Clc08G04020 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G04020
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chromo domain-containing protein
Location	ClcChr08: 11801592 .. 11802047 (-)
RNA-Seq Expression	Clc08G04020
Synteny	Clc08G04020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGCCTTTTCATCAAAACGAGGAAGACCCTGAAAGAGCCATCTCCAAGAGAGCCCCAACAGGGGTTGTGACTGAACATGACAAACAGGTTAAGGCCATCTTGGCACACAGGAGGGCAAGCAGACAAGGAGTCCCAAGTCGCATAGAATTTCTAGTGAAATGGCAGGGACTCCCCAACACCGAGATCAGTTGGGAAGATGAGGAGAACCTATGGCAATTCTCAAAACTGATCGAAGAATATTGAGAGCGACTATGCGACGATGGCGTTGCAGACATAAGTGGGGGAGGGTGTCACGTGCCAAAATCGCCCTCCAAATTTCGCATTGATGAGGCGCAAGTCCCCCTAGCAAAGCCAAGAGGGGACCGCAACATTGGCAATCGCAGCCCACCAAGAGACTCTGTGCGGGTGCTGTGCCCCACTGGCCCGCACAGCACCATGCATTCAACGTGA

mRNA sequence

ATGTTGAAGCCTTTTCATCAAAACGAGGAAGACCCTGAAAGAGCCATCTCCAAGAGAGCCCCAACAGGGGTTGTGACTGAACATGACAAACAGGTTAAGGCCATCTTGGCACACAGGAGGGCAAGCAGACAAGGAGTCCCAAGTCGCATAGAATTTCTAGTGAAATGGCAGGGACTCCCCAACACCGAGATCAACATAAGTGGGGGAGGGTGTCACGTGCCAAAATCGCCCTCCAAATTTCGCATTGATGAGGCGCAAGTCCCCCTAGCAAAGCCAAGAGGGGACCGCAACATTGGCAATCGCAGCCCACCAAGAGACTCTGTGCGGGTGCTGTGCCCCACTGGCCCGCACAGCACCATGCATTCAACGTGA

Coding sequence (CDS)

ATGTTGAAGCCTTTTCATCAAAACGAGGAAGACCCTGAAAGAGCCATCTCCAAGAGAGCCCCAACAGGGGTTGTGACTGAACATGACAAACAGGTTAAGGCCATCTTGGCACACAGGAGGGCAAGCAGACAAGGAGTCCCAAGTCGCATAGAATTTCTAGTGAAATGGCAGGGACTCCCCAACACCGAGATCAACATAAGTGGGGGAGGGTGTCACGTGCCAAAATCGCCCTCCAAATTTCGCATTGATGAGGCGCAAGTCCCCCTAGCAAAGCCAAGAGGGGACCGCAACATTGGCAATCGCAGCCCACCAAGAGACTCTGTGCGGGTGCTGTGCCCCACTGGCCCGCACAGCACCATGCATTCAACGTGA

Protein sequence

MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLPNTEINISGGGCHVPKSPSKFRIDEAQVPLAKPRGDRNIGNRSPPRDSVRVLCPTGPHSTMHST

Homology

[Close]

BLAST of Clc08G04020 vs. NCBI nr
Match: GEY98968.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 2   LKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLPN 61
           LKP+H++EEDPER +SKRAPT VVT +D++V+ IL+ R   R+GVPS  E+L+KW+ LP+
Sbjct: 592 LKPYHRDEEDPERGVSKRAPTAVVTSYDREVEEILSDRTIRRRGVPSYKEYLIKWRDLPD 651

Query: 62  TE------------------------INISGGGCHVP 75
           +E                         ++ GGGCHVP
Sbjct: 652 SEASWDPKDLLWQFADEIKRYHDEDVASLGGGGCHVP 688

[Close]

BLAST of Clc08G04020 vs. NCBI nr
Match: RVW19715.1 (hypothetical protein CK203_113928 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 9.2e-14
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 2   LKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLPN 61
           LKP+H++++DP R +SKRAPT VVT +DK+V+ I+A R   R+GVP   E+LVKW+GLP 
Sbjct: 59  LKPYHEDKDDPSRGLSKRAPTAVVTSYDKEVEHIIADRIIRRRGVPPATEYLVKWKGLPE 118

Query: 62  TEINISGGGCH--VPKSPSKFRIDEA 86
           +E +      +  VP +  +FR ++A
Sbjct: 119 SEASWEPANAYMAVPGADERFRAEDA 144

[Close]

BLAST of Clc08G04020 vs. NCBI nr
Match: KAA0041285.1 (uncharacterized protein E6C27_scaffold128G002770 [Cucumis melo var. makuwa] >TYK02749.1 uncharacterized protein E5676_scaffold145G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGVVTE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 122 MLKPFHEDQEDPNRSETSRAPTGVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 181

Query: 61  NTE 64
            +E
Sbjct: 182 ESE 184

[Close]

BLAST of Clc08G04020 vs. NCBI nr
Match: KAA0050130.1 (uncharacterized protein E6C27_scaffold675G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGV+TE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 830 MLKPFHEDQEDPNRSKTSRAPTGVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 889

Query: 61  NTE 64
            +E
Sbjct: 890 ESE 892

[Close]

BLAST of Clc08G04020 vs. NCBI nr
Match: KAA0042139.1 (uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa] >TYK18078.1 uncharacterized protein E5676_scaffold306G004140 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGVVTE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 378 MLKPFHEDKEDPNRSKTSRAPTGVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 437

Query: 61  NTE 64
            +E
Sbjct: 438 ESE 440

[Close]

BLAST of Clc08G04020 vs. ExPASy TrEMBL
Match: A0A438C8Y4 (Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_113928 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-14
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 2   LKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLPN 61
           LKP+H++++DP R +SKRAPT VVT +DK+V+ I+A R   R+GVP   E+LVKW+GLP 
Sbjct: 59  LKPYHEDKDDPSRGLSKRAPTAVVTSYDKEVEHIIADRIIRRRGVPPATEYLVKWKGLPE 118

Query: 62  TEINISGGGCH--VPKSPSKFRIDEA 86
           +E +      +  VP +  +FR ++A
Sbjct: 119 SEASWEPANAYMAVPGADERFRAEDA 144

[Close]

BLAST of Clc08G04020 vs. ExPASy TrEMBL
Match: A0A5D3BX70 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00030 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-14
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGVVTE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 122 MLKPFHEDQEDPNRSETSRAPTGVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 181

Query: 61  NTE 64
            +E
Sbjct: 182 ESE 184

[Close]

BLAST of Clc08G04020 vs. ExPASy TrEMBL
Match: A0A5D3D359 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004140 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.9e-14
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGVVTE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 378 MLKPFHEDKEDPNRSKTSRAPTGVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 437

Query: 61  NTE 64
            +E
Sbjct: 438 ESE 440

[Close]

BLAST of Clc08G04020 vs. ExPASy TrEMBL
Match: A0A5A7U4C8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001500 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.9e-14
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
           MLKPFH+++EDP R+ + RAPTGV+TE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 830 MLKPFHEDQEDPNRSKTSRAPTGVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 889

Query: 61  NTE 64
            +E
Sbjct: 890 ESE 892

[Close]

BLAST of Clc08G04020 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1    MLKPFHQNEEDPERAISKRAPTGVVTEHDKQVKAILAHRRASRQGVPSRIEFLVKWQGLP 60
            MLKPFH++ EDP R+ + RAPTGV+TE D+++K ILA R+  R+GVPS  E+L+ W+GLP
Sbjct: 1462 MLKPFHEDREDPNRSKTSRAPTGVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLP 1521

Query: 61   NTE 64
             +E
Sbjct: 1522 ESE 1524

The following BLAST results are available for this feature:

BLAST of Clc08G04020 vs. NCBI nr


Match Name	E-value	Identity	Description
GEY98968.1	2.4e-14	44.33	hypothetical protein [Tanacetum cinerariifolium]	[more]
RVW19715.1	9.2e-14	46.51	hypothetical protein CK203_113928 [Vitis vinifera]	[more]
KAA0041285.1	1.6e-13	58.73	uncharacterized protein E6C27_scaffold128G002770 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0050130.1	2.0e-13	57.14	uncharacterized protein E6C27_scaffold675G001500 [Cucumis melo var. makuwa]	[more]
KAA0042139.1	2.0e-13	58.73	uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Clc08G04020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G04020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438C8Y4	4.5e-14	46.51	Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_113928 PE=4...	[more]
A0A5D3BX70	7.6e-14	58.73	Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3D359	9.9e-14	58.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4C8	9.9e-14	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VEX8	1.7e-13	57.14	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]

BLAST of Clc08G04020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	CDD	cd00024	CD_CSD	coord: 32..63 e-value: 5.81192E-5 score: 36.3009
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 16..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G04020.1	Clc08G04020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006479	protein methylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008276	protein methyltransferase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity