Clc08G02450 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G02450
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RAB GTPase homolog C2A
Location	ClcChr08: 4816709 .. 4820975 (-)
RNA-Seq Expression	Clc08G02450
Synteny	Clc08G02450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGCAGCCGTTTTCTTGTGAGGTCCTCTGGCGCTTTATTCTCCTTTCAATCCAAAATGTTCATTGAAGGAAACCACGTCGCCATAGCCATCTATAAATGCATTTCTCTCTTTTCCCGTTTTCCCTTTTCAACTCCATTTTCTTCAACCATTGCTTCATCCACTGAGCTACGGAACTTAGAATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTACTCCCAATCTCTCTCATCCCTTACAAAATTAAGGGATTTAGTTTCATTGTTTGTGTTGCATTATGCTTCTTCTAGTAGGTTTCCTTTGGTGTTTAGTTGATTGTTATCCATTAACTTCACTTTAATAGACAAAGTAAGGGAGTCGGAAGTATTTATTGGATTGAGGAAAGTTGAGGCGATTTGTGGAATTGACTTTATTCTGATTAGTTGTTTAAAGGGGGTATTTGTGTTTATTGTCATCTATAGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGGTAATGAATTGAATGTGATGGATCTCTGTTTTACATTTTTTTTTTAATGATTTCTATTTTGGAGTTGAACATTGAATTTTTGGATCGTTTTGAAGTTTTAAATATAGGCCAAAACATATTTTCAGTTCATCTGTCTTTCTTAACTATTTTGTCTCTATACTTGACAAATATTAGGATCGAACATCTGGGGTTACATATATTTTTGGGATCTAGGCATTTTGATAGATAGGTAACTGAATCACTTTTAATTTTTGATAAGTTATTTTCTATGAAAAAATGAAATTTCATTGTGATACTTTTTGAAAGGGCTAAATAATATATTGTAATAGAAAATTATTATAAATAGAAAAAATATCAAACTATTTACCAATATAGCAAAATTTTATTTTCTATATGTGATAGACTACGATAGACCCACATGTCTATCTGGGTCTATCGTCGTCTATCACAGATAGAAATTAAAATTTTGCTATATTTGTAATTATTTTCAACCGTCTTTTTATTTTTGAAAATATCCCTATTTTAATAGATTGTGAGCAGGGAGGAAAAGGTTTCCTTTATTTATTATTATTATTTCCTAGAAGAAGGTAACTGGAGCAGTGGGATTTTGACTCTTGGAGGAATTTTGCAACCAACTGTCGTTGCCAGTTGGGAACCGCTTTTTGGTCTTTGATCTGTTAATTTAAGTTGCAAGTACACTTTCTTGCCCTTAATGACTTAATTACTGGAGATATTTGTGTTCTCCATGGATGTAAAGCTTGCTTGACTATAAATATAAACTACAAAACTATTCTCTCAAAAGACGGATGACTTTCTAAAGCATTTAAATTGTCTATTCAAAATTTTTTGGAAGAATTGAACTAATAATTTAATTTTACTTAAAGAAAGGTGGCTGACTTTCTAAAGATTTAACATGGTGCAGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGGTAAGCTATCAAATGGCACTCTTCTGCTTTGACTTAAATGCATTCTGTGATTTACTGTCAGCTCTCGAGTCCATTGAATGTGCTAAACATATCAAACGATGTTATTATAATGAAGCTTAGTTTCTTTGGAAAGTGCTAGTAGTGTTTTGATTGAGCCTGATAATACCATTGAATTAGGAGAAGGATGTCAAAATATAGTTCGTTATTTTTCTTCTTGTGCTCGAATCCTCTTTTGCAATTAACTGAAGTGGAAACTCTGTATTGATTCCTTTTGTTGAATTCTCCCTGAACAAGTTCTTTCAGCCATTTGATGAGCACTCATGGAGGCACTGAAGTTGCACAGTCTAGCTTGACATACTGCTTTTCTGAAGTTGCTTGATTAGGAATTGAAATATCTGATTGATTGGTTTTTTATTTTTTTCTTTTTTTCTTTTTTTTGGGGGGGGGGGGGGGGGGATAGAACTTTACTTTTTATGTTTTATTTTACCTTTTCCTTTCTTTTCCATTTCCTCTTCTTATAGCAGTGTACATTATTACTAATTGAATCAAAGCGGAGCACATCAAATTCTCTTCAAATTCTAGAGTGACAGTTAGTTGTCAAATATGTTAGTTCTCGTCAGATTCTTTAGATCCTAAAGTATGAGCTCATGAAGAATTCTAGGGTGGCACTTTTTCATACTACACTATCTTTGGTCTACTGACATTGTATTTTCGTTTGTCTTAGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGTGAGTCCTTTGTATCTCTTAAGTCTTACCACACTCGTAGTCAATCCAGTTTATAAATGTATTAACTAGAGTTTCTACATTAATAATGGATGAAAAATGATGGATCAGACACTAATGATTTTGGCCAAAATTGCATGATAATCTGATACGATTTCAGACCATTTAATATAGACGACGTTTTGTTTTGTTATTTCCCCTCCCTGCAATAATCTGCAAAGTAGAAATAATCTATACTGCAGATTTAAGGTCCATCTAAAAGAAAAATGTCAGTGCACACAATTTTTCATTTTTATGTGTTGCAATAATCTTAGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGGTACTTTTTAACGCGACAGTTATCATCTAATTACATTAGAAAGAAACCCGATGACATTTACTGGTGAATGTGATAAGTAGAGACATAGCAGACTAGCTGGTGGTGGATGCAGAAAATAGTTTTAAAAGTTGAGTTTGAAAATGGTTGCTTCATTCTTCCTTTTTAATATTACAAATGCGTAACTGTTTAACGAAACTTTTAGCCAATAATAATAGCAATCAGTTCTAGGGGCGGAGCCACAGGGAGGGGCAAGATTCTGTATTTTACTTCTTGATACGTATAATTTTTCAGTTATGAGCAATTAGGAGGGTGGATATAAGTGAAAATGCGTAAAAATGTTAAGGTTGCGGAAGAACTACCTTTTTAGTCCTTAAGTCATCAATAATAGGTACATTTAGTCCCAAAAGTTTCAAAATATACCCTCTTAATCCCTGAGTTTTTAAGAATAAGCTTAAATGGACCTATTTTATTTTTATTATTTTTAAGGTTGAGATGATATTTTTAAATTAAAAAGAATGATTACAAAATTATCTCTCTTCTCTCCTTCTCCTGCCACCCTCTTCCATTTTCTTATTTAATTATTGTTTCTTTGGTAAAATAACAATAATAAAAATATAAGAAACGTTTTAAGCTTATTCTTAAAAATTTAGGGACTAAAAAGGGTATATTTTAAAATCTTAGGACCCGTTTCTAACTCAGGTACTAAAAAGATAATTTTCCCTAATTTTTTTTATATAATTTTCTCGGTTTAAGACAAGGCAAGAGGGTGCAATTCCCCTCTCCCCTTCCTTCTTTGCTCCTTGGCTCCGCCGTTGATCAATTCTAGATAGCAATTTCGAATGCTTTTCTCTGTAGAAAATTTCGCAAGCAGCACGTTTAGAATTGTCTTCATGTAAAGGGATCTCCCAAGAATCTGAGATATGAAACTATTGTTTAGAAACTTCCCATATGCAAATGTTGTTTGTAATTGTTGTGCAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAGAAAGCAACTTATATAATAATAACCACATCATTGTATATGTAAATTTATTCTCTCACTCTGTTGCTTTCCCCATTCAGTTGTAAGTTATTATTTGTACTATCTGAAAGGGAAAAAAACTCGCTTATAATTACATTGATTTGCTTTGTGTAAAGCTAAATTCTTTTCTGCATCCTTGCAAAGTTTGCAAAACAAGGTACAAATATGGAAAATCTAGAAACATTTAAAACAATTTGTAGTTATAGCAACATCAGTTTTTCTTTTTCCTC

mRNA sequence

CGTGCAGCCGTTTTCTTGTGAGGTCCTCTGGCGCTTTATTCTCCTTTCAATCCAAAATGTTCATTGAAGGAAACCACGTCGCCATAGCCATCTATAAATGCATTTCTCTCTTTTCCCGTTTTCCCTTTTCAACTCCATTTTCTTCAACCATTGCTTCATCCACTGAGCTACGGAACTTAGAATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAGAAAGCAACTTATATAATAATAACCACATCATTGTATATGTAAATTTATTCTCTCACTCTGTTGCTTTCCCCATTCAGTTGTAAGTTATTATTTGTACTATCTGAAAGGGAAAAAAACTCGCTTATAATTACATTGATTTGCTTTGTGTAAAGCTAAATTCTTTTCTGCATCCTTGCAAAGTTTGCAAAACAAGGTACAAATATGGAAAATCTAGAAACATTTAAAACAATTTGTAGTTATAGCAACATCAGTTTTTCTTTTTCCTC

Coding sequence (CDS)

ATGGGATCGCCCTCCGCCCAGATCAATGCCTACGATCTCTCATTTAAGGTTCTCCTCATCGGCGATTCCGGCGTCGGCAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTCTCGACCATCTCACTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGATTGAAGCTGACTATTTGGGATACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACCCAAGGGATCATTCTTGTTTATGATGTGACCCGGAGAGAAACTTTTACAAACTTATTAGATGTATGGGCAAGTGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTTGTTGGAAACAAAGTTGATAAAGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTGTTGTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG

Protein sequence

MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLEERSTVVKRNILRQKQEGQAQQSGGCCS

Homology

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BLAST of Clc08G02450 vs. NCBI nr
Match: XP_038884336.1 (ras-related protein RABC2a-like isoform X2 [Benincasa hispida])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 200/211 (94.79%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS+QINAY LSFKVLLIGDSGVGKSSLLHTFISASL  LTPTIGVDFKIKQLTIGGK
Sbjct: 25  MGSPSSQINAYHLSFKVLLIGDSGVGKSSLLHTFISASLHDLTPTIGVDFKIKQLTIGGK 84

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWA+EVELYLTDQD
Sbjct: 85  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWANEVELYLTDQD 144

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELA+KIMEVP
Sbjct: 145 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAVKIMEVP 204

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERST++KRNILRQKQE QAQ SGGCCS
Sbjct: 205 SFLEERSTMLKRNILRQKQESQAQHSGGCCS 235

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BLAST of Clc08G02450 vs. NCBI nr
Match: XP_022925432.1 (ras-related protein RABC2a-like [Cucurbita moschata] >XP_023535218.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo] >KAG6592319.1 Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025141.1 Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS QI+ YDLSFKVLLIGDSGVGKSSLLHTFISAS+D+LTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETFTNLLDVWA+EVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESERAVSREDGIALANKLGSLFLECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS+VVKRN+LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 211

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BLAST of Clc08G02450 vs. NCBI nr
Match: XP_022973510.1 (ras-related protein RABC2a-like [Cucurbita maxima] >XP_022973511.1 ras-related protein RABC2a-like [Cucurbita maxima])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS QI+ YDLSFKVLLIGDSGVGKSSLLHTFISAS+D+LTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETFTNLLDVWA+EVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESE AVSREDGIALANKLGSLFLECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESESAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS+VVKRN+LRQKQEGQ Q+SGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQEGQGQRSGGCCS 211

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BLAST of Clc08G02450 vs. NCBI nr
Match: XP_022143972.1 (ras-related protein RABC2a-like [Momordica charantia])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 191/211 (90.52%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS SA   AYDLSFKVLLIGDSGVGKSSLL TF+S+SL  L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSAHTAAYDLSFKVLLIGDSGVGKSSLLLTFVSSSLLDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRE+F NL D+WA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFINLSDIWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERSTV+KRNILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSTVIKRNILRQKQEGQAQQSGGCCS 211

[Close]

BLAST of Clc08G02450 vs. NCBI nr
Match: XP_008463077.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis melo] >KAA0034999.1 ras-related protein RABC2a-like [Cucumis melo var. makuwa] >TYK02339.1 ras-related protein RABC2a-like [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 4.9e-100
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKR+ILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.1e-89
Identity = 163/211 (77.25%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL+DVW  E+ELY T+Q+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CV+MLVGNKVD+ESER VSRE+GIALA +L  +FLECSA+TR+NVE+CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKRNIL+QK E Q     GCCS
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

[Close]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.5e-78
Identity = 151/211 (71.56%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY T+ D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKR     K + +A Q G CCS
Sbjct: 181 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

[Close]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-74
Identity = 143/212 (67.45%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q   +D  FKVLLIGDSGVGKSSLL +F S + D L+PTIGVDFK+K LTIG K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           +LKL IWDTAGQERFR+LTSSYYRG QGII+VYDVTRR+TFTNL D+WA E++LY T+QD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVDKESERAVS+++GI  A + G LFLECSAKTR NVE+CFEEL +KI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SFLEERSTVVKRNILRQK-QEGQAQQSGGCCS 212
           S   E S+  K+NI +Q   +  +  S  CCS
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

[Close]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot
Match: Q6DHC1 (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.9e-49
Identity = 108/200 (54.00%), Postives = 136/200 (68.00%), Query Frame = 0


Query: 14  SFKVLLIGDSGVGKSSLLHTFISASLD-HLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQ 73
           + K+L+IG+SGVGKSSLL  F   + D  L  TIGVDFK+K + I G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 74  ERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLVGNKVDK 133
           ERFR+LT SYYRG QG+ILVYDVT+R+TFT  L+ W +E+E Y T  D VKMLVGNK+DK
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTK-LENWLNELETYCTRNDLVKMLVGNKIDK 127

Query: 134 ESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLEERSTVVKR 193
           ++ R V R +G+  A K   LF+E SAKTR+ V+  FEEL  KI++ P   E  S++   
Sbjct: 128 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE--SSIQNH 187

Query: 194 NILRQKQEGQAQQS-GGCCS 212
            +     E Q Q + GG CS
Sbjct: 188 GVQLSDNEPQRQGACGGYCS 203

[Close]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.2e-49
Identity = 100/178 (56.18%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 8   INAYDLSFKVLLIGDSGVGKSSLLHTFISASLDH-LTPTIGVDFKIKQLTIGGKRLKLTI 67
           ++++D +FKVLL+GDSGVGKS +L  F S   +   T TIGVDFK+K LT  GKR KLTI
Sbjct: 3   VDSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTI 62

Query: 68  WDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQDCVKMLV 127
           WDTAGQERFR+LTSSYYRG QGII VYDVTRR+TF +L   W  E ++Y T +  +KM+V
Sbjct: 63  WDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVV 122

Query: 128 GNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVPSFLE 185
            NKVD  ++R VS E+G   A + G LF+E SA+    V + FEEL +KI++ P  LE
Sbjct: 123 ANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180

[Close]

BLAST of Clc08G02450 vs. ExPASy TrEMBL
Match: A0A6J1I8U9 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111472047 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.5e-105
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS QI+ YDLSFKVLLIGDSGVGKSSLLHTFISAS+D+LTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETFTNLLDVWA+EVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESE AVSREDGIALANKLGSLFLECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESESAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS+VVKRN+LRQKQEGQ Q+SGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQEGQGQRSGGCCS 211

[Close]

BLAST of Clc08G02450 vs. ExPASy TrEMBL
Match: A0A6J1EBP4 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111432728 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.5e-105
Identity = 196/211 (92.89%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS QI+ YDLSFKVLLIGDSGVGKSSLLHTFISAS+D+LTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETFTNLLDVWA+EVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESERAVSREDGIALANKLGSLFLECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS+VVKRN+LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 211

[Close]

BLAST of Clc08G02450 vs. ExPASy TrEMBL
Match: A0A6J1CSC9 (ras-related protein RABC2a-like OS=Momordica charantia OX=3673 GN=LOC111013757 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 191/211 (90.52%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS SA   AYDLSFKVLLIGDSGVGKSSLL TF+S+SL  L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSAHTAAYDLSFKVLLIGDSGVGKSSLLLTFVSSSLLDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRE+F NL D+WA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFINLSDIWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERSTV+KRNILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSTVIKRNILRQKQEGQAQQSGGCCS 211

[Close]

BLAST of Clc08G02450 vs. ExPASy TrEMBL
Match: A0A5D3BW44 (Ras-related protein RABC2a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00280 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.4e-100
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKR+ILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Clc08G02450 vs. ExPASy TrEMBL
Match: A0A1S3CID4 (ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103501313 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.4e-100
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +N   LSFKVLLIGDS VGKSSLLHTFISASL  L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHLN---LSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFRSLTSSYYRG QGIILVYDVTRRETF NLLDVWA+EVELYLTDQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CVKMLVGNKVD+ESER VSREDGIALANKLGSLF ECSAKTRENVEKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           SFLEERS++VKR+ILRQKQEGQAQQSGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Clc08G02450 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 328.9 bits (842), Expect = 2.9e-90
Identity = 163/211 (77.25%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQERFR+LTSSYYRG QGIILVYDVTRRETFTNL+DVW  E+ELY T+Q+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           CV+MLVGNKVD+ESER VSRE+GIALA +L  +FLECSA+TR+NVE+CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKRNIL+QK E Q     GCCS
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

[Close]

BLAST of Clc08G02450 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 292.0 bits (746), Expect = 3.9e-79
Identity = 151/211 (71.56%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY T+ D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKR     K + +A Q G CCS
Sbjct: 181 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

[Close]

BLAST of Clc08G02450 vs. TAIR 10
Match: AT3G09910.2 (RAB GTPase homolog C2B )

HSP 1 Score: 292.0 bits (746), Expect = 3.9e-79
Identity = 151/211 (71.56%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY T+ D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKR     K + +A Q G CCS
Sbjct: 181 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

[Close]

BLAST of Clc08G02450 vs. TAIR 10
Match: AT3G09910.3 (RAB GTPase homolog C2B )

HSP 1 Score: 292.0 bits (746), Expect = 3.9e-79
Identity = 151/211 (71.56%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q + YDLSFK+LLIGDSGVGKSSLL +FIS+S++ L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY T+ D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSTVVKRNILRQKQEGQAQQSGGCCS 212
           S LEE S+ VKR     K + +A Q G CCS
Sbjct: 181 SLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204

[Close]

BLAST of Clc08G02450 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-75
Identity = 143/212 (67.45%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MGSPSAQINAYDLSFKVLLIGDSGVGKSSLLHTFISASLDHLTPTIGVDFKIKQLTIGGK 60
           MGS S Q   +D  FKVLLIGDSGVGKSSLL +F S + D L+PTIGVDFK+K LTIG K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWASEVELYLTDQD 120
           +LKL IWDTAGQERFR+LTSSYYRG QGII+VYDVTRR+TFTNL D+WA E++LY T+QD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLVGNKVDKESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180
           C+KMLVGNKVDKESERAVS+++GI  A + G LFLECSAKTR NVE+CFEEL +KI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SFLEERSTVVKRNILRQK-QEGQAQQSGGCCS 212
           S   E S+  K+NI +Q   +  +  S  CCS
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

The following BLAST results are available for this feature:

BLAST of Clc08G02450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884336.1	1.6e-106	94.79	ras-related protein RABC2a-like isoform X2 [Benincasa hispida]	[more]
XP_022925432.1	1.1e-104	92.89	ras-related protein RABC2a-like [Cucurbita moschata] >XP_023535218.1 ras-related...	[more]
XP_022973510.1	1.1e-104	92.89	ras-related protein RABC2a-like [Cucurbita maxima] >XP_022973511.1 ras-related p...	[more]
XP_022143972.1	5.8e-101	90.52	ras-related protein RABC2a-like [Momordica charantia]	[more]
XP_008463077.1	4.9e-100	90.52	PREDICTED: ras-related protein RABC2a-like [Cucumis melo] >KAA0034999.1 ras-rela...	[more]

BLAST of Clc08G02450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	4.1e-89	77.25	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	5.5e-78	71.56	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
O23657	1.7e-74	67.45	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
Q6DHC1	1.9e-49	54.00	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]
P36862	3.2e-49	56.18	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]

BLAST of Clc08G02450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8U9	5.5e-105	92.89	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111472047 PE=4...	[more]
A0A6J1EBP4	5.5e-105	92.89	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111432728 PE...	[more]
A0A6J1CSC9	2.8e-101	90.52	ras-related protein RABC2a-like OS=Momordica charantia OX=3673 GN=LOC111013757 P...	[more]
A0A5D3BW44	2.4e-100	90.52	Ras-related protein RABC2a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CID4	2.4e-100	90.52	ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103501313 PE=4 SV=...	[more]

BLAST of Clc08G02450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03530.1	2.9e-90	77.25	RAB GTPase homolog C2A	[more]
AT3G09910.1	3.9e-79	71.56	RAB GTPase homolog C2B	[more]
AT3G09910.2	3.9e-79	71.56	RAB GTPase homolog C2B	[more]
AT3G09910.3	3.9e-79	71.56	RAB GTPase homolog C2B	[more]
AT1G43890.1	1.2e-75	67.45	RAB GTPASE HOMOLOG B18	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 55..77 score: 51.04 coord: 154..176 score: 43.58 coord: 119..132 score: 43.97 coord: 37..53 score: 29.18 coord: 15..36 score: 50.83
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..180 e-value: 0.0056 score: -1.2
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..211 e-value: 3.8E-4 score: 10.4
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..179 e-value: 6.4E-88 score: 308.1
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..179 e-value: 1.0E-28 score: 111.4
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 1..211
None	No IPR available	PANTHER	PTHR24073:SF1138	SMALL MONOMERIC GTPASE-RELATED	coord: 1..211
None	No IPR available	PROSITE	PS51417	ARF	coord: 8..177 score: 8.573488
None	No IPR available	PROSITE	PS51419	RAB	coord: 10..211 score: 31.681597
None	No IPR available	PROSITE	PS51420	RHO	coord: 8..177 score: 9.509729
None	No IPR available	CDD	cd01863	Rab18	coord: 15..176 e-value: 1.89898E-91 score: 263.017
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 17..180 e-value: 1.9E-12 score: 39.4
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 16..177 e-value: 9.0E-54 score: 181.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 6..211 score: 16.694611
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..171 e-value: 1.5E-28 score: 97.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..210 e-value: 4.5E-63 score: 214.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G02450.1	Clc08G02450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding