Clc08G00220 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG MEHDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTDVNALEISQVETKCHLPLF Homology
BLAST of Clc08G00220 vs. NCBI nr
Match: XP_038902405.1 (uncharacterized protein LOC120089044 [Benincasa hispida]) HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Clc08G00220 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06 Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Clc08G00220 vs. NCBI nr
Match: XP_024953850.1 (uncharacterized protein LOC112498130 [Citrus sinensis]) HSP 1 Score: 57.4 bits (137), Expect = 7.7e-05 Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 0
BLAST of Clc08G00220 vs. NCBI nr
Match: XP_022873105.1 (uncharacterized protein LOC111392056, partial [Olea europaea var. sylvestris]) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04 Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of Clc08G00220 vs. NCBI nr
Match: XP_042752096.1 (uncharacterized protein LOC122194868 [Lactuca sativa]) HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04 Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9GK35 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21798 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04 Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9HWF8 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04 Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9GUX6 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18337 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04 Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 0
BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9G7U9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26122 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04 Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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