Clc08G01320 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAGAGGAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAATGAAATAATAATAATAATAATAATAAGAGAAAAAAGTTGCAGAAAAATTCAGTTTCTTCCTTGTAACTCTTATCTGAGCTCGCTGGCTCCATTGATGAGCTGATCGGCTTTCACACAATTCTTCTCTTCTGTTTTGTTTATAATGCGCGCCCTTCTGACCTTGAGGCCGCCATCTTCAAACCCACCGCTTCCATGTCTTCCTTCAATCCATTTCTCTCCCCCTCTTTCCTCCTCTTTCCTCTTCAGCTTCAGACCCAACAAGCGCTTCCACTTTCTCAAGCCCTGTTCCTCTCTCAAGCAATCCAAGAAACCCACTCTTCAGAACACACCCACTAACGCTCCTCAGAGCTTCAAGTGGCTTTTTAGCCCCAAGTCCAACGACGATGACGACGCCGATAAAGGGAATAATGGCGTTATGGAAGAGGGCACTGCGGTTAAGGGTACCCTTTTGGCTGGTGTCTTGCTTGTTGGGGTTATCGGTGGATTTGCATTTGCTGGCTATGTTTACAGGGACCCGATTAACGCCTTCTTGAATCACTTCTCCACATTTATTGATGGTAATTTTGTTATGGTCTATGGCTTTTTGCTTGTATTTCTTTTGAATTGGGGAATTTATTTCTTGGTGGAGTGATCGATGAGCATTTTGTTTTTGTTGGGGGTGTGTTGTTCATTGCTGGTTGAAATTGGTCTCGATTATGCGTTGGTTATTGTAATGGGAGGTTGTTCGGAAATTCCTTATCCTGATTCTGTTTGTGTGTTTGGCAATCATATTTTGTTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCTTTATATTCTAATGCAACTTTAACCTCAATTTCTGTGGAAATGTGAGTTTTATAGGTTCCCCTTTATTTCCAAAAATTTAGTTCTATAATGCATGGAGTTAATTGAACTGCCTCCTGCAGTTCAAAAAACGGGAACAGCTGAAAGTCGTTTATAGATTTATATCCTACTTTTTTCTTGTACTTCCATTGTTATTCTATTTTGGTATTAACTTTCAAACCTTCTGTTTTAGTCTTAGGGAGTAGAGCTCCATTTTAGGTTTAAATTGCTGTCCCTCTAAGTTGGACTTCTGGGTTGCTTTGGTTGGGTGTGAAGTGAGTCAGTTCCCCTCTACTTATTTAGGTCTTTATTTGGGAGGGAATCCAAGGATTCAGTTGTTTTGGAATCCTGCTCTGGAAAAGTTTTAGAAATGGTATTCTTCTTGCAAAAAGACTTACTTTTCTAAAGGAGGGAGACTCTTTTTCAGGCGGTTTTGACAGGGCTCCTAGTTATTTGGATTTTGGATTCAGTCTATAAGAATCTGAGAGATTGTAAGAAACTTTTTGTGGGAAGGGGTTGATGAGGGAGGTGGATCTTAAGCCTTTCGACTTGGGGGGTTTGGGTATTAGGAGTATAAGATTACGTAGTAAGCTTCTTTTGGCCAAATGGTTGTGGCGGTTCTTCACTGAAGTCTGAGACTGAAGCACTACGGTATAGAGAGATTGTGAGTAGGGTATTAAATGTCGTAAGCGATATTCTCCAAAACATCTTGGGTTACAACTTATTCCTGACAACTGAGGTGTCTCACAGTTAAGCTTGGGTCTGTTTAAACATGATGGATTGACTAATCAGTTATGTGTCATCACATATCTGCATCTGCTGCTATCTGCTTTCTAATTCTAGTTCCCAAAATCTAATGATTGTGTTATTCAGGTTAAAGTGGGTTCGGTATATGATAATTGTATCTTCTTTCATGCAGCTACTATTTTTTCTTTGTTTTTAAACATAAAATCATTACCAAAGAAAAAGGGACACGTTGAAGAGCTGAAGAGCTCTCCATTACTCTTAAGGATCTCTCTCAATCATACAATTCTTATCATAGAGCTTTTGATGAACAGGATATGGTCCAGCAGGATATGCTTTATTCGTAGCAGTATATGCAGGATTGGAGGTACACATATTTTTTATCTAATACAAATATGTACAAATTTGCCTTCCACATCTATAGAGGTGCCCTTCGTGGTAAGGCTTGGCATATTTAGGGTGGCCCAGTTGGAGAACTTAATAGTTTAAAATCTTTGTAGTTTTTTGTCTACTTTGCCCCCTTGGGATCAAATGGAGCTGGGGCTATGAACATAATGCAAGAAGCGGATGTGATACTTTTGTAGTAGACTAAAAGTACTATGCTTGCCTAGGTCTATAACATATATGCTGAAACTATGAAGATTGTTTTCCTGTGCTAGTTGTTATACCACTTTTTGGTTGCCCATGTGGAGGTTCGAGAGATACTTCCATGGTTTATGTTTTTACTTTTTTCAACTATTCATTGTAAAATTTATGGTATGATTTCTTCCCTTCTAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTACTCTTTGGTTCTGTAATTGGGACGGTTATAGTTTCCATCAGTGGAACGGTGAGTGTTTTGTTCAAGTATAACAAACAGATAGATTAACATATGGCCACTAATTATTAACTTATTATCTCATATCATTTCAGGTTGCTGCTAGTGTTGCCTTTTTGATTGCTCGGTATTTTGCTCGTGAGCGTATTCTTAAGCTAGTAGAAGGAAACAAGAAATTTGCTGCCATTGACAAAGCCATTGGAGAAAATGGTTTCAAAGTTGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTTGGAAATTATTTATATGGACTCACATCTGTCAAATTTGTCCCCTATGTGTTGGGAAGGTCAGTTTTCAATTCCTCAATGAATGTCAAAAACTGTACCTCTGTCCTGTTTCATTACTATAGTGATGTTTATATTCATAAATGATTGTCGCTTTCCTTTTCTTCAATATAATTTTTTGATTCTCCTCAGTCAGTTGTGTCGATACATACAGAATGCTTTGAGCTGTATGAACTTCAAAAGTTGTTGAAAACGTAAACAGATTTATTATCTTCAATGCAGCTGGCTGGGGATGCTTCCAGGAACATGGGCTTATGTGAGTGCGGGTGCCTTTGGACGTGCAATTATTGTAAGTTTTCAACCTGTTGCCCTCGCTGCTTAGAGAATCAGAGATGTGATTATATTTTTCATTATAACATCTTACCTTGTAAATGTGTATTTGACACTGCTCTTAAATTGTTTAGGCGTGTGCTTTTTTTAATGAGTACTTCTTTAATTAAAATTTCAATTAGTAAAAGGTGCTTTTGACCAATTAAAACTGCTTTTAAAATTTTTCGATGAGTACAAGTAGTTAGAGAAATTATAAAAATAGATAAAATGCACTTGGGGTGTGTTTGTGATTGACTTTGCCTGGGTTTAAAGTGATTTGGTGGAACTTTTAACCGATTTTAGTGTTTGATAAAATTGATTATAAGATAATTTAAAACAAATCACTTTTTCATTTCAATTGGTTTCTAAAATCTACTCTTTGAGATTGAGTTCCAAAAATCTCATTCCTCTTCTAACTAACTATTAACATTTCTATTTTATTCCTATTCTATAATACTTTCTCACATTCGAGTTTGAACTTTACCAAACATTTATCTACTTCATTTTATAGCTTTTTTTTAAGTGTGGCTATAGGAATTATTTTAAAAGCTATAGCTATCCCAAACTAAGTCTTAAAGTGCTCTCTTGAGAAAGCATTTACAATTTTTAAGAGGGGAGATAAACACAAGATTGCATCATTTTATGCAAACTGTGTTTGGTTTTTCCTTTAAAATAATCTATGATCTGGATTATTAGTTGGGTTTTGCTGACCAATTGTTTACGAGTTTTCGAGTTTCCGAATTTAAATCATATCTTCTTTTTCTGCTGTTAATTTTACTTGGGATATTTCAGCAAGAAGAGTCTGAAGTTGGTTTGCTAGGAGGGGGAAATGGTCAGCTATGGACTTTAGGACTGGGATTGTTGGCAACAGCATTGGCTGCTGCATACGTTACAAGATTAGCCAAGGTAACATTTCTTATTGCTATACCACAGACTTTATCCAATCACATCTTTGTTCAGAACCTAGATCTAGCCAATATGGAATGA AAGAAGAGGAAGAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAATGAAATAATAATAATAATAATAATAAGAGAAAAAAGTTGCAGAAAAATTCAGTTTCTTCCTTGTAACTCTTATCTGAGCTCGCTGGCTCCATTGATGAGCTGATCGGCTTTCACACAATTCTTCTCTTCTGTTTTGTTTATAATGCGCGCCCTTCTGACCTTGAGGCCGCCATCTTCAAACCCACCGCTTCCATGTCTTCCTTCAATCCATTTCTCTCCCCCTCTTTCCTCCTCTTTCCTCTTCAGCTTCAGACCCAACAAGCGCTTCCACTTTCTCAAGCCCTGTTCCTCTCTCAAGCAATCCAAGAAACCCACTCTTCAGAACACACCCACTAACGCTCCTCAGAGCTTCAAGTGGCTTTTTAGCCCCAAGTCCAACGACGATGACGACGCCGATAAAGGGAATAATGGCGTTATGGAAGAGGGCACTGCGGTTAAGGGTACCCTTTTGGCTGGTGTCTTGCTTGTTGGGGTTATCGGTGGATTTGCATTTGCTGGCTATGTTTACAGGGACCCGATTAACGCCTTCTTGAATCACTTCTCCACATTTATTGATGGATATGGTCCAGCAGGATATGCTTTATTCGTAGCAGTATATGCAGGATTGGAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTACTCTTTGGTTCTGTAATTGGGACGGTTATAGTTTCCATCAGTGGAACGGTTGCTGCTAGTGTTGCCTTTTTGATTGCTCGGTATTTTGCTCGTGAGCGTATTCTTAAGCTAGTAGAAGGAAACAAGAAATTTGCTGCCATTGACAAAGCCATTGGAGAAAATGGTTTCAAAGTTGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTTGGAAATTATTTATATGGACTCACATCTGTCAAATTTGTCCCCTATGTGTTGGGAAGCTGGCTGGGGATGCTTCCAGGAACATGGGCTTATGTGAGTGCGGGTGCCTTTGGACGTGCAATTATTCAAGAAGAGTCTGAAGTTGGTTTGCTAGGAGGGGGAAATGGTCAGCTATGGACTTTAGGACTGGGATTGTTGGCAACAGCATTGGCTGCTGCATACGTTACAAGATTAGCCAAGGTAACATTTCTTATTGCTATACCACAGACTTTATCCAATCACATCTTTGTTCAGAACCTAGATCTAGCCAATATGGAATGA ATGCGCGCCCTTCTGACCTTGAGGCCGCCATCTTCAAACCCACCGCTTCCATGTCTTCCTTCAATCCATTTCTCTCCCCCTCTTTCCTCCTCTTTCCTCTTCAGCTTCAGACCCAACAAGCGCTTCCACTTTCTCAAGCCCTGTTCCTCTCTCAAGCAATCCAAGAAACCCACTCTTCAGAACACACCCACTAACGCTCCTCAGAGCTTCAAGTGGCTTTTTAGCCCCAAGTCCAACGACGATGACGACGCCGATAAAGGGAATAATGGCGTTATGGAAGAGGGCACTGCGGTTAAGGGTACCCTTTTGGCTGGTGTCTTGCTTGTTGGGGTTATCGGTGGATTTGCATTTGCTGGCTATGTTTACAGGGACCCGATTAACGCCTTCTTGAATCACTTCTCCACATTTATTGATGGATATGGTCCAGCAGGATATGCTTTATTCGTAGCAGTATATGCAGGATTGGAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTACTCTTTGGTTCTGTAATTGGGACGGTTATAGTTTCCATCAGTGGAACGGTTGCTGCTAGTGTTGCCTTTTTGATTGCTCGGTATTTTGCTCGTGAGCGTATTCTTAAGCTAGTAGAAGGAAACAAGAAATTTGCTGCCATTGACAAAGCCATTGGAGAAAATGGTTTCAAAGTTGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTTGGAAATTATTTATATGGACTCACATCTGTCAAATTTGTCCCCTATGTGTTGGGAAGCTGGCTGGGGATGCTTCCAGGAACATGGGCTTATGTGAGTGCGGGTGCCTTTGGACGTGCAATTATTCAAGAAGAGTCTGAAGTTGGTTTGCTAGGAGGGGGAAATGGTCAGCTATGGACTTTAGGACTGGGATTGTTGGCAACAGCATTGGCTGCTGCATACGTTACAAGATTAGCCAAGGTAACATTTCTTATTGCTATACCACAGACTTTATCCAATCACATCTTTGTTCAGAACCTAGATCTAGCCAATATGGAATGA MRALLTLRPPSSNPPLPCLPSIHFSPPLSSSFLFSFRPNKRFHFLKPCSSLKQSKKPTLQNTPTNAPQSFKWLFSPKSNDDDDADKGNNGVMEEGTAVKGTLLAGVLLVGVIGGFAFAGYVYRDPINAFLNHFSTFIDGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVIGTVIVSISGTVAASVAFLIARYFARERILKLVEGNKKFAAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESEVGLLGGGNGQLWTLGLGLLATALAAAYVTRLAKVTFLIAIPQTLSNHIFVQNLDLANME Homology
BLAST of Clc08G01320 vs. NCBI nr
Match: XP_038890133.1 (TVP38/TMEM64 family membrane protein slr0305 [Benincasa hispida]) HSP 1 Score: 583.6 bits (1503), Expect = 1.2e-162 Identity = 310/328 (94.51%), Postives = 314/328 (95.73%), Query Frame = 0
BLAST of Clc08G01320 vs. NCBI nr
Match: XP_008459587.1 (PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Cucumis melo] >KAA0039288.1 TVP38/TMEM64 family membrane protein [Cucumis melo var. makuwa] >TYK00473.1 TVP38/TMEM64 family membrane protein [Cucumis melo var. makuwa]) HSP 1 Score: 576.6 bits (1485), Expect = 1.4e-160 Identity = 306/328 (93.29%), Postives = 313/328 (95.43%), Query Frame = 0
BLAST of Clc08G01320 vs. NCBI nr
Match: XP_022973469.1 (uncharacterized protein LOC111472021 isoform X1 [Cucurbita maxima]) HSP 1 Score: 573.9 bits (1478), Expect = 9.2e-160 Identity = 305/347 (87.90%), Postives = 318/347 (91.64%), Query Frame = 0
BLAST of Clc08G01320 vs. NCBI nr
Match: XP_022973470.1 (uncharacterized protein LOC111472021 isoform X2 [Cucurbita maxima] >XP_022973472.1 uncharacterized protein LOC111472021 isoform X2 [Cucurbita maxima]) HSP 1 Score: 569.7 bits (1467), Expect = 1.7e-158 Identity = 301/330 (91.21%), Postives = 310/330 (93.94%), Query Frame = 0
BLAST of Clc08G01320 vs. NCBI nr
Match: XP_023535509.1 (uncharacterized protein LOC111796928 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 568.9 bits (1465), Expect = 2.9e-158 Identity = 301/330 (91.21%), Postives = 310/330 (93.94%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy Swiss-Prot
Match: Q55909 (TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0305 PE=3 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 1.0e-28 Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy Swiss-Prot
Match: P76219 (TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli (strain K12) OX=83333 GN=ydjX PE=3 SV=2) HSP 1 Score: 104.4 bits (259), Expect = 2.7e-21 Identity = 57/144 (39.58%), Postives = 88/144 (61.11%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy Swiss-Prot
Match: P9WFS2 (TVP38/TMEM64 family membrane protein MT1538 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1538 PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 8.1e-10 Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy Swiss-Prot
Match: P9WFS3 (TVP38/TMEM64 family membrane protein Rv1491c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1491c PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 8.1e-10 Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy Swiss-Prot
Match: P67118 (TVP38/TMEM64 family membrane protein Mb1528c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB1528C PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 8.1e-10 Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy TrEMBL
Match: A0A5A7T8S8 (TVP38/TMEM64 family membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00810 PE=4 SV=1) HSP 1 Score: 576.6 bits (1485), Expect = 6.8e-161 Identity = 306/328 (93.29%), Postives = 313/328 (95.43%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy TrEMBL
Match: A0A1S3CB16 (TVP38/TMEM64 family membrane protein slr0305 OS=Cucumis melo OX=3656 GN=LOC103498671 PE=4 SV=1) HSP 1 Score: 576.6 bits (1485), Expect = 6.8e-161 Identity = 306/328 (93.29%), Postives = 313/328 (95.43%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy TrEMBL
Match: A0A6J1IEN7 (uncharacterized protein LOC111472021 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472021 PE=4 SV=1) HSP 1 Score: 573.9 bits (1478), Expect = 4.4e-160 Identity = 305/347 (87.90%), Postives = 318/347 (91.64%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy TrEMBL
Match: A0A6J1I7M0 (uncharacterized protein LOC111472021 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472021 PE=4 SV=1) HSP 1 Score: 569.7 bits (1467), Expect = 8.4e-159 Identity = 301/330 (91.21%), Postives = 310/330 (93.94%), Query Frame = 0
BLAST of Clc08G01320 vs. ExPASy TrEMBL
Match: A0A0A0KST0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649300 PE=4 SV=1) HSP 1 Score: 564.7 bits (1454), Expect = 2.7e-157 Identity = 302/328 (92.07%), Postives = 310/328 (94.51%), Query Frame = 0
BLAST of Clc08G01320 vs. TAIR 10
Match: AT1G22850.1 (SNARE associated Golgi protein family ) HSP 1 Score: 422.2 bits (1084), Expect = 4.2e-118 Identity = 243/334 (72.75%), Postives = 269/334 (80.54%), Query Frame = 0
BLAST of Clc08G01320 vs. TAIR 10
Match: AT1G03260.1 (SNARE associated Golgi protein family ) HSP 1 Score: 104.0 bits (258), Expect = 2.5e-22 Identity = 64/173 (36.99%), Postives = 96/173 (55.49%), Query Frame = 0
BLAST of Clc08G01320 vs. TAIR 10
Match: AT5G19070.1 (SNARE associated Golgi protein family ) HSP 1 Score: 102.8 bits (255), Expect = 5.6e-22 Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 0
BLAST of Clc08G01320 vs. TAIR 10
Match: AT4G22850.1 (SNARE associated Golgi protein family ) HSP 1 Score: 61.2 bits (147), Expect = 1.9e-09 Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 0
BLAST of Clc08G01320 vs. TAIR 10
Match: AT4G22850.2 (SNARE associated Golgi protein family ) HSP 1 Score: 60.1 bits (144), Expect = 4.1e-09 Identity = 60/208 (28.85%), Postives = 97/208 (46.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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