Clc07G15860 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G15860
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr07: 30341520 .. 30341998 (+)
RNA-Seq ExpressionClc07G15860
SyntenyClc07G15860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAATATCTCTATGCATTACATGGTCGACGTTCAGCTAGAACTCCCTTCTTTCGTTATAGAATCTAAATGTCATGTTTCTTCCAATGTTGTGTTACAAGAGACATGTGCAGTCGATGTCTGGCTTGAGTTTTTGCCGCTTGTGTTTTGCCTGCTGCTTATTTTGTATGTAAGGTAGTGTGATTCTTCTCCAATAACTCTGATTGTAATTCTGCTCATTGTGTGATTAATGGTCGTATGTTAGAGTTGGTTGGCTGTAGAAAGTAGAAACCTCTATCTTTGGTGCCTCTAATTCCAATTTTTTAACATGTTTGCTCTTTGTATTTTCACCACTGTTTAAAACTGACTTCAAATACAAACTCTTCCAAAACACCCCCTTTAGCAAAGATATCTGATTACTTGTAAAGTTCTGTTGTGTTTTTGGATGGGATTTCATGATGCAGGTTAGCAGCTCTGCATTTTAGGCTACCTTTATGA

mRNA sequence

ATGGTCAATATCTCTATGCATTACATGGTCGACGTTCAGCTAGAACTCCCTTCTTTCGTTATAGAATCTAAATGTCATGTTTCTTCCAATGTTGTGTTACAAGAGACATGTGCAGTCGATGTCTGGCTTGAGTTTTTGCCGCTTGTGTTTTGCCTGCTGCTTATTTTGTATGTAAGGTTAGCAGCTCTGCATTTTAGGCTACCTTTATGA

Coding sequence (CDS)

ATGGTCAATATCTCTATGCATTACATGGTCGACGTTCAGCTAGAACTCCCTTCTTTCGTTATAGAATCTAAATGTCATGTTTCTTCCAATGTTGTGTTACAAGAGACATGTGCAGTCGATGTCTGGCTTGAGTTTTTGCCGCTTGTGTTTTGCCTGCTGCTTATTTTGTATGTAAGGTTAGCAGCTCTGCATTTTAGGCTACCTTTATGA

Protein sequence

MVNISMHYMVDVQLELPSFVIESKCHVSSNVVLQETCAVDVWLEFLPLVFCLLLILYVRLAALHFRLPL
Homology
[Close]
BLAST of Clc07G15860 vs. NCBI nr
Match: KGN53774.1 (hypothetical protein Csa_015148 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 9.4e-16
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MVNISMHYMVDVQLELPSFVIESKCHVSSNVVLQETCAVDVWLEFLPLV-FCLLLILYVR 60
          MV I  H+MV VQL LP FV ES+CHVSSN+VLQETCAV+VWLEFL LV FCL+L+LYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFRL 68
          LAALHF L
Sbjct: 61 LAALHFGL 68

[Close]
BLAST of Clc07G15860 vs. ExPASy TrEMBL
Match: A0A0A0KY42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126440 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-16
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1  MVNISMHYMVDVQLELPSFVIESKCHVSSNVVLQETCAVDVWLEFLPLV-FCLLLILYVR 60
          MV I  H+MV VQL LP FV ES+CHVSSN+VLQETCAV+VWLEFL LV FCL+L+LYVR
Sbjct: 1  MVTIFNHFMVGVQLGLPPFVTESECHVSSNIVLQETCAVNVWLEFLLLVLFCLVLMLYVR 60

Query: 61 LAALHFRL 68
          LAALHF L
Sbjct: 61 LAALHFGL 68

The following BLAST results are available for this feature:
BLAST of Clc07G15860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53774.19.4e-1676.47hypothetical protein Csa_015148 [Cucumis sativus][more]
BLAST of Clc07G15860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc07G15860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY424.6e-1676.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126440 PE=4 SV=1[more]
BLAST of Clc07G15860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G15860.1Clc07G15860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane