Clc07G17190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G17190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Tetratricopeptide-like helical
Location	ClcChr07: 31651676 .. 31652092 (+)
RNA-Seq Expression	Clc07G17190
Synteny	Clc07G17190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACCGCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTTTTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAACTCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

Homology

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BLAST of Clc07G17190 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 96/138 (69.57%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGI SNEWAMDA+EWERNE E D VPPHLLADEDDDDD         NV 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIEND-VPPHLLADEDDDDD---------NVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S VSNY FP+AGFF S  R+DG  D +HC  GI CSLSK++E++ASNGM+SVRI+VRTIL
Sbjct: 61  STVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTIL 120

Query: 121 GFLMVMTIKIISAQTSKL 139
           GFL+V  +KIISA TS +
Sbjct: 121 GFLLVKILKIISAHTSNM 128

[Close]

BLAST of Clc07G17190 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGI SNEWAMDA+EWERNE E D VPPHLLADEDDDDD         NV 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIEND-VPPHLLADEDDDDD---------NVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S VSNY FP+AGFF S  R+DG    +HC  GI CSLSK++E++ASNGM+SVRI+VRTIL
Sbjct: 61  STVSNYSFPVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTIL 120

Query: 121 GFLMVMTIKIISAQTSKL 139
           GFL+V  +KIISA TS +
Sbjct: 121 GFLLVKILKIISAHTSNM 128

[Close]

BLAST of Clc07G17190 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-39
Identity = 97/138 (70.29%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERN--EIDVVPPHLLADEEDDE-------DGEYVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S +SNY F + G FG   R+D + DG   ILGIF SLSK IE++ASNGMNSVRI+VRTIL
Sbjct: 61  STISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTIL 120

Query: 121 GFLMVMTIKIISAQTSKL 139
           GFLMVMT+KIISAQ SK+
Sbjct: 121 GFLMVMTMKIISAQRSKM 129

[Close]

BLAST of Clc07G17190 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 90/127 (70.87%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERN--EIDVVPPHLLADEEDDE-------DGEYVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S +SNY F + G FG   R+D + DG H ILGIF SLSK IE++ASNGMNSVRI+VRTIL
Sbjct: 61  STISNYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTIL 118

Query: 121 GFLMVMT 128
           GFLMVMT
Sbjct: 121 GFLMVMT 118

[Close]

BLAST of Clc07G17190 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 70/137 (51.09%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D +PPHLLADEDD++D+           
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKD-IPPHLLADEDDEEDE----------- 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
               + +FP      SC RKD    GV C   I   L K  E++  N ++S+ I+   ++
Sbjct: 61  ---MSTKFPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVV 120

Query: 121 GFLMVMTIKIISAQTSK 138
           GFLM MTIKII+++ SK
Sbjct: 121 GFLMFMTIKIIASKRSK 120

[Close]

BLAST of Clc07G17190 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 97/138 (70.29%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERN--EIDVVPPHLLADEEDDE-------DGEYVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S +SNY F + G FG   R+D + DG   ILGIF SLSK IE++ASNGMNSVRI+VRTIL
Sbjct: 61  STISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTIL 120

Query: 121 GFLMVMTIKIISAQTSKL 139
           GFLMVMT+KIISAQ SK+
Sbjct: 121 GFLMVMTMKIISAQRSKM 129

[Close]

BLAST of Clc07G17190 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 96/140 (68.57%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERN  EID VPPHLLADE+DD+     D D+    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN--EIDVVPPHLLADEEDDE-----DGDEHVTT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDG--VHCILGIFCSLSKAIERKASNGMNSVRIMVRT 120
           S +SNY FP+ G F     +D + DG   H ILGIFCSLSK IE++ASNGM+SVRI+VRT
Sbjct: 61  STISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRT 120

Query: 121 ILGFLMVMTIKIISAQTSKL 139
           ILGFLMVMT+KIISAQ SK+
Sbjct: 121 ILGFLMVMTMKIISAQRSKM 133

[Close]

BLAST of Clc07G17190 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 90/127 (70.87%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERN--EIDVVPPHLLADEEDDE-------DGEYVT 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
           S +SNY F + G FG   R+D + DG H ILGIF SLSK IE++ASNGMNSVRI+VRTIL
Sbjct: 61  STISNYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTIL 118

Query: 121 GFLMVMT 128
           GFLMVMT
Sbjct: 121 GFLMVMT 118

[Close]

BLAST of Clc07G17190 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-22
Identity = 70/137 (51.09%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVM 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D +PPHLLADEDD++D+           
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKD-IPPHLLADEDDEEDE----------- 60

Query: 61  SIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMNSVRIMVRTIL 120
               + +FP      SC RKD    GV C   I   L K  E++  N ++S+ I+   ++
Sbjct: 61  ---MSTKFPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVV 120

Query: 121 GFLMVMTIKIISAQTSK 138
           GFLM MTIKII+++ SK
Sbjct: 121 GFLMFMTIKIIASKRSK 120

[Close]

BLAST of Clc07G17190 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD 48
          M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Clc07G17190 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.5e-06
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADE--DDDDDDDGNDNDDEN 59
          +EALAMAG+D  EW +  +EWE  E+    VP HLLAD+  +++ ++D  DNDD++
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQES---VVPLHLLADDFKEEEQEEDHQDNDDDD 53

The following BLAST results are available for this feature:

BLAST of Clc07G17190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015383.1	2.6e-41	69.57	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	1.7e-40	68.84	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16880.1	5.4e-39	70.29	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	3.3e-36	70.87	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	1.0e-21	51.09	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of Clc07G17190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G17190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZU0	2.6e-39	70.29	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KWE7	1.3e-38	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5A7TS68	1.6e-36	70.87	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	5.0e-22	51.09	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	2.4e-08	68.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Clc07G17190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	6.5e-06	46.43	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G17190.1	Clc07G17190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane