hypothetical protein ERO13_A12G167400v2 [Gossypium hirsutum] >TYG90571.1 hypothetical protein ES288_A12G192200v1 [Gossypium darwinii] >TYH96651.1 hypothetical protein ES332_A12G192200v1 [Gossypium tomentosum] >TYJ05689.1 hypothetical protein E1A91_A12G180700v1 [Gossypium mustelinum])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRL 60
          MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRL
Sbjct: 1  MSAEFDFALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          RPK++CSGV+CFG FHIK+  F L LF RG  T
Sbjct: 61 RPKKSCSGVECFGGFHIKQRFFYLFLFLRGAHT 93

BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A0A0KAV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSSLLLSCCMILCSFKQSLNLVFSSVSMRLRPKRTCSGVKCFG 60
          MSAGFDLAVIGALLQLCFSSLLL    IL SFKQSLNL+FSSVSMRLRPKRTCSGVKCFG
Sbjct: 1  MSAGFDLAVIGALLQLCFSSLLL----ILGSFKQSLNLLFSSVSMRLRPKRTCSGVKCFG 60

Query: 61 AFHIKRFSFLLLLFRRGGFT 81
          AFHIKRFSFLLLLFR+GGFT
Sbjct: 61 AFHIKRFSFLLLLFRKGGFT 76

BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2MYL6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G192200v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRL 60
          MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRL
Sbjct: 1  MSAEFDFALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          RPK++CSGV+CFG FHIK+  F L LF RG  T
Sbjct: 61 RPKKSCSGVECFGGFHIKQRFFYLFLFLRGAHT 93

BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5J5TET6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G176500v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRL 60
          MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRL
Sbjct: 1  MSAEFDFALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          RPK++CSGV+CFG FHIK+  F L LF RG  T
Sbjct: 61 RPKKSCSGVECFGGFHIKQRFFYLFLFLRGAHT 93

BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2EBR0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G192200v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRL 60
          MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRL
Sbjct: 1  MSAEFDFALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          RPK++CSGV+CFG FHIK+  F L LF RG  T
Sbjct: 61 RPKKSCSGVECFGGFHIKQRFFYLFLFLRGAHT 93

BLAST of Clc08G05110 vs. ExPASy TrEMBL
Match: A0A5D2WVW8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A12G180700v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLCFSS-------------LLLSCCMILCSFKQSLNLVFSSVSMRL 60
          MSA FD A+IGA LQLCFSS             LL   CMILC ++Q LN+VFS+VSMRL
Sbjct: 1  MSAEFDFALIGAQLQLCFSSSTTTVCARLFITALLAVSCMILCFYRQRLNIVFSTVSMRL 60

Query: 61 RPKRTCSGVKCFGAFHIKRFSFLLLLFRRGGFT 81
          RPK++CSGV+CFG FHIK+  F L LF RG  T
Sbjct: 61 RPKKSCSGVECFGGFHIKQRFFYLFLFLRGAHT 93

BLAST of Clc08G05110 vs. TAIR 10
Match: AT1G68552.1 (conserved peptide upstream open reading frame 53 )

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-08
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 1  MSAGFDLAVIGALLQLC---------FSSLLLSC---CMILCSFKQSLNLVFSSVSMRLR 60
          MSAGF+  VI +L+ +           SS L SC    +  C  KQ L L   S+SMRLR
Sbjct: 1  MSAGFESTVILSLIHISSPISSSSSPSSSSLKSCLLNALHFCCNKQRLVLETPSLSMRLR 60

Query: 61 PKRTCSGVKCFGAFHIK--RFSFLLL 73
          PKRTCS V+ FG FHIK  +FSF ++
Sbjct: 61 PKRTCSSVEVFGGFHIKQQKFSFFIV 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579195.12.3e-2989.41hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45959.17.3e-2891.25hypothetical protein Csa_005610 [Cucumis sativus][more]
KAG6672509.12.1e-1969.32hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothe... [more]
KAG2664121.12.1e-1969.32hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothe... [more]
KAB2053274.17.5e-1759.14hypothetical protein ES319_A12G176500v1 [Gossypium barbadense] >KAG4170755.1 hyp... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAV13.5e-2891.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1[more]
A0A5D2MYL63.7e-1759.14Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G192200v1 P... [more]
A0A5J5TET63.7e-1759.14Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G176500v1 PE... [more]
A0A5D2EBR03.7e-1759.14Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G192200v1 PE=... [more]
A0A5D2WVW83.7e-1759.14Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A12G180700v1 P... [more]
Match NameE-valueIdentityDescription
AT1G68552.18.9e-0846.51conserved peptide upstream open reading frame 53 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G05110.1Clc08G05110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane