Clc08G01090 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G01090
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box/LRR-repeat protein
LocationClcChr08: 1759548 .. 1766745 (-)
RNA-Seq ExpressionClc08G01090
SyntenyClc08G01090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGGGAATCCGTGACCGTGCTATGAGACAGTTGTTGTCACTTCCGCATCTTAGACTAGGACATAGAGTATTGAATGTTTAGGGTAGCAGCATTCGGTTCATTTATTTGACCATTGGTTTATTTTTCTTTCATGTTCGATTTTGTTTCTTGAGATTTTGACCAAACTATTTAAGGGGTACCCCGCTAAAGCATTTAATTCCTCTATATTTGATTTAATAAAATATCTGAATTTAAGTTGTTTAACATTTTTGGCAGAGTTTAATTAAATCATTTAATGCTGAGTCTCTAAGTTCCAAAGTATTTACGAAACGGTCATGCATAGTGTAGCGTCTTGTTAGTGGGAAAGTCGGGTCGTTACACTATCGCGGTCTATCATAAATATACAATAAAATTTTGCTATATTTGTAAATATTTTGATTCATTTTCCCACAAAATTTATGGGATATTTGCAATAAATAACAAAATAAGGAGAAATTTTGAAAAAGATAGCACATCTTTAAAATATTTGCAAATATGACAAATGTTGACTTGTCAACTTTTTTATTTTTATGATTTCCAATTTTGCCCTCCCTTGTTTTGCACAACTTTTCTTCTTCCTTTTTCTTCCTCCTTTCTTTTTCAAGCTTTTGCTTACATATCCCAATTCTTCTTATATTTTCATCCCTTTTTTTTTTCTTTTCTTTTTCCAGTTTTTCTTCCATCTCCCCAATCTCCTCATATTTTCTTCTTTTTTTTTTCCCTTTTTTTTTCCAGTTTTTGCTTCATCTTTCCATTTCCTACTAGAAAGATTAAAAAAAGAATTTACAAGGCTGAGTTTCAAACCTAGGATTTAAAAGCACACAATTCATAAGTGTCTTAGCACCAACAAGGCATTAAGGTCGATAATTTATAATGAAATGTTAAATATAAATAGCAAATGAAAATGAATTTGAAAGAAACTAATTTTTTTAGACCTTAAATTTGCACCATTTTTAGAAACATTTCTTAAAAGTTAGAAATAAGAAACAAGAATAGTTATTAAACAAGTTTATTTCTCAAAAGTGAGAAATGAGAACGTTATCAAACGGTTCAATAGTTTTTTTTTCTTTTTGTAGGATCTTAAAAGTATGAAATCTATCCGTAATAAACTTTTATCACTGATAGCTTATGATATCACTAATAGGCCAACTCTATTATAGTCTATCAATGATAGAATTCTATCACTAACAAACTACTTCAAACAACAATAGAAGTCTATGACTTATAGACTTTTATCAACTAATGTATACTAAATTATTAATAAATACTCAAGATAAAACTAAAAATCTAAAACTTATAGAATCTATTAGTAGCTATTAATGATAGACTTCATTATTATGACATAATAATGTAAATCTATCAGTGATAACCACTAATATACTTATAACTTAGTCACTCAAAGAATTCTATCACTAATTGAAGAATTCACTAGCTATCAGTCATGTTTTCAAATGTTAAAAAACAATTAACTAAATATTTGTGTATTATTAATATAAATTATTAGTGATATTAGTGATAGTACTTAGATAGATATCAGTCATATTTATATATAATGATATTGAACTTAGGTAGATATTAGTGATAGAAGTCTATTAGTAATAAAAGTCTATTATTGATAATCATGATAAAAGTTTCTCAATAATAGTCACTGATAGTTTTGAGTGTTAATTTCTCAAAATTGATAGTTACTAATGAAAGTCTATCAGTGATAATTACTAATATCTTCTATCATTGATAGCTTAATCTTTGATGGTTTTCTTCTACAGTTAATAGCCACTTACAGAAGTCTATCATTGATAGCCAACTTAGGGAATTTAATTAATAAAGTTGAATCTTGTACTAAAGTGTAAGTGGGATGCGTAGAAGTTATCACTAATAACATGTTATCAGTGAGAGAGGCTACCAACGAAATATAACATGTTATTTTATGGTAGAAAGGAATAACAAAAAGTATCTCTAATAACATGTTATCAATGATAGAAGTTATCATTAGTAATCACGATATAAGTGATATCAGTGATAGAACTTAGGTGATATATCGATGATATCAATGATATAAAAGTGGATTCTATTTTATGAAGATCTATTATTGATAGCTACTACAAATAGCTATTGGTGATAACCACTGATCAAAGCTATTAGTGATAGCCACTAATAGAAGCTATCAGTGATATGACATGAGTATATATCAATTAAATGAGTGATACTAATAATATTGATGATATGATCAACTTAAGTAATAACAGTGATAAACACTTATAAACCTCTCATTAATAGACTTCTATCACTTATATTTTTAAATCTTTAAAAGTTGATTGTTTCTTTTCAAAGTTGATAACTACTTATAAAAGTCTATCATTGATAACCACTGATAACCTGAAGTGTTAATATTGCAAGTTTGATTCCAATTGATGAAAGTGTATCAATAATAGCAAGTAATAACTTATAGCAAATTGAAAGTTAAAATTTCAAGTGTTACTAAGTCAAGGTTGTATTAATATTTCTCAAATTGAAAACTATCACTGACAGCAGCTATAAGTGATAGCAACTGATAGTAGCTATCAATGGCTATCACTTATAGTTGTTATCAATTATAACTTTTAATTTGCGAAAATGGGAAGAAGAAGCGCAGAATGGTAGGTTGAACGTGGGCTTTTTAATCATTTACCAATATGACTATCACTTCTATCAGTGATATCTAATGCTAATTTTGTGCTATATCCCTAATATATTTTTTCTTGTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTATTTTTGGCATGGTTGTTATTAGTGCAACTGATGTTCACCTAAAATAAAAGGAATGTATAATATTTTACTATTTTTCCTCTAGGGATTTTGCAAGACATTATTTTAGTTAATAACAACATATTTGAATATCAAATAAACAATGTGAATCATAAATTTTAAAAATATATATCTATAAAAAAATAATTCATATTCCGTATCTATACTATTGACCCTATTTGTTTAAAGTCTAGATGAAATGAAAAAAAAAAGAAACTTTTTTACCACCATTACATCTCTTATAATTAAATAGAAACAGAAATAATTAGAGAAATTATTATAAATATTTAGAAAAGTTATTAAACTATTTACGAGTATAGACAGTAAAATTTTTATATATTTGTAAATAGTTTGACTAATTTTGATATATTTAAAAATATCACATATAATTATATATTTATATTTATATTTAGAAGAAAAGAAGTAAACCTAATGAAACCCTTTTTGTTTCTCTGAACTGTCCCTCCCCCACCGGCCACCGCCGTGGCCACTGCCACACCTATACAGTCTCTTTCTCAGATGGGCTTACAAGTAATCTCCAACTTGAAGAAGAAGAAGAAAAAGGAAGACAGAATCAGCCTTAATTCTCTCTTTTTTAAACACAAAATCAGTCGTCCAGACTTGTGTTCTTTCAAAACGATGGAAACCCTTTGGACCCGAATAAATCTCTACTCTCAACTTTGATTACAATTCTTACTATATTGAGATGACGACCAGGAATCCGTGGAAAGATCCTTCAAGAATTTCATCAGTCGAGTTTTATCAAAGCACTGCACCACAAACATTCAAAAACTTACCAACACTTCCTCCAAAAACCCAGATGAATTGGTTTTTCTAGAATTCTTGTTATGCTATGCTGGATCCCACAATGTTCAGCAACTTTGCATTGATACTTACGATATTGGTAGTAGTTATGACTGGAAGTACTGTGTTTCAACATGTTCATCTGTCACTCAGTTGAAGATGGTATGTGGGTTTGTGGATGGTTGGGGAGTCTTGGCTTTACCATCTTTGAAGTTTTTAGAGATTGAATGTGATTACTGATTGGGATGAAGGGGATAAAAAGGCAGATTAATTACAATGTTCCCGGGCTGTCCAAATTTGAAATTTTTGGTTTTGGTTGACTATATATCTTTTTGAGACTGCTTCTATTCTAACAACTTGGAATTAACTTTTCCGGAAGTTAAATTGCTTACACCAACTCTTAAAACGGTCAATTTCATCAATGTGTTGCCCACTGTCAAGTCTGATTCTGAGTTTTCTTTCCTACACAAAGTATTGAATTTTTTTTTAATTCAAATTAAAGTAATATATAAATATAAAAAATTAAGAAATGGAAGTAATACATAAATGTAAACAATTAAGAAATGGAAGAAATACAAATACAAATTTAAAAATTAAAAAAAAAAAATTTAAAAAAAATTCCCTCTGGTGGGAATCAAAACCACATGCACAAGGCAAAGTGAGATTATTGGGCAGCCACACACCAATAGCCTAAAGGTGTATTATTGAACATCTTAGAAACAGATATAAATAAAATTGAAACAGAACACGGAAAAACTACTTTTTGTAATTCCTTAAGTTTGACCCATTTTTTAAAAAATGTTTCTCAAAATTTATATGATACAAATTTAATTGTATTAACGATCTATAGGTTTGTAGTTCTAATCATCACTTTGGAGTAAAAAACCATGAAAACAACTACATGAATACTGAGTTATTCACAGGTGGATAAATGTTCCTTTATTTATAATGCATTGGTATGAAATTCGGGTCACATATAATTATATAATTTATCTTCAAGAAGTCCATTTTGTTTGACTACTCAGCCCAGCTTTTCTTCAGTCCTTCAAAAGCCACTAAAGTGCTTAGGATAAAAAACGGTGCATATTTATCTGAGCTTTAACAATGTTCTTGTGATTATTCTTTCTTCTATAAATTTATAAATAATAGCAATCTAATGTAGAAGCGGTAGGCACATCTTCTGTCATGTTTTGTTCTAATGTTCCTGAATTTACGTTTTGGTTTTACTTATTGTTATATTCTCAAGTTTAAGTTTAAATGTGGGTATGTAGTTGTTAGATTCACAATTTCTATGTAAAGTTCATTGACTAAGTTTTGGTTTTGGTTAATTAAGGGCTCGTTTGGATTGACTTAAGAAAAAAATGTTTTTTAAAAAATTTATTTATATTTAAACATTTTTTTTAAAAAATTGATTAAAATACACTTCAAAAGCTATTTTGAGTGGTTGCCAAATACTCTAATTTCTTCCAAAATGATTTACTTTTTAAATTAAACACTTCAAAATATATTTCAAACACACCATAAGTTTGAAACTTTTGAAATCTACTTAAATTTGATGTTAGATTCATTACTTTTCAATGTTGGATATCATGATTGTTTCATTACTTTTGTTAGGATGATTTTGAGTTTGAGATTGTGCATGCCTAAGTTGGTTTTCTATTTTTTATAAAGAGAGATGTGGTTGACGATTTTTTTTTTTTTTAATTTTTTTTTAAATTTTTAATTATTATTATTATTATTATAAATTTAAATTTAAATTTAAATTATACAACAAACAATGACAGCATTGCCTGTCATCAAAAACTTGTTTCTGCCGATGCTATATAAATTGAATTGGGAGAAGGCACAACTGTCGATGCCATGTAGATTGCGTCGGGAGAAGGTAACGCCCCCCAACACCAATTTTGGGCATTGAGAGAGAGCCTTTTTGCTAACACCTGTTTGTTTGGCATTGGCAAAATCTCTGCTGAACGCCCATCTCGACCATCTCATAATTTCTTGTAGTGACCAACGTATAATCAACTAGCTCAAACATAAAATATAGATTATCAACTCAAGAATTAGAGGTTCGAATTCTCACTATCATTTAATTTGGCTTAATGTGGAATGTAATTTTTGTTAGTGTATGGATGATAAAAACAATATCAATCATGCATGTATACATACATCATTACAAAGTAAAGTAAATCATGAGGATGTTGTTCCAACCACTAGGAGTATATAGGAATAAATAGGGTGAAAAGGATAAAAAAATTCTAGAAATAAAAAAGTAATAAAGTGTGGATGACAAAAATAATTAAATAAATGTTCTATACTAGAGTTATTGCTAAGAAAAATATTTAAAGAAATTGTTGAGGGGTGAGGAAATAAAAAGAAATTTCTTCACTCTCGTTTCTTAAAATTTTGTTAGTCATTTTCATCACATATTTTTCGTGTATATATATTTTTATACCTACACATCACATTTTCCCAATATTTTTCCATCTAAAAAGTAATTACTGTTACTGTTATATTTTTAAGTCATCAAGTGGCAGAACCTTAGTTCTTTAGCATTGGTAAAGTTGATGGAATCCAGTAATAAAAGTGCCAAGACATATGTATGGACAACACACAAGTGGAAAGTGAGGCATGTGACATAGCAAGCGAAACGCAGACCAATATACATGAGTAGGACACAAGGCACGGTGTGGGTAGGCGGCCCACACCTCGTGCTTAGAGGTTAACACAAGCAGGCGTACGCACGCCAACCTACGAGCACCATAGGGCTCGGACGCAAGCGTGGCCCACACAACGGCACACTCCACAAGCGAGGGTGTTGGGCGCACGCAAGGCCATGCAACATACGAGCATCACAAGCACACGCTATGCAACGAGCGACAAGGCAACACGCACACAGTGTGCGGGAGCGGCAACCTTGATGCCATCTTGGCACAAGCGATCAAGCACGTACTCAAGGTAGGGCAAGCTTGGTCCAAGACCAAGGAAAGTGCAAGCCATCAGGTTCTTGTCTACATAACTTGTATGCACGACATAGCAAGCATTTTGAGAGGCACTTAATAATAGAAGATTATTATTAAGTATGCTAGTCCAAATAAGCTAGCTAGCATGATTATAGGCAAGAATGGTGGACATTCATGATCATATGCCATCATGGATGGTTATTCTCTAGTTTGTAGGAAGGTGGTCCTAAAATGATGTAAGTGGGAAGTGGATGCAAAATTGTAGGAAGAAATGGTTATGCCCCATCATCCTAAAATGTAGGAAAAATAAGAGGACATAGGAGAGGCCCTAAATCCATGGGTAGTGGGCGGTTTTACCTCACTTAGGGCCACTCTCACATTTCTCTCATACTTCCCTCCCTCCCGCACTATAAAAGGATGACTGTGGGCCGTCCAAGGCATCCAACAAAATCCAATCCTTTAGGCATTTTTTGGAAGATCTCTTGCTAAGGAAGAACTTCGTTGCAAGGAGACCTCTCATCTCGATTCTTGTAAGCTTGATTTTGATAGTGCTTATCAATAA

mRNA sequence

ATGACAAAGGGAATCCGTGACCGTGCTATGAGACAGTTGTTGTCACTTCCGCATCTTAGACTAGGACATAGAGAATCCGTGGAAAGATCCTTCAAGAATTTCATCAGTCGAGTTTTATCAAAGCACTGCACCACAAACATTCAAAAACTTACCAACACTTCCTCCAAAAACCCAGATGAATTGGTTTTTCTAGAATTCTTGTTATGCTATGCTGGATCCCACAATGTTCAGCAACTTTGCATTGATACTTACGATATTGGTAGTAGTTATGACTGGAAGTACTGTGTTTCAACATGTTCATCTGTCACTCAGTTGAAGATGGGCTCGGACGCAAGCGTGGCCCACACAACGGCACACTCCACAAGCGAGGGTGTTGGGCGCACGCAAGGCCATGCAACATACGAGCATCACAAGCACACGCTATGCAACGAGCGACAAGGCAACACGCACACAGTGTGCGGGAGCGGCAACCTTGATGCCATCTTGGCACAAGCGATCAAGCACGTACTCAAGGTAGGGCAAGCTTGGTCCAAGACCAAGGAAAGTGCAAGCCATCAGGCATTTTTTGGAAGATCTCTTGCTAAGGAAGAACTTCGTTGCAAGGAGACCTCTCATCTCGATTCTTGTAAGCTTGATTTTGATAGTGCTTATCAATAA

Coding sequence (CDS)

ATGACAAAGGGAATCCGTGACCGTGCTATGAGACAGTTGTTGTCACTTCCGCATCTTAGACTAGGACATAGAGAATCCGTGGAAAGATCCTTCAAGAATTTCATCAGTCGAGTTTTATCAAAGCACTGCACCACAAACATTCAAAAACTTACCAACACTTCCTCCAAAAACCCAGATGAATTGGTTTTTCTAGAATTCTTGTTATGCTATGCTGGATCCCACAATGTTCAGCAACTTTGCATTGATACTTACGATATTGGTAGTAGTTATGACTGGAAGTACTGTGTTTCAACATGTTCATCTGTCACTCAGTTGAAGATGGGCTCGGACGCAAGCGTGGCCCACACAACGGCACACTCCACAAGCGAGGGTGTTGGGCGCACGCAAGGCCATGCAACATACGAGCATCACAAGCACACGCTATGCAACGAGCGACAAGGCAACACGCACACAGTGTGCGGGAGCGGCAACCTTGATGCCATCTTGGCACAAGCGATCAAGCACGTACTCAAGGTAGGGCAAGCTTGGTCCAAGACCAAGGAAAGTGCAAGCCATCAGGCATTTTTTGGAAGATCTCTTGCTAAGGAAGAACTTCGTTGCAAGGAGACCTCTCATCTCGATTCTTGTAAGCTTGATTTTGATAGTGCTTATCAATAA

Protein sequence

MTKGIRDRAMRQLLSLPHLRLGHRESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTYDIGSSYDWKYCVSTCSSVTQLKMGSDASVAHTTAHSTSEGVGRTQGHATYEHHKHTLCNERQGNTHTVCGSGNLDAILAQAIKHVLKVGQAWSKTKESASHQAFFGRSLAKEELRCKETSHLDSCKLDFDSAYQ
Homology
[Close]
BLAST of Clc08G01090 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 121.7 bits (304), Expect = 7.8e-24
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 15  SLPHLRLGHRESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSH 74
           SL   +    E+ E+SFK FI RVLSKHCTTNI KLT T+S+N DELV +EFL+CYAGS 
Sbjct: 57  SLSSFKDNDDEAKEKSFKYFIFRVLSKHCTTNIHKLTYTTSQNEDELVLVEFLICYAGSR 116

Query: 75  NVQQLCIDTYDIGSSYDWKYCVSTCSSVTQLKM 108
           NVQQLCI+TYD    YDW YC S CSS+  LKM
Sbjct: 117 NVQQLCINTYDTIGIYDWNYCFSVCSSLIGLKM 149

[Close]
BLAST of Clc08G01090 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 9.5e-22
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLCI+TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCINTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. NCBI nr
Match: XP_008459618.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLC++TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVNTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLC++TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVNTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. NCBI nr
Match: XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-21
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES +R FK FI RVLSKHC TNIQKLT TSS + DELV +EFL+CYAGSHNVQQLCI+  
Sbjct: 410 ESKQRYFKYFIIRVLSKHCATNIQKLTYTSSGDEDELVLVEFLICYAGSHNVQQLCINAT 469

Query: 85  DIG-SSYDWKYCVSTCSSVTQLKM 108
            IG   + W YC STCSS+ +LKM
Sbjct: 470 YIGVDDHVWNYCFSTCSSLIRLKM 493

[Close]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.6e-22
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLCI+TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCINTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLC++TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVNTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match: A0A1S3CBU6 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLSKHC T+IQKLT TSS N DE V +E L+CYAGSHNVQQLC++TY
Sbjct: 78  ESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVNTY 137

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +IG  Y+W YC   CSS+ +LKM
Sbjct: 138 NIG-IYEWDYCFPICSSLIELKM 159

[Close]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match: A0A0A0KUU7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.6e-20
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0 

Query: 25  ESVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTY 84
           ES  RSFK FI RVLS HC TNI KLT TSS N DE V +E L+CYAGSH VQQLCI+TY
Sbjct: 65  ESKRRSFKFFIFRVLSIHCATNIHKLTYTSSPNGDECVLVELLICYAGSHKVQQLCINTY 124

Query: 85  DIGSSYDWKYCVSTCSSVTQLKM 108
           +I   Y+W YC   CSS+ +LKM
Sbjct: 125 NI-CIYEWDYCFPMCSSLIELKM 146

[Close]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 26  SVERSFKNFISRVLSKHCTTNIQKLTNTSSKNPDELVFLEFLLCYAGSHNVQQLCIDTYD 85
           S + SFKNFI R+LS+ C T IQKL+ TSS N DE+V +E L+C+A  HNV++L +DTY 
Sbjct: 179 SKQSSFKNFIFRILSERCRTKIQKLSYTSSGNEDEVVLVELLICFARRHNVRELYLDTYY 238

Query: 86  IGSSYDWKYCVSTCSSVTQLKM 108
           I S YDWKYC+S CSS+T LKM
Sbjct: 239 I-SVYDWKYCLSACSSLTVLKM 259

The following BLAST results are available for this feature:
BLAST of Clc08G01090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890214.17.8e-2464.52F-box/LRR-repeat protein At3g26922-like [Benincasa hispida][more]
KAA0039267.19.5e-2268.67F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat... [more]
XP_008459618.11.2e-2167.47PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo][more]
XP_008459617.11.2e-2167.47PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
XP_038890213.14.7e-2167.86uncharacterized protein LOC120079853 [Benincasa hispida][more]
BLAST of Clc08G01090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TCF14.6e-2268.67F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CB416.0e-2267.47F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A1S3CBU66.0e-2267.47F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KUU79.6e-2065.06F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650440 PE=4 ... [more]
A0A6J1CKA94.0e-1860.98LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... [more]
BLAST of Clc08G01090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G01090.1Clc08G01090.1mRNA