Clc08G03540 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G03540
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionvoltage-gated hydrogen channel 1
LocationClcChr08: 9627336 .. 9628606 (-)
RNA-Seq ExpressionClc08G03540
SyntenyClc08G03540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGATATTTTAATTCAAAAAAAATTTGAACTTCTCAAACTTCCAACCTCTTAATTGAGGACATGTAACTTTTAATAAAGGGACTTATCTCAAATGAATCAACAAATGTGGTAAATAAATTAAAAAAGTAAGATTTTTTTTTATTTGACAATATATATAAATAAATAAATCAAGCCTAAAGTTCGAGACTGATAGTACAAATTTTATGTCGAAAAATTAGTAGAAGGTTTTGCGAATGAATTATGCTTCAAGCATTAATTTACCTTTCACCACACCACATGATTTTGAAGCCGCCCACTTCTCTCCTAACGTAACCTCCACACCATGTTAATGGTTTTGTCTTCCATTTCCATATTTAAAGTTTGAACCCATTCCATTGATATCACATCACAACCGTACCTCATCCACTTTCCCATGGCTATTCTCTCTAACTTCTTAAACTTACCATCTCCGCCGGAATCCGCTACCACTGCCGCCACCACCATCATCGAATCCTTAGAATCGTCTATCAATGATGTTATGAAACTCTACAAAAGACGTCGAAAATGGCGAGCTCTCTTCGCCGCCCCAAATCCAAATAGCATTGACACATTTTCGTCATGGAGAGTCCATTTGATCACCTTCCTCGAATCCACGCCTGCTCATGTCGTCACCATCGTTCTCCTCATAATGGACCTTATCATCACCGTCCTCGAACTTTCTTCGTCGTTAATATCCTGTGGCTCGCACGGGAAAGAAGAAGAAAAAGCTTTGTACTTTCATTGGGTGAGCATTGCCATCTTGAGCTTTCTCTCTGCGAAGGCGGCGGTTCTGATGGTGGGGCTGGGCCGCTCGTTCTTTAGACGGCCAGGCTGTGTTGTTGATGGCGTGGTAGCAGTCGTGGCGTTGGTTTTGGAGGTGGCGGCGGAGAGGAAAGGCGGCGGAGTGATAATGGTGGCAAGTTTGTGGAGGCTTGTGAGGGTGGTAGAGAGTGCTTTTGAGCTAAGTGATGATGCCATTGAAGTGAAGATTGAAGAAATAGTTTGGGAGTTAGAAAGAATGAAAGAAGAAATAAGAAGAGAGAAAGACAAGGATGAGGTGATAGAGATGCTTTAAGGGAAGAGTTGAATCATTTGCAAAACTATAATTCTTAGTAATCTTTAAGTTTGGTTTTTCATATACTCTCTCTATATATTTAATTATATAGCCTCACATATTTGATTTGGGCATATTTTGTTTGTATATATAATTTTATTTATTTTAATTTATTGTTGGGAATTCAATTTATTTC

mRNA sequence

TTTTGATATTTTAATTCAAAAAAAATTTGAACTTCTCAAACTTCCAACCTCTTAATTGAGGACATGTAACTTTTAATAAAGGGACTTATCTCAAATGAATCAACAAATGTGGTAAATAAATTAAAAAAGTAAGATTTTTTTTTATTTGACAATATATATAAATAAATAAATCAAGCCTAAAGTTCGAGACTGATAGTACAAATTTTATGTCGAAAAATTAGTAGAAGGTTTTGCGAATGAATTATGCTTCAAGCATTAATTTACCTTTCACCACACCACATGATTTTGAAGCCGCCCACTTCTCTCCTAACGTAACCTCCACACCATGTTAATGGTTTTGTCTTCCATTTCCATATTTAAAGTTTGAACCCATTCCATTGATATCACATCACAACCGTACCTCATCCACTTTCCCATGGCTATTCTCTCTAACTTCTTAAACTTACCATCTCCGCCGGAATCCGCTACCACTGCCGCCACCACCATCATCGAATCCTTAGAATCGTCTATCAATGATGTTATGAAACTCTACAAAAGACGTCGAAAATGGCGAGCTCTCTTCGCCGCCCCAAATCCAAATAGCATTGACACATTTTCGTCATGGAGAGTCCATTTGATCACCTTCCTCGAATCCACGCCTGCTCATGTCGTCACCATCGTTCTCCTCATAATGGACCTTATCATCACCGTCCTCGAACTTTCTTCGTCGTTAATATCCTGTGGCTCGCACGGGAAAGAAGAAGAAAAAGCTTTGTACTTTCATTGGGTGAGCATTGCCATCTTGAGCTTTCTCTCTGCGAAGGCGGCGGTTCTGATGGTGGGGCTGGGCCGCTCGTTCTTTAGACGGCCAGGCTGTGTTGTTGATGGCGTGGTAGCAGTCGTGGCGTTGGTTTTGGAGGTGGCGGCGGAGAGGAAAGGCGGCGGAGTGATAATGGTGGCAAGTTTGTGGAGGCTTGTGAGGGTGGTAGAGAGTGCTTTTGAGCTAAGTGATGATGCCATTGAAGTGAAGATTGAAGAAATAGTTTGGGAGTTAGAAAGAATGAAAGAAGAAATAAGAAGAGAGAAAGACAAGGATGAGGTGATAGAGATGCTTTAAGGGAAGAGTTGAATCATTTGCAAAACTATAATTCTTAGTAATCTTTAAGTTTGGTTTTTCATATACTCTCTCTATATATTTAATTATATAGCCTCACATATTTGATTTGGGCATATTTTGTTTGTATATATAATTTTATTTATTTTAATTTATTGTTGGGAATTCAATTTATTTC

Coding sequence (CDS)

ATGGCTATTCTCTCTAACTTCTTAAACTTACCATCTCCGCCGGAATCCGCTACCACTGCCGCCACCACCATCATCGAATCCTTAGAATCGTCTATCAATGATGTTATGAAACTCTACAAAAGACGTCGAAAATGGCGAGCTCTCTTCGCCGCCCCAAATCCAAATAGCATTGACACATTTTCGTCATGGAGAGTCCATTTGATCACCTTCCTCGAATCCACGCCTGCTCATGTCGTCACCATCGTTCTCCTCATAATGGACCTTATCATCACCGTCCTCGAACTTTCTTCGTCGTTAATATCCTGTGGCTCGCACGGGAAAGAAGAAGAAAAAGCTTTGTACTTTCATTGGGTGAGCATTGCCATCTTGAGCTTTCTCTCTGCGAAGGCGGCGGTTCTGATGGTGGGGCTGGGCCGCTCGTTCTTTAGACGGCCAGGCTGTGTTGTTGATGGCGTGGTAGCAGTCGTGGCGTTGGTTTTGGAGGTGGCGGCGGAGAGGAAAGGCGGCGGAGTGATAATGGTGGCAAGTTTGTGGAGGCTTGTGAGGGTGGTAGAGAGTGCTTTTGAGCTAAGTGATGATGCCATTGAAGTGAAGATTGAAGAAATAGTTTGGGAGTTAGAAAGAATGAAAGAAGAAATAAGAAGAGAGAAAGACAAGGATGAGGTGATAGAGATGCTTTAA

Protein sequence

MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTFSSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSIAILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRLVRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML
Homology
[Close]
BLAST of Clc08G03540 vs. NCBI nr
Match: XP_038886538.1 (voltage-gated hydrogen channel 1 [Benincasa hispida])

HSP 1 Score: 367.1 bits (941), Expect = 1.1e-97
Identity = 198/226 (87.61%), Postives = 211/226 (93.36%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  SP +SATT  TT IESLESSI+DV+KLY+RR+KWR+LF APN NSIDTF
Sbjct: 1   MAILSNFLNSTSPLQSATTTTTT-IESLESSIHDVVKLYERRKKWRSLFVAPNTNSIDTF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLIT LESTPAHV+TIVLL+MDLIITVLELSSSLISCGSHGKEEEK LYFHWVSI
Sbjct: 61  SSWRVHLITLLESTPAHVITIVLLVMDLIITVLELSSSLISCGSHGKEEEKMLYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           AILSFLSAK   LMVGLG SFFRR GCVVDGVVAVVALVLEVAAERKGGGVIM+ASLWRL
Sbjct: 121 AILSFLSAKTTALMVGLGCSFFRRSGCVVDGVVAVVALVLEVAAERKGGGVIMMASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRR+K+KDE++EML
Sbjct: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRRQKEKDELMEML 225

[Close]
BLAST of Clc08G03540 vs. NCBI nr
Match: XP_011656484.2 (voltage-gated hydrogen channel 1 [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 1.7e-93
Identity = 190/226 (84.07%), Postives = 206/226 (91.15%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  SP +S TTA T  IESLESSI+DV+KLY+RRRKWRALF +P PN+ D F
Sbjct: 1   MAILSNFLNSSSPLQSVTTATT--IESLESSIHDVVKLYERRRKWRALFFSPIPNNFDAF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLITFLESTPAH++TI LL+MDLIITVLELSSSLISCGSHGK+EEKA YFHWVSI
Sbjct: 61  SSWRVHLITFLESTPAHIITIFLLVMDLIITVLELSSSLISCGSHGKDEEKASYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           +ILSFLSAK A LM+GLGRSFFRRPGCVVDGVVA+VALVLEV AERKGGGVIMVASLWRL
Sbjct: 121 SILSFLSAKTAALMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFE+SDD IEVKIE IVWELE+MKEEIRREK+KD  IEML
Sbjct: 181 VRVVESAFEISDDTIEVKIEGIVWELEKMKEEIRREKEKD-TIEML 223

[Close]
BLAST of Clc08G03540 vs. NCBI nr
Match: XP_008464327.1 (PREDICTED: voltage-gated hydrogen channel 1 [Cucumis melo] >KAA0043124.1 voltage-gated hydrogen channel 1 [Cucumis melo var. makuwa] >TYK23909.1 voltage-gated hydrogen channel 1 [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.4e-91
Identity = 181/226 (80.09%), Postives = 204/226 (90.27%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  S  +S TTA T  IESLE SI+D+ KLY+RRRKWRALF +P PN+ DTF
Sbjct: 1   MAILSNFLNSSSTLQSVTTATT--IESLELSIHDIAKLYERRRKWRALFFSPIPNNFDTF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLITFLESTPAH++T+ LL+MDLIIT+LELSSSLISCGSHGK+EEKA YFHWVSI
Sbjct: 61  SSWRVHLITFLESTPAHIITVFLLVMDLIITLLELSSSLISCGSHGKDEEKASYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           +IL+FLSAK+A +M+GLG SFFRRPGCVVDGVVA+VAL+LE  AERKGGGVIMVASLWRL
Sbjct: 121 SILTFLSAKSAAVMLGLGLSFFRRPGCVVDGVVAIVALILEAVAERKGGGVIMVASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFE+SDD IEVKIE IVWELERMKEEIRREK+KD++ EML
Sbjct: 181 VRVVESAFEISDDVIEVKIEGIVWELERMKEEIRREKEKDKITEML 224

[Close]
BLAST of Clc08G03540 vs. NCBI nr
Match: XP_022992388.1 (voltage-gated hydrogen channel 1 [Cucurbita maxima])

HSP 1 Score: 282.7 bits (722), Expect = 2.7e-72
Identity = 155/225 (68.89%), Postives = 183/225 (81.33%), Query Frame = 0 

Query: 4   LSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTFSSW 63
           +++  + P+PPE    AA + I++LE SI +VMKL +RR KW  LFA P PN+ +  SSW
Sbjct: 1   MADLSSSPTPPEPPAAAAAS-IQALELSIQNVMKLNQRRIKWHTLFATPIPNTSNPLSSW 60

Query: 64  RVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGS--HGKEEEKALYFHWVSIA 123
           R HLITFLESTP+H++TIVLL+MDLI+TVLELSSSLISC S    K EE+ + FHWVSIA
Sbjct: 61  RSHLITFLESTPSHLITIVLLLMDLIVTVLELSSSLISCNSPVSHKREEEVMGFHWVSIA 120

Query: 124 ILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRLV 183
           ILS LS K   L+VGLG SFFR+PGCVVDGVV  VAL LEVAA+R+GGGVIMV SLWR+V
Sbjct: 121 ILSLLSTKTVALVVGLGLSFFRQPGCVVDGVVVAVALGLEVAAKRRGGGVIMVGSLWRIV 180

Query: 184 RVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           RVVESAFELSDDAIE KIE IVWELE MKEEIRREK+KDEVI+++
Sbjct: 181 RVVESAFELSDDAIEAKIEGIVWELEGMKEEIRREKEKDEVIDLV 224

[Close]
BLAST of Clc08G03540 vs. NCBI nr
Match: XP_023548408.1 (voltage-gated hydrogen channel 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 1.2e-70
Identity = 153/220 (69.55%), Postives = 178/220 (80.91%), Query Frame = 0 

Query: 9   NLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTFSSWRVHLI 68
           +L S P  A  A+   I++LE SI +VMKL +RRR+W  LFA P PN+ +  SSWR HLI
Sbjct: 3   DLSSSPTPAEPASAASIQALELSIQNVMKLNQRRRQWHTLFATPIPNTTNPLSSWRSHLI 62

Query: 69  TFLESTPAHVVTIVLLIMDLIITVLELSSSLISCG---SHGKEEEKALYFHWVSIAILSF 128
           TFLESTP+H++TIVLL+ DLI+TVLELSSSLISC    SH K EE+ + FHWVSIAILS 
Sbjct: 63  TFLESTPSHLITIVLLLTDLIVTVLELSSSLISCNLPVSH-KREEEVMGFHWVSIAILSL 122

Query: 129 LSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRLVRVVE 188
           LS K   ++VGLG SFFRRPGCVVDGVV  VAL LEVAA+R+GGGVIMV SLWR+VRVVE
Sbjct: 123 LSTKTVAMVVGLGLSFFRRPGCVVDGVVVGVALGLEVAAKRRGGGVIMVGSLWRIVRVVE 182

Query: 189 SAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEM 226
           SAFELSDDAIE KIE IVWELE MKEEIRREK+KDEV+++
Sbjct: 183 SAFELSDDAIEAKIEGIVWELEGMKEEIRREKEKDEVLDL 221

[Close]
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match: A0A0A0KDR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022330 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.0e-94
Identity = 190/226 (84.07%), Postives = 206/226 (91.15%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  SP +S TTA T  IESLESSI+DV+KLY+RRRKWRALF +P PN+ D F
Sbjct: 1   MAILSNFLNSSSPLQSVTTATT--IESLESSIHDVVKLYERRRKWRALFFSPIPNNFDAF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLITFLESTPAH++TI LL+MDLIITVLELSSSLISCGSHGK+EEKA YFHWVSI
Sbjct: 61  SSWRVHLITFLESTPAHIITIFLLVMDLIITVLELSSSLISCGSHGKDEEKASYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           +ILSFLSAK A LM+GLGRSFFRRPGCVVDGVVA+VALVLEV AERKGGGVIMVASLWRL
Sbjct: 121 SILSFLSAKTAALMLGLGRSFFRRPGCVVDGVVAIVALVLEVVAERKGGGVIMVASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFE+SDD IEVKIE IVWELE+MKEEIRREK+KD  IEML
Sbjct: 181 VRVVESAFEISDDTIEVKIEGIVWELEKMKEEIRREKEKD-TIEML 223

[Close]
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match: A0A5A7TIF8 (Voltage-gated hydrogen channel 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00070 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 181/226 (80.09%), Postives = 204/226 (90.27%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  S  +S TTA T  IESLE SI+D+ KLY+RRRKWRALF +P PN+ DTF
Sbjct: 1   MAILSNFLNSSSTLQSVTTATT--IESLELSIHDIAKLYERRRKWRALFFSPIPNNFDTF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLITFLESTPAH++T+ LL+MDLIIT+LELSSSLISCGSHGK+EEKA YFHWVSI
Sbjct: 61  SSWRVHLITFLESTPAHIITVFLLVMDLIITLLELSSSLISCGSHGKDEEKASYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           +IL+FLSAK+A +M+GLG SFFRRPGCVVDGVVA+VAL+LE  AERKGGGVIMVASLWRL
Sbjct: 121 SILTFLSAKSAAVMLGLGLSFFRRPGCVVDGVVAIVALILEAVAERKGGGVIMVASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFE+SDD IEVKIE IVWELERMKEEIRREK+KD++ EML
Sbjct: 181 VRVVESAFEISDDVIEVKIEGIVWELERMKEEIRREKEKDKITEML 224

[Close]
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match: A0A1S3CLN2 (voltage-gated hydrogen channel 1 OS=Cucumis melo OX=3656 GN=LOC103502240 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 181/226 (80.09%), Postives = 204/226 (90.27%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTF 60
           MAILSNFLN  S  +S TTA T  IESLE SI+D+ KLY+RRRKWRALF +P PN+ DTF
Sbjct: 1   MAILSNFLNSSSTLQSVTTATT--IESLELSIHDIAKLYERRRKWRALFFSPIPNNFDTF 60

Query: 61  SSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGSHGKEEEKALYFHWVSI 120
           SSWRVHLITFLESTPAH++T+ LL+MDLIIT+LELSSSLISCGSHGK+EEKA YFHWVSI
Sbjct: 61  SSWRVHLITFLESTPAHIITVFLLVMDLIITLLELSSSLISCGSHGKDEEKASYFHWVSI 120

Query: 121 AILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRL 180
           +IL+FLSAK+A +M+GLG SFFRRPGCVVDGVVA+VAL+LE  AERKGGGVIMVASLWRL
Sbjct: 121 SILTFLSAKSAAVMLGLGLSFFRRPGCVVDGVVAIVALILEAVAERKGGGVIMVASLWRL 180

Query: 181 VRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           VRVVESAFE+SDD IEVKIE IVWELERMKEEIRREK+KD++ EML
Sbjct: 181 VRVVESAFEISDDVIEVKIEGIVWELERMKEEIRREKEKDKITEML 224

[Close]
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match: A0A6J1JZ21 (voltage-gated hydrogen channel 1 OS=Cucurbita maxima OX=3661 GN=LOC111488710 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.3e-72
Identity = 155/225 (68.89%), Postives = 183/225 (81.33%), Query Frame = 0 

Query: 4   LSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAPNPNSIDTFSSW 63
           +++  + P+PPE    AA + I++LE SI +VMKL +RR KW  LFA P PN+ +  SSW
Sbjct: 1   MADLSSSPTPPEPPAAAAAS-IQALELSIQNVMKLNQRRIKWHTLFATPIPNTSNPLSSW 60

Query: 64  RVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISCGS--HGKEEEKALYFHWVSIA 123
           R HLITFLESTP+H++TIVLL+MDLI+TVLELSSSLISC S    K EE+ + FHWVSIA
Sbjct: 61  RSHLITFLESTPSHLITIVLLLMDLIVTVLELSSSLISCNSPVSHKREEEVMGFHWVSIA 120

Query: 124 ILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRLV 183
           ILS LS K   L+VGLG SFFR+PGCVVDGVV  VAL LEVAA+R+GGGVIMV SLWR+V
Sbjct: 121 ILSLLSTKTVALVVGLGLSFFRQPGCVVDGVVVAVALGLEVAAKRRGGGVIMVGSLWRIV 180

Query: 184 RVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKDEVIEML 227
           RVVESAFELSDDAIE KIE IVWELE MKEEIRREK+KDEVI+++
Sbjct: 181 RVVESAFELSDDAIEAKIEGIVWELEGMKEEIRREKEKDEVIDLV 224

[Close]
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match: A0A6J1D8I2 (uncharacterized protein LOC111018597 OS=Momordica charantia OX=3673 GN=LOC111018597 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.8e-69
Identity = 153/226 (67.70%), Postives = 180/226 (79.65%), Query Frame = 0 

Query: 1   MAILSNFLNLPSPPESATTAATTIIESLESSINDVMKLYKRRRKWRALFAAP---NPNSI 60
           MA LSNF++  SPP+ AT + +  +ESLE SI DV+KL ++RR+WR LFAAP   N N +
Sbjct: 1   MANLSNFVHRSSPPQPATGSPS--LESLEFSIQDVIKLSEKRRRWRTLFAAPIQTNRNRL 60

Query: 61  DTFSSWRVHLITFLESTPAHVVTIVLLIMDLIITVLELSSSLISC---GSHGKEEEKALY 120
           DT + W+  L+ FLESTPAHVVTI+LL+MDL ITVLELSSSLISC    +H K  ++ LY
Sbjct: 61  DTSAPWQTQLVAFLESTPAHVVTIILLLMDLTITVLELSSSLISCSLSANHKKGAKEVLY 120

Query: 121 FHWVSIAILSFLSAKAAVLMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMV 180
           FHWV IAILS LSAK   L VGLG  F R+PGC+VDGVVAVVALVLEV AERKGGGVI+V
Sbjct: 121 FHWVGIAILSLLSAKTVALAVGLGGLFLRQPGCIVDGVVAVVALVLEVVAERKGGGVIIV 180

Query: 181 ASLWRLVRVVESAFELSDDAIEVKIEEIVWELERMKEEIRREKDKD 221
           ASLWRLVRVVES FELSDDAIE KIE IV ELER++EE RREK+++
Sbjct: 181 ASLWRLVRVVESVFELSDDAIEGKIEAIVLELERVEEETRREKEQE 224

[Close]
BLAST of Clc08G03540 vs. TAIR 10
Match: AT1G10800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-21
Identity = 52/98 (53.06%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 133 LMVGLGRSFFRRPGCVVDGVVAVVALVLEVAAERKGGGVIMVASLWRLVRVVESAFELSD 192
           L+V +G+SFF++PGCV+DG +A+VAL+L+V  E+KG G I+V SLWR++RVVE+AFELSD
Sbjct: 3   LVVAMGKSFFKQPGCVMDGTLAIVALILQVLLEKKGTGFIVVVSLWRVLRVVETAFELSD 62

Query: 193 DAIEVKIEEIVWELERMKEE----IRREKDKDEVIEML 227
           +AIEV+I+ I+ + + + +E    +    +KDEVI+ML
Sbjct: 63  EAIEVQIDGIISQFQALSKENRTLLETLAEKDEVIKML 100

The following BLAST results are available for this feature:
BLAST of Clc08G03540 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886538.11.1e-9787.61voltage-gated hydrogen channel 1 [Benincasa hispida][more]
XP_011656484.21.7e-9384.07voltage-gated hydrogen channel 1 [Cucumis sativus][more]
XP_008464327.13.4e-9180.09PREDICTED: voltage-gated hydrogen channel 1 [Cucumis melo] >KAA0043124.1 voltage... [more]
XP_022992388.12.7e-7268.89voltage-gated hydrogen channel 1 [Cucurbita maxima][more]
XP_023548408.11.2e-7069.55voltage-gated hydrogen channel 1 [Cucurbita pepo subsp. pepo][more]
BLAST of Clc08G03540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G03540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDR38.0e-9484.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022330 PE=4 SV=1[more]
A0A5A7TIF81.7e-9180.09Voltage-gated hydrogen channel 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CLN21.7e-9180.09voltage-gated hydrogen channel 1 OS=Cucumis melo OX=3656 GN=LOC103502240 PE=4 SV... [more]
A0A6J1JZ211.3e-7268.89voltage-gated hydrogen channel 1 OS=Cucurbita maxima OX=3661 GN=LOC111488710 PE=... [more]
A0A6J1D8I26.8e-6967.70uncharacterized protein LOC111018597 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
BLAST of Clc08G03540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10800.14.0e-2153.06unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availablePANTHERPTHR46480:SF2F20B24.22coord: 20..225
IPR027359Voltage-dependent channel domain superfamilyGENE3D1.20.120.350coord: 65..190
e-value: 3.7E-10
score: 41.8
IPR031846Voltage-gated hydrogen channel 1PANTHERPTHR46480F20B24.22coord: 20..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G03540.1Clc08G03540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0005887 integral component of plasma membrane
molecular_function GO:0030171 voltage-gated proton channel activity