Clc08G00220 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G00220
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
LocationClcChr08: 356159 .. 356440 (+)
RNA-Seq ExpressionClc08G00220
SyntenyClc08G00220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG

mRNA sequence

ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG

Coding sequence (CDS)

ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGTGTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGACAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG

Protein sequence

MEHDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTDVNALEISQVETKCHLPLF
Homology
BLAST of Clc08G00220 vs. NCBI nr
Match: XP_038902405.1 (uncharacterized protein LOC120089044 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 4  DRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQ 50
          D  Q +VNASFPDE +LK+ E  PWY DIVNFLVCKQFPE++ + Q
Sbjct: 26 DHIQSEVNASFPDEKLLKIEEL-PWYVDIVNFLVCKQFPENYTSHQ 70

BLAST of Clc08G00220 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 9  DVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRT 68
          D+   FPDE V+K     PWY DIVN+LVC Q+PE+FNA Q +  + ++    + E P  
Sbjct: 12 DIEERFPDEHVMKAKSQEPWYTDIVNYLVCNQWPEEFNAHQKKKLRHESKFYCWDE-PYL 71

Query: 69 MRSGVTDVNALEISQVET-----KCH 90
           R G+  +    + + ET      CH
Sbjct: 72 YRLGLDHILRRCVPEYETHSILKSCH 96

BLAST of Clc08G00220 vs. NCBI nr
Match: XP_024953850.1 (uncharacterized protein LOC112498130 [Citrus sinensis])

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-05
Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 0

Query: 3   HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLF 62
           H+  +L ++ +FPDE +L+V    PWYADIVN+LV +  PE+    Q    K+D    ++
Sbjct: 868 HNEDELPLHENFPDEQLLQVGTITPWYADIVNYLVTRTVPEEITRAQKAKIKSDAKYYVW 927

Query: 63  SE-------TPRTMRSGVTDVNALEISQVETKCH 90
            E       + + +R  V +    E + + T CH
Sbjct: 928 DEPYLWKHCSDQVIRRCVPET---EFTSILTFCH 958

BLAST of Clc08G00220 vs. NCBI nr
Match: XP_022873105.1 (uncharacterized protein LOC111392056, partial [Olea europaea var. sylvestris])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 3   HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKA 56
           H+R+ L +  SFPDE +L VT+ +PW+ADIVN+LV K+   D    + +  KA
Sbjct: 254 HERETLPLQESFPDEQLLLVTDTSPWFADIVNYLVTKKISSDLTTARRQKLKA 306

BLAST of Clc08G00220 vs. NCBI nr
Match: XP_042752096.1 (uncharacterized protein LOC122194868 [Lactuca sativa])

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 8   LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSE 65
           L +   FPDE +  +T+  PWYADIVNFLV K++P+ F   Q    K+D    ++ E
Sbjct: 937 LPLRDEFPDEHLFSLTQSIPWYADIVNFLVTKRYPDTFTRAQKDKLKSDAKYYVWDE 993

BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 10   VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRT 69
            +N +FPDE +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P  
Sbjct: 1131 INDNFPDEQLLAIVASDVPWYADIVNYLTCGIIPFDLSAQQKKKFLFDTR-RYFWDDPFL 1190

Query: 70   MRSGVTD-----VNALEISQVETKCH 90
             + G  +     V  +E++ +  +CH
Sbjct: 1191 FKQGPDNILRRCVPEIEMNDILEQCH 1215

BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9GK35 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21798 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 10   VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRT 69
            +N +FPD+ +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P  
Sbjct: 975  INDNFPDDQLLAIVASDVPWYADIVNYLTCGIIPFDLSAQQKKKFLFDTR-RYFGDDPFL 1034

Query: 70   MRSGVTD-----VNALEISQVETKCH 90
             + G  +     V  +E++ +  +CH
Sbjct: 1035 FKQGPDNILRHCVPEIEMNDILEQCH 1059

BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9HWF8 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 10   VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRT 69
            +N +FPDE +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P  
Sbjct: 1229 INDNFPDEQLLAIVASDVPWYADIVNYLTCGIIPFDLSAQQKKKFLFDTR-RYFWDDPFL 1288

Query: 70   MRSGVTD-----VNALEISQVETKCH 90
             + G  +     V  +E++ +  +CH
Sbjct: 1289 FKQGPDNILRRCVPEIEMNDIFEQCH 1313

BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9GUX6 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18337 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 10   VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRT 69
            +N +FPDE +L  V    PWYADIVN+L C   P D +  Q + +  DT  + F + P  
Sbjct: 932  INDNFPDEQLLAIVVSDVPWYADIVNYLTCGIIPFDLSTQQKKKFLFDTR-RYFWDDPFL 991

Query: 70   MRSGVTD-----VNALEISQVETKCHL 91
             + G+ +     V  +E++ +  +CH+
Sbjct: 992  FKQGLDNILRRCVPEVEMNDIIEQCHV 1017

BLAST of Clc08G00220 vs. ExPASy TrEMBL
Match: A0A2G9G7U9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26122 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 8    LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKAD 57
            L ++ SFPDE +  V + +PWYADIVN+LV K  P+D +  Q    K+D
Sbjct: 1115 LPLHDSFPDEYLFSVQKASPWYADIVNYLVTKSLPKDLSRTQRDKIKSD 1163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902405.11.7e-0765.22uncharacterized protein LOC120089044 [Benincasa hispida][more]
WP_217833161.11.8e-0637.21DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002][more]
XP_024953850.17.7e-0531.91uncharacterized protein LOC112498130 [Citrus sinensis][more]
XP_022873105.11.3e-0445.28uncharacterized protein LOC111392056, partial [Olea europaea var. sylvestris][more]
XP_042752096.12.9e-0442.11uncharacterized protein LOC122194868 [Lactuca sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2G9FWY35.4e-0434.88Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=... [more]
A0A2G9GK355.4e-0433.72Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21798 PE=... [more]
A0A2G9HWF85.4e-0434.88Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=... [more]
A0A2G9GUX67.0e-0433.33Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18337 PE=... [more]
A0A2G9G7U97.0e-0446.94DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_261... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G00220.1Clc08G00220.1mRNA