Clc07G16530 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATATGTAGCACCAAACATTGCCTAGTGTCGAATTTGGGCTGACTTTGGGCCACAGGCTATTTAATTGGGCCTGTTCACAAAAGCCCACCAAAAATGATCAACTCTTTCTGTTCTTTAGCCGTTGCCTCCGGCTATAAGTGTGGCATTTCTTCCTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAAAATGCAGACAAGTCTTCTGAAGCTTCTCTTAGAAACCCTAGAAGGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAGAACGCCAAGAAGAGGAAGCCCAATGCTACCCACAATCACAATGCCCATAACCCCACCAATGGTAGTGAAAACAATGCATCGGAGGCACTTCCATTGGAACCCTTCAGCTTTTTTCTGGATGAGTTCCAGACTGCTAATGGTGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGGTACTTTACTAATCTGGATCATATTCTTGTAACATCTTTTGGAGTGTTTAATTGCTTTTGGCATTCTAATTAACCGTTTTAGTAAAATGGTCTTTAAAGTATGCATTTTTCAGTAATGCGTGAGAATTTATCTGATTTTTGTTATCATTGGAGAATTTTGTAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAACTTTGGTGAAACATATCAAGGAAGCTTTTGGGTCATCCTGGAAAGAAGTTCTTTGTAAAGGGGAACACTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCAATTGAACTTTTAAAGTAAGATGGAGACTGCTTTTCTGCTGGTATTGATGTATATGGAATAAGTGCCTGTTTTTGTCTAACTCATTTTTATTCATCAGGGGTTTTCGATCGCTAACTCAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTACTTTGAAGTTTCTTTCCATGCTCTTTTCTCTTTTAGGTGATTCAAAGATAGGAGTAACATATGTTTTCGTTGGTCAATAATGTTGCAAGTTGTTGGTGGTTCACTTATTTGTCAATTGAATGTTTGTCGTATATCAACACTATAAAGAGTGCGGATGATTATTGTCTACATTTTGCTTGCTGGAACAAGTGGGAGAAACTCCACGACATGTTTTAGAGTTCCAAAGTATTCAAATTGTTATCTTTATTTTGAAACCACCTCTTAGTTTCAAAATTTTGGGTTTGGGAGATGAAGATAATTAAAATAATCATCAGAGGCAAAAGCACTGCTGAATTTGATGGTTTGCACGTCAGTCTGATCCTGTATTTTCATTACTTTTGCTTTTAATTGTCCTGATTTCAGAACCCGGTCTTCTCTTTGTACTTAGTTCCTGTTTTGATCTTCATGGTCACATGATTAATTATGAATAATGTTTATAATATGCTGCTTTTCTTGATGCAAGCTCAAGCAGTGATTTAGCTTCTTGATTTTTGAACGCATATCAGCAATAGCAATTTGTGATTTTTATGGCTCTATTGTTTTTTTGGTAACTGGATGTCTTGGCCAATTACTGGGTTGCAAGTTATTTCATATTTTTGGAGTGAGACATGTTATGCATCCGTCCTACTAGTTTATTTTATTGGGTTTGGGATATGATGACAAGCTAGAAAAATCTCTCAGATGCAGCTGCTGTGCTGAACTTGATATTTGCACGTCAGTCTGATCCCATATTCTCAATGCCATATCGACATAGTTGTCATTTCTGAGCTTCTGAATGCTAGACTTGTATTTACGTTATTATTTTTATTGATTTTTTAAATATGGATAAAGATAATGGTATTTTAGCATTCCCTCTAACCTCTTGAAACAAACATTTACATCTTTAACGTTTCCTGCTTTAAAAATTGTGTGTTTCCCATTCTTCTTTTGATTTAAGTACAACCATTTTATGCACGAATCTGTTACTTTTATAAGAAATCTTCAAAGTTTGGGAAATGATGACAAATTTGAAATGTTCAACTGAGGTAGATACTGTGCTGAACTCTATTGCACGTCAGTCTGATCCCTATAATCTTTTATTGGGTGTAATCTAAGTTCTTACTGTGGAAAGTATTTCTTTTGGTCCAAGATTGAGGGGACAGGGTGAATTCCGGGTTTTGTACTTCTGTTGTGATTTGGATCATTATCTCGAATCCACATTTCTGCTGAATTGGCAAAATCCTTTTATCAAATGAAACTGCATCTCCTCGAACCTCCATGTAGTCATAGTATTAGATTAGCATAATTCCAAATGACATCTTATTTCAATTTTCTCAAACTGTCTATAATGCAGTCTTACTTCGTGTTTTTGTTGCATTGCCATGTGATTTCTTAAAATCTTCAATTGTCAGTGTTGGTTTTCAGTTTTGCTATTTTTAATGGTGGACGTGCTGAAGGGATTGACCATAAGCTTCTTGAACTGTTATTGTTTTTCCCTTTATGATGGGTGCAGGTCCAGCTGTTGAAGAACCGTGTTAACATTGCGAGTGGTACACCGAGCAGGTTAGCTTTCGGTATTGGGTTTATCACTATTGTGGTTCAAGAGTTGCAGTTCTAGGATTTTGTTTTTGATAAAGGAGTGCTGTTGAGTATCGTTGGAGGAAAATAAATATTGAAAATCTACAACTTTCTTCCTGGATCTACCACCTCTTGCATTGATACTAAAAATTCATTTAGTTTCTTTCCATTCATTATAAAGTTTGTCTGACTGTTTGACTGATCCTTTATCACATTCCCTCTCTTCTGTATCAATTTTAGGATTAAAAAATTGATTGATCTCGAGGCCTTGGGGCTTTCAAGATTAGCAGTGATTGTGCTTGACATTCAACCAGACGTTAAGGGATATTCTTTATTTTCGCTTCCACAAGTCAGGTTTGAACCACATACTTGTGTCAATTTCCCTAATGTATGTTCAATTCTTTTGTTCTATGCTCTTAGATTATGAAAATACAAGTTAAAAAATTGTTTTTGTTTAGATACGGGAAAACTGATCATTGGACTCTCACTCATAAAATTCATATTGCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCGCGAGTAGTCGACGGTGAGCTGCAAATTTGCCTCTTTGGACCTTTACAACCTTCTAGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGCGAATAAAGTACCAACAAAGTCGAAATTTTGACCAAACCGATTGTTAATGTATCCTCATGAGTTCCCACAAATTAATTTAATCTCTTGATCATTTTTCCCTATCCTCCATTCCTACATTCCGATTTGGTTGGGTTGTACCAAAATTTTGCTTATAGTTACCAAAATACATCTGAAAATGGTCATATGTGAAATGTTAGATGGAAGGTGTGGTGTTGTACATTTCTTTATCTCCCATTTTCCAGGGCAGGAGAAATAGGTAAGCCTTTACATATTAATATGTTAGGGATTGTGGAATATTACATACATTGTTCACTGCTGGTAGATGTAGATATAGAATATGTATTCTATATCATTAAATTAACATAAATACCTCGAGCCAAAATGGTTGTACATGTGGAGTTTGGTATGGAAATCTTATTTTTAAACAAAGTATTCAATTAAAA GATATGTAGCACCAAACATTGCCTAGTGTCGAATTTGGGCTGACTTTGGGCCACAGGCTATTTAATTGGGCCTGTTCACAAAAGCCCACCAAAAATGATCAACTCTTTCTGTTCTTTAGCCGTTGCCTCCGGCTATAAGTGTGGCATTTCTTCCTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAAAATGCAGACAAGTCTTCTGAAGCTTCTCTTAGAAACCCTAGAAGGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAGAACGCCAAGAAGAGGAAGCCCAATGCTACCCACAATCACAATGCCCATAACCCCACCAATGGTAGTGAAAACAATGCATCGGAGGCACTTCCATTGGAACCCTTCAGCTTTTTTCTGGATGAGTTCCAGACTGCTAATGGTGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAACTTTGGTGAAACATATCAAGGAAGCTTTTGGGTCATCCTGGAAAGAAGTTCTTTGTAAAGGGGAACACTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCAATTGAACTTTTAAAGGGTTTTCGATCGCTAACTCAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTCCAGCTGTTGAAGAACCGTGTTAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGATCTCGAGGCCTTGGGGCTTTCAAGATTAGCAGTGATTGTGCTTGACATTCAACCAGACGTTAAGGGATATTCTTTATTTTCGCTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCGCGAGTAGTCGACGGTGAGCTGCAAATTTGCCTCTTTGGACCTTTACAACCTTCTAGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGCGAATAAAGTACCAACAAAGTCGAAATTTTGACCAAACCGATTGTTAATGTATCCTCATGAGTTCCCACAAATTAATTTAATCTCTTGATCATTTTTCCCTATCCTCCATTCCTACATTCCGATTTGGTTGGGTTGTACCAAAATTTTGCTTATAGTTACCAAAATACATCTGAAAATGGTCATATGTGAAATGTTAGATGGAAGGTGTGGTGTTGTACATTTCTTTATCTCCCATTTTCCAGGGCAGGAGAAATAGGTAAGCCTTTACATATTAATATGTTAGGGATTGTGGAATATTACATACATTGTTCACTGCTGGTAGATGTAGATATAGAATATGTATTCTATATCATTAAATTAACATAAATACCTCGAGCCAAAATGGTTGTACATGTGGAGTTTGGTATGGAAATCTTATTTTTAAACAAAGTATTCAATTAAAA ATGATCAACTCTTTCTGTTCTTTAGCCGTTGCCTCCGGCTATAAGTGTGGCATTTCTTCCTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAAAATGCAGACAAGTCTTCTGAAGCTTCTCTTAGAAACCCTAGAAGGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAGAACGCCAAGAAGAGGAAGCCCAATGCTACCCACAATCACAATGCCCATAACCCCACCAATGGTAGTGAAAACAATGCATCGGAGGCACTTCCATTGGAACCCTTCAGCTTTTTTCTGGATGAGTTCCAGACTGCTAATGGTGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGCATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAAACTTTGGTGAAACATATCAAGGAAGCTTTTGGGTCATCCTGGAAAGAAGTTCTTTGTAAAGGGGAACACTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCAATTGAACTTTTAAAGGGTTTTCGATCGCTAACTCAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTCCAGCTGTTGAAGAACCGTGTTAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGATCTCGAGGCCTTGGGGCTTTCAAGATTAGCAGTGATTGTGCTTGACATTCAACCAGACGTTAAGGGATATTCTTTATTTTCGCTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCGCGAGTAGTCGACGGTGAGCTGCAAATTTGCCTCTTTGGACCTTTACAACCTTCTAGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGCGAATAA MINSFCSLAVASGYKCGISSSSKTLKRMGGLENADKSSEASLRNPRRKRKQRPPNKPKNAKKRKPNATHNHNAHNPTNGSENNASEALPLEPFSFFLDEFQTANGVQVSSLEFESMKDRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVLCKGEHLEGRTEPGSPAVLIISTSALRSIELLKGFRSLTQECHAVKLFSKHMKIEEQVQLLKNRVNIASGTPSRIKKLIDLEALGLSRLAVIVLDIQPDVKGYSLFSLPQVRDEFWDLYKSYLHPRVVDGELQICLFGPLQPSSKRRKKEVASPGE Homology
BLAST of Clc07G16530 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida]) HSP 1 Score: 481.9 bits (1239), Expect = 4.2e-132 Identity = 247/277 (89.17%), Postives = 261/277 (94.22%), Query Frame = 0
BLAST of Clc07G16530 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa]) HSP 1 Score: 470.7 bits (1210), Expect = 9.6e-129 Identity = 244/274 (89.05%), Postives = 256/274 (93.43%), Query Frame = 0
BLAST of Clc07G16530 vs. NCBI nr
Match: XP_004152079.1 (protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cucumis sativus]) HSP 1 Score: 467.6 bits (1202), Expect = 8.1e-128 Identity = 239/274 (87.23%), Postives = 256/274 (93.43%), Query Frame = 0
BLAST of Clc07G16530 vs. NCBI nr
Match: XP_008453922.1 (PREDICTED: protein CMSS1 [Cucumis melo]) HSP 1 Score: 466.1 bits (1198), Expect = 2.4e-127 Identity = 242/274 (88.32%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Clc07G16530 vs. NCBI nr
Match: TYK16952.1 (protein CMSS1 [Cucumis melo var. makuwa]) HSP 1 Score: 463.8 bits (1192), Expect = 1.2e-126 Identity = 241/274 (87.96%), Postives = 253/274 (92.34%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy Swiss-Prot
Match: Q5FVR6 (Protein CMSS1 OS=Rattus norvegicus OX=10116 GN=Cmss1 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 6.9e-13 Identity = 47/152 (30.92%), Postives = 85/152 (55.92%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy Swiss-Prot
Match: Q9CZT6 (Protein CMSS1 OS=Mus musculus OX=10090 GN=Cmss1 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 9.0e-13 Identity = 48/152 (31.58%), Postives = 85/152 (55.92%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy Swiss-Prot
Match: Q2T9Y1 (Uncharacterized protein C3orf26 homolog OS=Bos taurus OX=9913 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 2.6e-12 Identity = 47/133 (35.34%), Postives = 78/133 (58.65%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy Swiss-Prot
Match: Q5XJK9 (Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 8.5e-11 Identity = 73/266 (27.44%), Postives = 126/266 (47.37%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy Swiss-Prot
Match: Q68EV5 (Protein CMSS1 OS=Xenopus laevis OX=8355 GN=cmss1 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10 Identity = 75/271 (27.68%), Postives = 123/271 (45.39%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 4.7e-129 Identity = 244/274 (89.05%), Postives = 256/274 (93.43%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy TrEMBL
Match: A0A0A0KUA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 3.9e-128 Identity = 239/274 (87.23%), Postives = 256/274 (93.43%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1) HSP 1 Score: 466.1 bits (1198), Expect = 1.1e-127 Identity = 242/274 (88.32%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 5.7e-127 Identity = 241/274 (87.96%), Postives = 253/274 (92.34%), Query Frame = 0
BLAST of Clc07G16530 vs. ExPASy TrEMBL
Match: A0A6J1IXV6 (protein CMS1 OS=Cucurbita maxima OX=3661 GN=LOC111479452 PE=4 SV=1) HSP 1 Score: 459.1 bits (1180), Expect = 1.4e-125 Identity = 238/283 (84.10%), Postives = 259/283 (91.52%), Query Frame = 0
BLAST of Clc07G16530 vs. TAIR 10
Match: AT2G43110.1 (unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). ) HSP 1 Score: 261.5 bits (667), Expect = 8.2e-70 Identity = 145/280 (51.79%), Postives = 197/280 (70.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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