Clc08G02980 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G02980
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Polyadenylate-binding protein 1-B-binding protein
Location	ClcChr08: 6261600 .. 6262627 (-)
RNA-Seq Expression	Clc08G02980
Synteny	Clc08G02980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAAGAAATGGAAGTAAAACTTGGAAAGATGCAATTTCTTGGGATCTTTGGAATTCTCCAAGAAGCCTACAAGATCATCTACACATGGAGGAAAATATTTTCCCAAATCACTCTATTATTAATCTTCCCTCTATCTCTCTTCTTCTTGGCTTACACCCACATTTCCTACCATATGATTCAAAATCTTCACTTCCAAATAAATCAAACCAAATTCCAGAAAGGTTTTCCAAGATTTGTCAAGATTTCCGACCTTGTCGTGTCGTACGAATTGGCCTATTTTTGCCTCTTCATCGTCATGATCTACAATATCTTTCTCACCATCATTTCTATCCCTTCTACCTCCGTCGTAACCTATGTCGTCGCATGTATATACACCGACGACGACAAAGTTTCTTTCAAGCACAGCTTGAAAATTGTCACCAAGGTTTGGAGACGAGTAATGATCACATCTTTTTATACCTTAGGATTCACTTTCACTTACGACTCGGTGGCGGTTTGTGTTCTTCCTTTGATGATTCGAGTGATCTCTTTAGATATGGATTTTACTGGTACATCAAAGCTGCAATATTAATTGTGTTTATGGCGATGTATATTGTGGGATCGTTGTATCTAACCACAATATGGATGTTATCGAAGGTTGTTTCTGTGTTGGAAGAGTCGTATGGATTCAAAGCATTAATGAAAAGCCAAAGGCTATTGAGAGGGAAGATGGTGGTCGCAACGTTCCTACTATTTTTTATAATTTTAATTTTGGGAGTTGTTCAGTTATTATACAAGACGGTGGTTGTTCGTGGGGTTGTGTTGGGGATGATAAGTAAGAGTATTTTGTGGATTTTTTGTTTAGGGTTGCTTATCAATTTCTTGTTGTTAAAGGTTGTTGTGCTAACGGTATTGTATTTCGTTTGCAAATCATACCATCGTGAGAATATCGACATGTCAGATCATCTCTCAGGTCTCGCCGAAGTTTATGTGTCAATAAAGGCAAATGATGTTTGGGTCGACACCGAGAGGCTACTAGTGTGA

mRNA sequence

ATGCAACAAGAAATGGAAGTAAAACTTGGAAAGATGCAATTTCTTGGGATCTTTGGAATTCTCCAAGAAGCCTACAAGATCATCTACACATGGAGGAAAATATTTTCCCAAATCACTCTATTATTAATCTTCCCTCTATCTCTCTTCTTCTTGGCTTACACCCACATTTCCTACCATATGATTCAAAATCTTCACTTCCAAATAAATCAAACCAAATTCCAGAAAGGTTTTCCAAGATTTGTCAAGATTTCCGACCTTGTCGTGTCGTACGAATTGGCCTATTTTTGCCTCTTCATCGTCATGATCTACAATATCTTTCTCACCATCATTTCTATCCCTTCTACCTCCGTCGTAACCTATGTCGTCGCATGTATATACACCGACGACGACAAAGTTTCTTTCAAGCACAGCTTGAAAATTGTCACCAAGGTTTGGAGACGAGTAATGATCACATCTTTTTATACCTTAGGATTCACTTTCACTTACGACTCGGTGGCGGTTTGTGTTCTTCCTTTGATGATTCGAGTGATCTCTTTAGATATGGATTTTACTGTCGTATGGATTCAAAGCATTAATGAAAAGCCAAAGGCTATTGAGAGGGAAGATGGTGGTCGCAACTTATTATACAAGACGGTGGTTGTTCGTGGGGTTGTGTTGGGGATGATAAGTAAGAGTCTCGCCGAAGTTTATGTGTCAATAAAGGCAAATGATGTTTGGGTCGACACCGAGAGGCTACTAGTGTGA

Coding sequence (CDS)

ATGCAACAAGAAATGGAAGTAAAACTTGGAAAGATGCAATTTCTTGGGATCTTTGGAATTCTCCAAGAAGCCTACAAGATCATCTACACATGGAGGAAAATATTTTCCCAAATCACTCTATTATTAATCTTCCCTCTATCTCTCTTCTTCTTGGCTTACACCCACATTTCCTACCATATGATTCAAAATCTTCACTTCCAAATAAATCAAACCAAATTCCAGAAAGGTTTTCCAAGATTTGTCAAGATTTCCGACCTTGTCGTGTCGTACGAATTGGCCTATTTTTGCCTCTTCATCGTCATGATCTACAATATCTTTCTCACCATCATTTCTATCCCTTCTACCTCCGTCGTAACCTATGTCGTCGCATGTATATACACCGACGACGACAAAGTTTCTTTCAAGCACAGCTTGAAAATTGTCACCAAGGTTTGGAGACGAGTAATGATCACATCTTTTTATACCTTAGGATTCACTTTCACTTACGACTCGGTGGCGGTTTGTGTTCTTCCTTTGATGATTCGAGTGATCTCTTTAGATATGGATTTTACTGTCGTATGGATTCAAAGCATTAATGAAAAGCCAAAGGCTATTGAGAGGGAAGATGGTGGTCGCAACTTATTATACAAGACGGTGGTTGTTCGTGGGGTTGTGTTGGGGATGATAAGTAAGAGTCTCGCCGAAGTTTATGTGTCAATAAAGGCAAATGATGTTTGGGTCGACACCGAGAGGCTACTAGTGTGA

Protein sequence

MQQEMEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNLHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFTVVWIQSINEKPKAIEREDGGRNLLYKTVVVRGVVLGMISKSLAEVYVSIKANDVWVDTERLLV

Homology

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BLAST of Clc08G02980 vs. NCBI nr
Match: XP_038885958.1 (uncharacterized protein LOC120076261 [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-67
Identity = 177/325 (54.46%), Postives = 202/325 (62.15%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           MEVKL KMQFLGIFGILQEAYKIIYTWRKIFSQITL LIFPLSLFFLAY HIS HM Q +
Sbjct: 1   MEVKLEKMQFLGIFGILQEAYKIIYTWRKIFSQITLFLIFPLSLFFLAYIHISNHMAQKI 60

Query: 65  HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVAC 124
            FQI QTK QKG PRFV +SDLV+SYELAYF LFI+ +Y+IFLTIISIPSTSVVT+VVAC
Sbjct: 61  LFQITQTKSQKGPPRFVNLSDLVMSYELAYFSLFII-VYSIFLTIISIPSTSVVTHVVAC 120

Query: 125 IYTDD-DKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDF 184
           IYTDD +KVSF  SLK+VTKVW+RVMITSFY+LGF+FTYDSVA CVL L+ RVI     F
Sbjct: 121 IYTDDNEKVSFTRSLKVVTKVWKRVMITSFYSLGFSFTYDSVAACVLLLIFRVIIFRYRF 180

Query: 185 -----------------------TVVW----IQSINEKP---KAIERED--------GGR 244
                                  + +W    I S+ E+    KA+ +             
Sbjct: 181 YWHIKASILIVFMVMYMVGSLYLSTIWMLSKIVSVLEESYGFKALMKSQRLFRGKMVAAT 240

Query: 245 NLLYKTVVVRGVVLGMISK----------------------------------------- 248
            L++  VVV G +LGMISK                                         
Sbjct: 241 ILIFFQVVVCGALLGMISKSVLGIFCLVLFIHFLLYKVVVLTILYFVCKLYHREDIDMSD 300

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BLAST of Clc08G02980 vs. NCBI nr
Match: XP_022153679.1 (uncharacterized protein LOC111021136 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-45
Identity = 108/166 (65.06%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M++KL KMQFLG FGILQEA+KII+TWRKIFSQITL  IFPLSLFFLAY HI  HMI+N 
Sbjct: 1   MDIKLQKMQFLGAFGILQEAHKIIFTWRKIFSQITLFFIFPLSLFFLAYLHIFNHMIRNF 60

Query: 65  HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVAC 124
            FQI  TK QK  P+F+ +SDLV+SY+ AY  LF V  Y+ FL+++SIPST+ V Y VA 
Sbjct: 61  LFQIILTKTQKDPPKFINLSDLVMSYKWAYLWLFTV-AYSGFLSVVSIPSTASVAYAVAS 120

Query: 125 IYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL 171
           IYT + + SFK SLK V KVW+RV++TSFYTL F+ TY SVA  VL
Sbjct: 121 IYTGNGEASFKDSLKAVAKVWKRVLVTSFYTLTFSLTYSSVAALVL 165

[Close]

BLAST of Clc08G02980 vs. NCBI nr
Match: XP_021605622.1 (uncharacterized protein LOC110610059 [Manihot esculenta] >OAY58380.1 hypothetical protein MANES_02G173000v8 [Manihot esculenta])

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-24
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLGIFGI +E+YKII+TWRKIFSQITL LI PLS  FLA+  IS  +  N+
Sbjct: 1   MDREQEEMQFLGIFGIYKESYKIIFTWRKIFSQITLALILPLSFIFLAHIQISDLIFSNI 60

Query: 65  ---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYV 124
               FQ++QT+   G  R+ K++DL +S E  YF LF +  +  FL I S+ ST+ V Y 
Sbjct: 61  IHDEFQLDQTRV--GSARYNKLNDL-ISSEWTYFWLFKIAYFTFFL-IFSLLSTAAVVYT 120

Query: 125 VACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDM 184
           VACIYT  D V+F   + +V KVW+R+MIT        F Y+ VA  +    I ++S D 
Sbjct: 121 VACIYTGRD-VTFSKVISVVPKVWKRLMITFLCIFAAIFAYNVVAFLIFIAWIIMVS-DS 178

Query: 185 DFTV 186
            F V
Sbjct: 181 SFAV 178

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BLAST of Clc08G02980 vs. NCBI nr
Match: KAE9584761.1 (hypothetical protein Lalb_Chr25g0281621 [Lupinus albus])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +
Sbjct: 1   MDREQDEMQFLGFFGILKESSKIIYSWRKIFSQITFTLILPLSFIFLIHIELSDLIFNKI 60

Query: 65  HFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVA 124
           H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y  FL I S+ STS V Y +A
Sbjct: 61  HHNKSQISETQSGTPRYEKLSDMITS-EWITFWLF-KMVYFTFLLIFSLLSTSAVVYTIA 120

Query: 125 CIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL 173
           CIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Sbjct: 121 CIYTAKE-VTFKKVISVVPKVWKRLMLTFLCTFAAFFAYNLITLVVIIL 166

[Close]

BLAST of Clc08G02980 vs. NCBI nr
Match: KAF1866066.1 (hypothetical protein Lal_00013503 [Lupinus albus])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +
Sbjct: 1   MDREQDEMQFLGFFGILKESSKIIYSWRKIFSQITFTLILPLSFIFLIHIELSDLIFNKI 60

Query: 65  HFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVA 124
           H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y  FL I S+ STS V Y +A
Sbjct: 61  HHNKSQISETQSGTPRYEKLSDMITS-EWITFWLF-KMVYFTFLLIFSLLSTSAVVYTIA 120

Query: 125 CIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL 173
           CIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Sbjct: 121 CIYTAKE-VTFKKVISVVPKVWKRLMLTFLCTFAAFFAYNLITLVVIIL 166

[Close]

BLAST of Clc08G02980 vs. ExPASy TrEMBL
Match: A0A6J1DJT8 (uncharacterized protein LOC111021136 OS=Momordica charantia OX=3673 GN=LOC111021136 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 108/166 (65.06%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M++KL KMQFLG FGILQEA+KII+TWRKIFSQITL  IFPLSLFFLAY HI  HMI+N 
Sbjct: 1   MDIKLQKMQFLGAFGILQEAHKIIFTWRKIFSQITLFFIFPLSLFFLAYLHIFNHMIRNF 60

Query: 65  HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVAC 124
            FQI  TK QK  P+F+ +SDLV+SY+ AY  LF V  Y+ FL+++SIPST+ V Y VA 
Sbjct: 61  LFQIILTKTQKDPPKFINLSDLVMSYKWAYLWLFTV-AYSGFLSVVSIPSTASVAYAVAS 120

Query: 125 IYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVL 171
           IYT + + SFK SLK V KVW+RV++TSFYTL F+ TY SVA  VL
Sbjct: 121 IYTGNGEASFKDSLKAVAKVWKRVLVTSFYTLTFSLTYSSVAALVL 165

[Close]

BLAST of Clc08G02980 vs. ExPASy TrEMBL
Match: A0A2C9WH67 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G173000 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLGIFGI +E+YKII+TWRKIFSQITL LI PLS  FLA+  IS  +  N+
Sbjct: 1   MDREQEEMQFLGIFGIYKESYKIIFTWRKIFSQITLALILPLSFIFLAHIQISDLIFSNI 60

Query: 65  ---HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYV 124
               FQ++QT+   G  R+ K++DL +S E  YF LF +  +  FL I S+ ST+ V Y 
Sbjct: 61  IHDEFQLDQTRV--GSARYNKLNDL-ISSEWTYFWLFKIAYFTFFL-IFSLLSTAAVVYT 120

Query: 125 VACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDM 184
           VACIYT  D V+F   + +V KVW+R+MIT        F Y+ VA  +    I ++S D 
Sbjct: 121 VACIYTGRD-VTFSKVISVVPKVWKRLMITFLCIFAAIFAYNVVAFLIFIAWIIMVS-DS 178

Query: 185 DFTV 186
            F V
Sbjct: 181 SFAV 178

[Close]

BLAST of Clc08G02980 vs. ExPASy TrEMBL
Match: A0A6A4N751 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0281621 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +
Sbjct: 1   MDREQDEMQFLGFFGILKESSKIIYSWRKIFSQITFTLILPLSFIFLIHIELSDLIFNKI 60

Query: 65  HFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVA 124
           H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y  FL I S+ STS V Y +A
Sbjct: 61  HHNKSQISETQSGTPRYEKLSDMITS-EWITFWLF-KMVYFTFLLIFSLLSTSAVVYTIA 120

Query: 125 CIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL 173
           CIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Sbjct: 121 CIYTAKE-VTFKKVISVVPKVWKRLMLTFLCTFAAFFAYNLITLVVIIL 166

[Close]

BLAST of Clc08G02980 vs. ExPASy TrEMBL
Match: A0A6A5LX26 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00013503 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+ +  +MQFLG FGIL+E+ KIIY+WRKIFSQIT  LI PLS  FL +  +S  +   +
Sbjct: 1   MDREQDEMQFLGFFGILKESSKIIYSWRKIFSQITFTLILPLSFIFLIHIELSDLIFNKI 60

Query: 65  HFQINQ-TKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVA 124
           H   +Q ++ Q G PR+ K+SD++ S E   F LF  M+Y  FL I S+ STS V Y +A
Sbjct: 61  HHNKSQISETQSGTPRYEKLSDMITS-EWITFWLF-KMVYFTFLLIFSLLSTSAVVYTIA 120

Query: 125 CIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPL 173
           CIYT  + V+FK  + +V KVW+R+M+T   T    F Y+ + + V+ L
Sbjct: 121 CIYTAKE-VTFKKVISVVPKVWKRLMLTFLCTFAAFFAYNLITLVVIIL 166

[Close]

BLAST of Clc08G02980 vs. ExPASy TrEMBL
Match: M5VKD3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G014200 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-23
Identity = 77/176 (43.75%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHIS-YHMIQN 64
           M+ +  ++QFLGIFGI +EAYKI+++WRKIFSQITL LI PLS  FLA+  +S   +++ 
Sbjct: 1   MDREQDELQFLGIFGICKEAYKIVFSWRKIFSQITLTLILPLSFIFLAHIELSNILLLKI 60

Query: 65  LHFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVA 124
           +H +    +     PR+ ++SD V+S E A F LF   +Y  FL I S+ STS V Y +A
Sbjct: 61  IHNERVLDRTNTNSPRYQRVSD-VISSEWATFWLF-KAVYFTFLLIFSLLSTSAVVYTIA 120

Query: 125 CIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISL 180
           CIYT  + ++++  + +V KVW+RVM+T F T    F Y+ VA  VL + +  ++L
Sbjct: 121 CIYTGRE-ITYRKVMSVVPKVWKRVMVTFFCTFMAFFAYNIVAFIVLIIWLVSVAL 173

[Close]

BLAST of Clc08G02980 vs. TAIR 10
Match: AT5G44860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M++   ++QFL I GIL+E+  I     K F  ITL LIFPLS   LA++  +    Q +
Sbjct: 1   MDLAAEELQFLNIQGILRESTTIPKFSPKTFYLITLTLIFPLSFAILAHSLFT----QPI 60

Query: 65  HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVVAC 124
             Q++ T            SD   +       L    IY IFL   S+ ST+ V + VA 
Sbjct: 61  LAQLDAT----------PPSDQSKTNHEWTLLLIYQFIYVIFLFAFSLLSTAAVVFTVAS 120

Query: 125 IYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMDFT 184
           +YT    VSF  ++  +  V +R+ IT  +       Y+S  V +L L++ ++++D+   
Sbjct: 121 LYT-GKPVSFSSTMSAIPLVLKRLFITFLWVSLMMLVYNS--VFLLFLVVLIVAIDLQSV 170

Query: 185 VVWIQSI 192
           ++ + S+
Sbjct: 181 ILAVFSM 170

[Close]

BLAST of Clc08G02980 vs. TAIR 10
Match: AT4G19950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 53/189 (28.04%), Postives = 93/189 (49.21%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M++   ++QFL   GIL+E+  I     K F  ITL LIFPLS   LA++  +  ++  +
Sbjct: 1   MDLAPEELQFLNKRGILRESTSIPQYSLKTFYLITLTLIFPLSFAILAHSLFTQPILAQI 60

Query: 65  --HFQINQTKFQKGFPRFVKISDLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVV 124
             + Q +Q++ Q  +   +          +  FC      Y IFL   S+ ST+ V + V
Sbjct: 61  DTYPQADQSQLQHEWTVLL----------VFQFC------YIIFLFAFSLLSTAAVVFTV 120

Query: 125 ACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLDMD 184
           A +YT    VSF  ++  +  V +R+ IT  +       Y++V +  L  +I  +++D+ 
Sbjct: 121 ASLYT-GKPVSFSSTMSAIPLVLKRLFITFLWVSLLMLAYNTVFLIFLVTLI--VAVDLQ 170

Query: 185 FTVVWIQSI 192
             V+ + S+
Sbjct: 181 NVVLAVFSL 170

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BLAST of Clc08G02980 vs. TAIR 10
Match: AT1G31130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.8e-04
Identity = 55/178 (30.90%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 5   MEVKLGKMQFLGIFGILQEAYKIIYTWRKIFSQITLLLIFPLSLFFLAYTHISYHMIQNL 64
           M+++  ++QFL I  +LQE+  I     + F  ITL  IFPLS   LA+         +L
Sbjct: 1   MDLQPEELQFLTIPQLLQESISIKKRSPRTFYLITLSFIFPLSFAILAH---------SL 60

Query: 65  HFQINQTKFQKGFPRFVKIS--DLVVSYELAYFCLFIVMIYNIFLTIISIPSTSVVTYVV 124
             Q    K  K  P     S  D  V        L     Y IFL   S+ ST+ V + V
Sbjct: 61  FTQPILAKLDKSDPPNSDRSRHDWTV-------LLIFQFSYLIFLFAFSLLSTAAVVFTV 120

Query: 125 ACIYTDDDKVSFKHSLKIVTKVWRRVMITSFYTLGFTFTYDSVAVCVLPLMIRVISLD 181
           A +YT    VSF  +L  + KV++R+ IT  +     F Y++V    L +++  + L+
Sbjct: 121 ASLYT-GKPVSFSSTLSAIPKVFKRLFITFLWVALLMFAYNAVFFVFLVMLLVALDLN 161

The following BLAST results are available for this feature:

BLAST of Clc08G02980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885958.1	1.3e-67	54.46	uncharacterized protein LOC120076261 [Benincasa hispida]	[more]
XP_022153679.1	2.4e-45	65.06	uncharacterized protein LOC111021136 [Momordica charantia]	[more]
XP_021605622.1	3.0e-24	46.74	uncharacterized protein LOC110610059 [Manihot esculenta] >OAY58380.1 hypothetica...	[more]
KAE9584761.1	1.5e-23	45.56	hypothetical protein Lalb_Chr25g0281621 [Lupinus albus]	[more]
KAF1866066.1	1.5e-23	45.56	hypothetical protein Lal_00013503 [Lupinus albus]	[more]

BLAST of Clc08G02980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G02980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJT8	1.2e-45	65.06	uncharacterized protein LOC111021136 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A2C9WH67	1.5e-24	46.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G173000 PE=4 SV=...	[more]
A0A6A4N751	7.3e-24	45.56	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0281621 PE=4 SV=1	[more]
A0A6A5LX26	7.3e-24	45.56	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00013503 PE=4 SV=1	[more]
M5VKD3	6.2e-23	43.75	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G014200 PE=4 SV=1	[more]

BLAST of Clc08G02980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44860.1	1.5e-05	29.95	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G19950.1	1.3e-04	28.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G31130.1	2.8e-04	30.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133:SF51	PROTEIN, PUTATIVE-RELATED	coord: 5..178
None	No IPR available	PANTHER	PTHR33133	OS08G0107100 PROTEIN-RELATED	coord: 5..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G02980.2	Clc08G02980.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane