Clc08G02380 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G02380
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionCell wall protein RBR3-like
LocationClcChr08: 4614808 .. 4618800 (-)
RNA-Seq ExpressionClc08G02380
SyntenyClc08G02380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAGGTAATTCTTCAGTTATCTTTCCTCATCCGAAGTGTGCCCTATTTTGTCGCTCACTCTCTTCCAAATTGTTTGCCCCTCAATCCTCTTGGAGAGTGTCTGGTTCTTCAAATGGTGAATACTCACATTGGTGTACATACATCTAGTCTGAAGATGGTACGCACTAAGCAGAAAGCTAATGAGAAACGCGATGTTAGTCTCGATGTTCTGCCTTCAAGGGTTAACATTCATGGGGTTCGCATGCGTGGTCCGTCGTCTTTTTCCTTTAAGTGGCCGAGAACTCTACCCAGACAAGTGCTAGAGTGGTTACTAAGAATCATCCGACTAATACAACAGCTAATGAGAACCTGCTACATGGCTCTAATCCTATTGAGGTAATGCCCTTTGCTATGGTTCCTTGGGTTGATCCCTGTACTCAAATATCTTCTCCTACTGTGCCTACTGTTGATAGAAATCCTTCCTTAGTTGAAGCTGTGTTTGTAAAGTCAGACAATCGTTAGTCTGAGAATGTGTCTTGATCACTGTGTTCGTAATGTTTCTGCTGATTCTATTCTTGTCTCTATGTCTACCCCCCTAATTGATGAGAATCTACCTACTGAGTTTGAAATAGCTGGTTCTACTCTTGGAGTGGTTGATAATATATACCCTGTTGTGCAACCGAATAGCTCACTTAATTCTGATGTTCCACAAAGATCTATCTCTAATGCTGGTACTAATGTTAATGTCATCATGTTCGTTGTGCACTCTCCCACTAATAAGAAGCCCTCTATTCATAATGTTGACCCTGCTACTACTGAGGAAACGACTGCTCATGTATCCTCACCCGACTTTGACAGTCCTCAGTCTACTTCCTCTTCTATTGCTTTTGAGGTTGTATCCTCTGCCTCCTTAGAGTCTATGGATGATGATGTCCCCATAGGTCAATTAAGAAATCCTTGGAGGCGGTTGTCAAGATTGCAAGCTAAAGACAATGGTCCATCTAGTCGTCCTAGCTCACATCGTTCTAGTTCCTCCAATTCTAAACACATCTCCTTGTCCAATTATGAAGATGATAATGATGTTGTCTCTACCCGACATCGTACCAAGGAAAAGCATAGAAAGATTCCTCCAAATGTCCCATCTGTTCCCATTGATGGAATTTCATTCCATAATGAAGAGAATGTTCAAAAGTGGAAATATGTTGTGCAACATCGCATCGCCGATGAAACGGTTTTGTCTAACCAGACTGTTTCATGCTTAGAAATCATAGAGTTAATTCATCATGTCGTTGTGAGAACTGTGATCAATCTGGGTCCTTTCTATCCTCAACTCATGCGTGAATTGATTGTGAACTTGCCTTCTCAGTTCAACAATCCTATCAATCCAAACTTCCAAAAATTCACATTCGGGCTACCAATTTTCATATTTCTTCGACCATTATCAATGCCTATTTAGGTCGTGATGAGTCTTCATCTCTTAAAGAACCTCATCCTTCCACTACAGATCTTGTTGTGGAGCTGACTGGTAGTACTAAGTCTTCCTGGCCCTCGTTTGGGCAATTACCTACTGTTGCCCTTAGCGTGAAATATGTTGTTCTTCACAAGATTGACATTGCTAACTGGTGCCCCTAGACTCAGGTATCTGATGTGTCTTCTACTTTGGTTAGTTTACTGTATCAGATTGGTCCTCGTTCTACCTTCCATTTTGGTGTGCTTGTGTTCAACCAGTTATTATGGTATGTGGATTCCTTTACCATCAAGCTTCCCATCTGCTGCCCCCGTTTACTGTCTGGAATTTTGATTGCTTAATGTCCCTCTATTCTCGACCCTAATGAATGACCTGGTCCTAATCCATCAGATCTTAATCTTTGCAACAAGTTGTTCTTGGGATCTCATGTGCCTGACATTGTGCACAATATTCGTCGGCTGTTGATATTCCCTTGCCCGAAAACCTTCAGGTACCTAAAGGCAAGTTACACATCCCTACTGAGCTTGGCACGCGTATCCTTCACGTACTCTCCTCTTAATCTCGTGTCCTTTGTTTGGTGATTTGTGATTTGACAGACCGCTAGGCTGAAATTGATGCTCTTGTTCATCTCCTCAGTCTGTCTATGCCTCCCTTCGATGGTGCCTCTACATCTCAGGGGCCTGCTTAATCTGATCTCAATTTTTTTTTTTTTTTATGGGCAAAAAGGGGAGTATGATTGTTTTGGTTTTGAGTTGTGGTTGGTCGGTCTGGACATTTGTGTTTTTGTGGTTCTAGTTTGGGACTGACTGGTTGTTGTTTTGTTTGGGTTTTGGTTACTGGGTTGGAACTGGTTTGGTTTGTTTACTGCTAGCTTTTTTGACTATGTATGGTTCGCCGAAAAAAGAAAATCTTCCACCAAGAGAGGAGTTTGTTATAGTGGTTTTGGCTATCAATATTTTCTTTTATCTTGATGTTTCTCTGGTTGTCTTTGACTTCTTGTGCACATAATTTATTGTGTATTATTTTGTTAGTGGGTATGGTTGTAGTTGTTTCCTTCTTGGTTTGGTCTGAATTTCTTACCTTATGTTGTTTGGATCCATTTCCAAATAGGGTGCTATATTGGTACGATTGGTGTTTTCTAGGGTAAGCCGTCAATTTCAGTTTTGAGGTGAGTGGAGGATGTTGTGGTGAAAAAGTTGAAAAAGAGAAAAACCAAAAGGTGTAGAGAATGTTTTAGAAGTTGAGGTTGTTGTGCGCATCTTAAGTCAGAAAGATCACCTTCAACACATATTGATCATCTTCTGATGTGTATACTAAGTTGAATGGTAATTCAACTTTGCAATGAACAAAGTGTGAGAGTTGGTGCACTATAGCAGTCGATTGAGGGGGAGCCTCATTGGCTAACTTGTTCGTAAGGAGCATTGGATTTAGGAGGAGCCTATATCGGCTCACTAGTAATATGCTTATATTTGTATTAGTCGTTTATTATATAAGCTAGGTTTGTTGTATAAACTCAAATTATTACTAGTGGAACTCTTTTCTTCCAGGCAAATTGCCTCTCAGACGTAGGTGTGATTACACCAAACTAGGTTAACAACTTTGTGTGTTGTCTTCTTTCTTTTTCCTCTCTCAAGTCTCTTGTTTGTATGGTTGTTATTGACGTTGTTCTCAACTTCTTATTCTTCGAGTCATCTACCTTTGGTTTCAAGACATTATATATGTAAAATAAAATTAGATTTAATAATTATTCTCATAACCGGATCGACCATCATTAACAAATTTGTTATTTGCTATTTAACTTGTAAAATAAAAAGTTTAATAGGGGTATATTTTAATACAAATGATAAGTTTCTATGTTAAAAATTTGGAACATTATAATGCTATTTTATTTGGTATTTACGTTGTTCTGTCCATTGGGGATGGCTAATTTACAAGGAAGGAAAAGAGAGGTGGAATTATTCAAAGTCTTAGCAAGGGATTCTTTTAGTCAACATGTATGTTAAAGCAATGGAGGAAATAAAAAGTGTTTGAATAATTACCCTACAGTACACTAACATATATGTTTCTTTTAAAGTGATTTCACTTTCATATAGCTTGAATCCAAAGATTCTTTGCTTTCTCAAAACTTGTCTTTCCCTTTTAATTATTTCACTATAAATAAATCATCCTCATAATCCCTCTCTTTAAACCAACACTCACAGTTCTAAATTCATTTTTCCATCTAATTTCTTCACCTACGCCATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

mRNA sequence

ATGACTAAGGTAATTCTTCAGTTATCTTTCCTCATCCGAAGTGTGCCCTATTTTGTCGCTCACTCTCTTCCAAATTGTTTGCCCCTCAATCCTCTTGGAGAGTGTCTGGTTCTTCAAATGGTGAATACTCACATTGGTGTACATACATCTAGTCTGAAGATGGTACGCACTAAGCAGAAAGCTAATGAGAAACGCGATACAAGTGCTAGAGTGGTTACTAAGAATCATCCGACTAATACAACAGCTAATGAGAACCTGCTACATGGCTCTAATCCTATTGAGACAATCGTTAGTCTGAGAATGTGTCTTGATCACTGTGTTCGTAATGTTTCTGCTGATTCTATTCTTGTCTCTATGTCTACCCCCCTAATTGATGAGAATCTACCTACTGAGTTTGAAATAGCTGGTTCTACTCTTGGAGTGGTTGATAATATATACCCTGTTGTGCAACCGAATAGCTCACTTAATTCTGATGTTCCACAAAGATCTATCTCTAATGCTGGTACTAATGTTAATGTCATCATGTTCGTTGTGCACTCTCCCACTAATAAGAAGCCCTCTATTCATAATGTTGACCCTGCTACTACTGAGGAAACGACTGCTCATGTATCCTCACCCGACTTTGACAGTCCTCAGTCTACTTCCTCTTCTATTGCTTTTGAGGTTGTATCCTCTGCCTCCTTAGAGTCTATGGATGATGATGTCCCCATAGGTCAATTAAGAAATCCTTGGAGGCGGTTGTCAAGATTGCAAGCTAAAGACAATGGTCCATCTAGTCGTCCTAGCTCACATCGTTCTAGTTCCTCCAATTCTAAACACATCTCCTTGTCCAATTATGAAGATGATAATGATGTTGTCTCTACCCGACATCGTACCAAGGAAAAGCATAGAAAGATTCCTCCAAATGTCCCATCTGTTCCCATTGATGGAATTTCATTCCATAATGAAGAGAATGTTCAAAAGTGGAAATATGTTGTGCAACATCGCATCGCCGATGAAACGGTTTTGTCTAACCAGACTGTTTCATGCTTAGAAATCATAGATTCTAAATTCATTTTTCCATCTAATTTCTTCACCTACGCCATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

Coding sequence (CDS)

ATGACTAAGGTAATTCTTCAGTTATCTTTCCTCATCCGAAGTGTGCCCTATTTTGTCGCTCACTCTCTTCCAAATTGTTTGCCCCTCAATCCTCTTGGAGAGTGTCTGGTTCTTCAAATGGTGAATACTCACATTGGTGTACATACATCTAGTCTGAAGATGGTACGCACTAAGCAGAAAGCTAATGAGAAACGCGATACAAGTGCTAGAGTGGTTACTAAGAATCATCCGACTAATACAACAGCTAATGAGAACCTGCTACATGGCTCTAATCCTATTGAGACAATCGTTAGTCTGAGAATGTGTCTTGATCACTGTGTTCGTAATGTTTCTGCTGATTCTATTCTTGTCTCTATGTCTACCCCCCTAATTGATGAGAATCTACCTACTGAGTTTGAAATAGCTGGTTCTACTCTTGGAGTGGTTGATAATATATACCCTGTTGTGCAACCGAATAGCTCACTTAATTCTGATGTTCCACAAAGATCTATCTCTAATGCTGGTACTAATGTTAATGTCATCATGTTCGTTGTGCACTCTCCCACTAATAAGAAGCCCTCTATTCATAATGTTGACCCTGCTACTACTGAGGAAACGACTGCTCATGTATCCTCACCCGACTTTGACAGTCCTCAGTCTACTTCCTCTTCTATTGCTTTTGAGGTTGTATCCTCTGCCTCCTTAGAGTCTATGGATGATGATGTCCCCATAGGTCAATTAAGAAATCCTTGGAGGCGGTTGTCAAGATTGCAAGCTAAAGACAATGGTCCATCTAGTCGTCCTAGCTCACATCGTTCTAGTTCCTCCAATTCTAAACACATCTCCTTGTCCAATTATGAAGATGATAATGATGTTGTCTCTACCCGACATCGTACCAAGGAAAAGCATAGAAAGATTCCTCCAAATGTCCCATCTGTTCCCATTGATGGAATTTCATTCCATAATGAAGAGAATGTTCAAAAGTGGAAATATGTTGTGCAACATCGCATCGCCGATGAAACGGTTTTGTCTAACCAGACTGTTTCATGCTTAGAAATCATAGATTCTAAATTCATTTTTCCATCTAATTTCTTCACCTACGCCATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

Protein sequence

MTKVILQLSFLIRSVPYFVAHSLPNCLPLNPLGECLVLQMVNTHIGVHTSSLKMVRTKQKANEKRDTSARVVTKNHPTNTTANENLLHGSNPIETIVSLRMCLDHCVRNVSADSILVSMSTPLIDENLPTEFEIAGSTLGVVDNIYPVVQPNSSLNSDVPQRSISNAGTNVNVIMFVVHSPTNKKPSIHNVDPATTEETTAHVSSPDFDSPQSTSSSIAFEVVSSASLESMDDDVPIGQLRNPWRRLSRLQAKDNGPSSRPSSHRSSSSNSKHISLSNYEDDNDVVSTRHRTKEKHRKIPPNVPSVPIDGISFHNEENVQKWKYVVQHRIADETVLSNQTVSCLEIIDSKFIFPSNFFTYAMGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM
Homology
[Close]
BLAST of Clc08G02380 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-40
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of Clc08G02380 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-40
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNRQKK+HSSFSIFS FKSRRGRKGD+C+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           EPGIDRKAKDYIDRIYRNRVFESERQT+T+  NGTK N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]
BLAST of Clc08G02380 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-40
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 0 

Query: 364 GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 423
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 424 GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Clc08G02380 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-38
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNR KKAHSSFSIF+ FKSRR RK DHCDHS  W +E+PRSSK+WPSDEDK H WVA
Sbjct: 1   MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGW-DEIPRSSKIWPSDEDKIHRWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTK 458
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+P++GTK
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTK 95

[Close]
BLAST of Clc08G02380 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 6.9e-38
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNR KKAHSSFSIF+ FKS++ RK DHCDHS  W +EMPRS KVWPSDEDK H WVA
Sbjct: 1   MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMPRSGKVWPSDEDKTHRWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPN 460
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+P+NG K N
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

[Close]
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.4e-41
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-40
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGGNNRQKK+HSSFSIFS FKSRRGRKGD+C+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           EPGIDRKAKDYIDRIYRNRVFESERQT+T+  NGTK N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-40
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 0 

Query: 364 GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 423
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 424 GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-39
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 0 

Query: 364 GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 423
           G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 424 GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-32
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 421
           MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 422 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 461
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+  NG   N+
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]
BLAST of Clc08G02380 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-12
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 362 MGGNNRQKKAHSS--FSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHW 421
           MGG NR   +HSS  FS+FS FK+RR  +    +   SW ++   + K   SDEDK  +W
Sbjct: 1   MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 422 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 451
           VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61  VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]
BLAST of Clc08G02380 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-08
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 387 RKGDH--CDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFES 446
           R+  H   +   SW +++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ES
Sbjct: 4   RRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSES 63

Query: 447 ERQTV 450
           ERQT+
Sbjct: 64  ERQTL 66

The following BLAST results are available for this feature:
BLAST of Clc08G02380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45869.11.9e-4084.85hypothetical protein Csa_005516 [Cucumis sativus][more]
KAA0035003.13.3e-4083.84hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... [more]
KGN45870.15.6e-4082.47hypothetical protein Csa_004960 [Cucumis sativus][more]
KAG6592308.15.3e-3883.33hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592306.16.9e-3881.63hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc08G02380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G02380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAK69.4e-4184.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1[more]
A0A5A7SWT91.6e-4083.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K7Y22.7e-4082.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0KBW11.4e-3983.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0K8W02.7e-3271.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1[more]
BLAST of Clc08G02380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05858.19.0e-1248.35unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.14.6e-0847.69unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..308
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 362..450
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 362..450

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G02380.2Clc08G02380.2mRNA