Clc08G03140 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G03140
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF3511)
Location	ClcChr08: 7315405 .. 7317308 (+)
RNA-Seq Expression	Clc08G03140
Synteny	Clc08G03140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGTGAGTTTTTTTTTTTTTTTCCCTTTTTTGATCTTTATGTAAACAATGGCATTTTCTGTCTCTGAAGACTTGGAACCAAATTCAACATATAATTAAAGAGTTTGGAAGGTGTGTGTTTGGCTGTGGCTTTTGTTTCCTCATGCAAATATATAAGCCTTTTGTTGCAACATATACAAAACCATTCACCTCTAATTTTAGTGATCTTATTTTTGCTGTTTGCTTTTGCGCTTTTTTTTTTTTTTTTTAATTGTTTATTTTAGGTTAAATTTTAAAGATACTCCTCTTGAGTGGTTTCAATTATAGCTGTGAACTTATAAATTTTTTATAAAGTTTGAAGTTTGTTGCAAAATAATCTTGGTACCATAAAAGGAAGAGTATAAATTTATCTGCTTATGTAAACTACACACATACATGGAAAAGAATAATAATGGTACTTAGAACATTTGTGAACCATAGTTGTTATCGTCTTTCTCCTTTCAACCTCAAGCCAATCAATTTTATATTTTTCCGTTAATGATTTTTTCATTAACCCTAACCACTCTATGTACGTAATTAGATTTGTTTATTTAAGTAACAAATAAGCAAGTACATACTTTCCCATCCATAAATTTAACAATAGAAACTTTCCCAGGGTGGTTTTAGAAAAAAAGAATCAAACTTCAAGTGTTTATATGAACATTTTCAAAGTTTATGAAGATGATTGAATCCACAGAATTTTTGGTAACTTAACCTTTATTTTAAATAATATGCCTTTTTAAATACATATTATAAAAATAGTTCCTGGAAGGGGTTGAATAAACAATAAGTTGGAGTGAGTTGAAAGTGAGTAAAATTTTACATTTTTTTTAAAATCTTCATTATAGTTGTAGTAATGCAAATTAATAAATATAGACACAATACACTATTTTTTATTTTTTTATCGGTTGTTTATGATTTTATTTGGTGTAATATGTAAATAGAAATTCTGACAAAATAAAATTAGGGTTGTTTTCATTACCAAAATGAACCAAACTATTTACAAATATAAAGAAATTTTACTATCTATTCGTGATAAACTGTGATAAACTTCTATCGCGACAGATAGACAATAAAATTTTTTTATATTTATAAATAGTTTGATGTTTTTTCTATTTATAATAAAATTTCTATAAAATTATATATCTTAACAATTGTTTTCTATTGTACATTTTCTTAATAGACAGTAGTGGGAGATTTGAGCTACAAACTTCTCAATCGCTAACCTAAGCTATATGTCAAATTGAATTATGCTTATTTTGATTTTTCTACGGTACCTTTTCATAACGCCAACAATTTCAATGTTTATTTGTTATCCATGACAAATGACAATTCAATAGAAAAATCTAATTCGGTTTACATTTTTCAATCTAAATTTATAACTTTGCATTATTTATCTACTTATTTTAAAATATGTGTATTTCTAATCTATTTTTATGATTCAATCAAAATAAACGAAAGTTTAGATTGGATATTGGAGTATATTCTTTTTCTTTTTTATCCCCTTAATGCAAATGAAAAGTTATTTGAAAAAAAGGAAAAAAAGAAAAGAAAAATTTAAAGACTTTTGTTCACATTTTCAGGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

mRNA sequence

ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA

Protein sequence

MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRFMNYEDSLPKMCH

Homology

[Close]

BLAST of Clc08G03140 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 2.7e-35
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTGKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.7e-35
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 80/87 (91.95%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of Clc08G03140 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Clc08G03140 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.4e-34
Identity = 80/87 (91.95%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          MENKVKSSVKNSFKWIKTKFSDIRY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of Clc08G03140 vs. ExPASy TrEMBL
Match: A0A2P5BV48 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60
          MEKS+SF +YSS+ SGEFGF+ RSNSYNFNGP  K +GF TS+DPELQRK+RIASYNVF 
Sbjct: 1  MEKSRSFPEYSSAYSGEFGFRERSNSYNFNGPCQKGSGFVTSSDPELQRKKRIASYNVFT 60

Query: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 88
          ME KVKSSV+NSFKWIK+KFSDIRYG+
Sbjct: 61 MEGKVKSSVRNSFKWIKSKFSDIRYGV 87

[Close]

BLAST of Clc08G03140 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-17
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MEKSKSFSKYSSS-TSGEFGF-QTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNV 60
          M+ SKS+++YSSS ++ EFG+ Q RSNSYNFNGP         + DPE++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSSVKNSFKWIKTKFSDIRYGLRF 90
          F  E K+KS++KNSFKWIK KFS     +R+
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFSGDDNSIRY 85

[Close]

BLAST of Clc08G03140 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 10  YSSSTSGEFGFQT----RSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKV 69
           YS+ST   +   T     SN+ +      K  GF    + E+QRK+R+ASYNV+ +E +V
Sbjct: 45  YSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRV 104

Query: 70  KSSVKNSFKWIKTKFSDIRYGL 88
           K S+K SFKW K   S+  YGL
Sbjct: 105 KGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of Clc08G03140 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 10  YSSSTSGEF-----GFQTRSNSYNFNGPTAKATGFSTS---ADPELQRKRRIASYNVFNM 69
           Y  +  G+F      + TR N+  ++    K+   S S    DPELQRK+R+ASY ++ +
Sbjct: 20  YHGNQGGDFRSYSASYGTRENNI-YDVKKEKSIARSKSWGITDPELQRKKRVASYKMYGV 79

Query: 70  ENKVKSSVKNSFKWIKTKFSDIRYG 87
           E KVK S +NSF+W+K +++ + YG
Sbjct: 80  EGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of Clc08G03140 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 44  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL 88
           DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Sbjct: 81  DPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHGI 124

[Close]

BLAST of Clc08G03140 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 43  ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDI 84
           +D E++RK+RIA Y  + +E KVKS++KN F+WIK K   I
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQI 106

The following BLAST results are available for this feature:

BLAST of Clc08G03140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45893.1	1.3e-37	98.85	hypothetical protein Csa_005289 [Cucumis sativus]	[more]
KAA0039168.1	3.7e-37	97.70	Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]	[more]
XP_023536368.1	2.7e-35	94.25	uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]	[more]
XP_022930185.1	2.7e-35	94.25	uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothet...	[more]
XP_022974055.1	1.1e-33	91.95	uncharacterized protein LOC111472683 [Cucurbita maxima]	[more]

BLAST of Clc08G03140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G03140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y3	6.2e-38	98.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1	[more]
A0A5A7T8F8	1.8e-37	97.70	Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuw...	[more]
A0A6J1EWA0	1.3e-35	94.25	uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1ICY9	5.4e-34	91.95	uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683...	[more]
A0A2P5BV48	1.2e-28	78.16	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE...	[more]

BLAST of Clc08G03140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	2.7e-17	53.85	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	1.7e-08	41.46	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	5.1e-08	37.65	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.6e-06	45.45	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.8e-06	51.22	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..86 e-value: 6.4E-24 score: 83.5
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..82
None	No IPR available	PANTHER	PTHR33193:SF7	OS06G0686600 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G03140.1	Clc08G03140.1	mRNA