Clc08G02280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G02280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	ClcChr08: 4332401 .. 4332841 (-)
RNA-Seq Expression	Clc08G02280
Synteny	Clc08G02280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCCTTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCGCAACGGCAGTGTGGCCACCGACGATCAACCATTGCAATTTGTGGAACTCCGATTAGGGCATTACAGCCAATTGGTGGCTACACCTTCCCATCAAATCCTCCAACAAACTTCCCCAACACTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGGGAGCTTCAACACCCACCATTCCTCTCCCACTACTTCCTCCTCCGCTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCTTGCGACGCCATCTTCCACAAAATCGCCTCCTTCGCCCTTCGATTGGCCGCCGGCAACCTCAATCTCAACTTTCACATCACCGCCGCTGTTGATTTTGTGTACACGCACTGGGTGGATCTGGACCCAACAGAAGATGCGCCACCGGTGTCGGCGATATAG

mRNA sequence

ATGTCTTCCCTTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCGCAACGGCAGTGTGGCCACCGACGATCAACCATTGCAATTTGTGGAACTCCGATTAGGGCATTACAGCCAATTGGTGGCTACACCTTCCCATCAAATCCTCCAACAAACTTCCCCAACACTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGGGAGCTTCAACACCCACCATTCCTCTCCCACTACTTCCTCCTCCGCTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCTTGCGACGCCATCTTCCACAAAATCGCCTCCTTCGCCCTTCGATTGGCCGCCGGCAACCTCAATCTCAACTTTCACATCACCGCCGCTGTTGATTTTGTGTACACGCACTGGGTGGATCTGGACCCAACAGAAGATGCGCCACCGGTGTCGGCGATATAG

Coding sequence (CDS)

ATGTCTTCCCTTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCGCAACGGCAGTGTGGCCACCGACGATCAACCATTGCAATTTGTGGAACTCCGATTAGGGCATTACAGCCAATTGGTGGCTACACCTTCCCATCAAATCCTCCAACAAACTTCCCCAACACTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGGGAGCTTCAACACCCACCATTCCTCTCCCACTACTTCCTCCTCCGCTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCTTGCGACGCCATCTTCCACAAAATCGCCTCCTTCGCCCTTCGATTGGCCGCCGGCAACCTCAATCTCAACTTTCACATCACCGCCGCTGTTGATTTTGTGTACACGCACTGGGTGGATCTGGACCCAACAGAAGATGCGCCACCGGTGTCGGCGATATAG

Protein sequence

MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPVSAI

Homology

[Close]

BLAST of Clc08G02280 vs. NCBI nr
Match: XP_011650219.1 (RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_022479 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-49
Identity = 105/143 (73.43%), Postives = 115/143 (80.42%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISD 60
           MSS TT S R  IR N NGS AT+ QPLQFVELRLGH+SQLV +PSHQILQQTSP LISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHI 120
            L  FPLREL+ PPF+SH  L RFLSS+N+S A CDAIF KI+SFA +L AGNLN NFHI
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 121 TAAVDFVYTHWVDLDPTEDAPPV 144
            AA+DFVYTHWVDLDP EDA  V
Sbjct: 121 IAALDFVYTHWVDLDPAEDAAAV 143

[Close]

BLAST of Clc08G02280 vs. NCBI nr
Match: XP_031740500.1 (E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 5.6e-42
Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISD 60
           MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA---LRLAAGNLNLN 120
            L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+ I+SFA   L  A  N+N+N
Sbjct: 61  TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120

Query: 121 FHITAAVDFVYTHWVDLDPTEDAPPV 144
           FHI A VD VYTHWVDLDP EDAP V
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAV 146

[Close]

BLAST of Clc08G02280 vs. NCBI nr
Match: KAE8649756.1 (hypothetical protein Csa_012785 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 5.6e-42
Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISD 60
           MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA---LRLAAGNLNLN 120
            L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+ I+SFA   L  A  N+N+N
Sbjct: 61  TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120

Query: 121 FHITAAVDFVYTHWVDLDPTEDAPPV 144
           FHI A VD VYTHWVDLDP EDAP V
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAV 146

[Close]

BLAST of Clc08G02280 vs. NCBI nr
Match: KAG6603277.1 (E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG6603283.1 E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 9.5e-34
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLI 60
           MS+  TLSL+YCI ++ RN + VATD QP+Q+ ELRL + +Q V+  S+Q+LQQT  TLI
Sbjct: 1   MSNPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 60

Query: 61  SDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNF 120
           SDAL P  LR+LQHPPFLSH+ +L+FLS+FN+S A+  AIF  IA+FAL LAAG+L+ NF
Sbjct: 61  SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 120

Query: 121 HITAAVDFVYTHWVDLD 136
           HI   +DFV T WVDLD
Sbjct: 121 HIIVYLDFVQTIWVDLD 137

[Close]

BLAST of Clc08G02280 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 7   LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFP 66
           LS +  I+S  NG+VA+D QP+Q +ELRLG+ + L++  S QILQQT  T + DALFPF 
Sbjct: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68

Query: 67  LRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHITAAVDF 126
           LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFAL+LAAGN++LNFHI   VD 
Sbjct: 69  LRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDV 128

Query: 127 VYTHWVDLDP 137
           +   WVDLDP
Sbjct: 129 IEMIWVDLDP 138

[Close]

BLAST of Clc08G02280 vs. ExPASy TrEMBL
Match: A0A0A0LRB0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49
Identity = 105/143 (73.43%), Postives = 115/143 (80.42%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISD 60
           MSS TT S R  IR N NGS AT+ QPLQFVELRLGH+SQLV +PSHQILQQTSP LISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHI 120
            L  FPLREL+ PPF+SH  L RFLSS+N+S A CDAIF KI+SFA +L AGNLN NFHI
Sbjct: 61  TLIRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHI 120

Query: 121 TAAVDFVYTHWVDLDPTEDAPPV 144
            AA+DFVYTHWVDLDP EDA  V
Sbjct: 121 IAALDFVYTHWVDLDPAEDAAAV 143

[Close]

BLAST of Clc08G02280 vs. ExPASy TrEMBL
Match: A0A0A0L3Z2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.7e-42
Identity = 95/146 (65.07%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISD 60
           MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA---LRLAAGNLNLN 120
            L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+ I+SFA   L  A  N+N+N
Sbjct: 61  TLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVN 120

Query: 121 FHITAAVDFVYTHWVDLDPTEDAPPV 144
           FHI A VD VYTHWVDLDP EDAP V
Sbjct: 121 FHIIADVDIVYTHWVDLDPAEDAPAV 146

[Close]

BLAST of Clc08G02280 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.8e-34
Identity = 76/130 (58.46%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 7   LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFP 66
           LS +  I+S  NG+VA+D QP+Q +ELRLG+ + L++  S QILQQT  T + DALFPF 
Sbjct: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68

Query: 67  LRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHITAAVDF 126
           LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFAL+LAAGN++LNFHI   VD 
Sbjct: 69  LRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDV 128

Query: 127 VYTHWVDLDP 137
           +   WVDLDP
Sbjct: 129 IEMIWVDLDP 138

[Close]

BLAST of Clc08G02280 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 77/130 (59.23%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 7   LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFP 66
           LS +  I+S  NG+VA+  QP+Q +ELRLGH + L++  S QILQQT  T I DALFPF 
Sbjct: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68

Query: 67  LRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNFHITAAVDF 126
           LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFAL+LAAGN++LNFHI   VD 
Sbjct: 69  LRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDV 128

Query: 127 VYTHWVDLDP 137
               WVDLDP
Sbjct: 129 NEMIWVDLDP 138

[Close]

BLAST of Clc08G02280 vs. ExPASy TrEMBL
Match: A0A6J1ES83 (uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC111435504 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.3e-33
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLI 60
           MS   TLSL+YCI ++ RN + VATD QP+Q+ ELRL + +Q V+  S+Q+LQQT  TLI
Sbjct: 66  MSDPNTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLI 125

Query: 61  SDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLAAGNLNLNF 120
           SDAL P  LR+LQHPPFLSH+ +L+FLS+FN+S A+  AIF  IA+FAL LAAG+L+ NF
Sbjct: 126 SDALLPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNF 185

Query: 121 HITAAVDFVYTHWVDLD--------PTEDAPPVSAI 147
           HI   +D V T WVDLD        P ++  P S +
Sbjct: 186 HIIVYLDLVQTIWVDLDLDLDLEMPPKQEPAPASVM 221

The following BLAST results are available for this feature:

BLAST of Clc08G02280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650219.1	4.7e-49	73.43	RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein ...	[more]
XP_031740500.1	5.6e-42	65.07	E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus]	[more]
KAE8649756.1	5.6e-42	65.07	hypothetical protein Csa_012785 [Cucumis sativus]	[more]
KAG6603277.1	9.5e-34	60.58	E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947933.1	1.6e-33	58.46	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]

BLAST of Clc08G02280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G02280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0	2.3e-49	73.43	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 P...	[more]
A0A0A0L3Z2	2.7e-42	65.07	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 P...	[more]
A0A6J1G7Z5	7.8e-34	58.46	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KYV1	1.3e-33	59.23	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1ES83	2.3e-33	54.49	uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]

BLAST of Clc08G02280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G02280.1	Clc08G02280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity