Clc07G15705 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G15705
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	disease resistance protein RGA2-like
Location	ClcChr07: 30220753 .. 30221324 (+)
RNA-Seq Expression	Clc07G15705
Synteny	Clc07G15705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGATGTGGTAGTGAGGATGGTATTAGAAGCCTTAAAAAGCTACATATTTATGGATGTGATAATGAAGTGACAAAATTGCCAAAAGAGCTACAACTTTGCACTTCCATCGAGGATCTAAACATTGTTGGGTGCGCCTTAATTTGATACTAAATGTGCAAAATATGCATAGCTTGTCTCGTTTCTCTATAAATGGGTTGCACAAGTTTCCCCAAGGGATGGCTTATCTCACTAACTTGAAAGAAATTTATAATCATTGAATGCTCACAAGATTGTGACTTTACCCCTCTTATGCAACTTCCTTCACTTGTGAAGCTTCATTTTCCTCGACAACTCGACCATGTCATTGCCTTAAGATCTTTGTATATTAATGATTTTGATGGAATTGAAGTTTTACCAGAATGGTTGGGAACCTTACATCTTTAGAAGTTTTGGGACTTTACTATTGTAAAAATTTGAAACAGTTTCCTTCAACGAAAGCCATGCAGTGCCTCACCCAATTAATTCATTCATGTGGATGTCTTTGGATGTCCACACCTACCCGAGTTCACAAATCTTTTTGCCATTGA

mRNA sequence

ATGTTTGGATGTGGTAGTGAGGATGGTATTAGAAGCCTTAAAAAGCTACATATTTATGGATGTGATAATGAAGTGACAAAATTGCCAAAAGAGCTACAACTTTGCACTTCCATCGAGGATCTAAACATTAAATTTATAATCATTGAATGCTCACAAGATTGTGACTTTACCCCTCTTATGCAACTTCCTTCACTTGTGAAGCTTCATTTTCCTCGACAACTCGACCATGTCATTGCCTTAAGATCTTTTTTTACCAGAATGGTTGGGAACCTTACATCTTTAGAAGTTTTGGGACTTTACTATTGTAAAAATTTGAAACAGTTTCCTTCAACGAAAGCCATGCAGTGCCTCACCCAATTAATTCATTCATGTGGATGTCTTTGGATGTCCACACCTACCCGAGTTCACAAATCTTTTTGCCATTGA

Coding sequence (CDS)

ATGTTTGGATGTGGTAGTGAGGATGGTATTAGAAGCCTTAAAAAGCTACATATTTATGGATGTGATAATGAAGTGACAAAATTGCCAAAAGAGCTACAACTTTGCACTTCCATCGAGGATCTAAACATTAAATTTATAATCATTGAATGCTCACAAGATTGTGACTTTACCCCTCTTATGCAACTTCCTTCACTTGTGAAGCTTCATTTTCCTCGACAACTCGACCATGTCATTGCCTTAAGATCTTTTTTTACCAGAATGGTTGGGAACCTTACATCTTTAGAAGTTTTGGGACTTTACTATTGTAAAAATTTGAAACAGTTTCCTTCAACGAAAGCCATGCAGTGCCTCACCCAATTAATTCATTCATGTGGATGTCTTTGGATGTCCACACCTACCCGAGTTCACAAATCTTTTTGCCATTGA

Protein sequence

MFGCGSEDGIRSLKKLHIYGCDNEVTKLPKELQLCTSIEDLNIKFIIIECSQDCDFTPLMQLPSLVKLHFPRQLDHVIALRSFFTRMVGNLTSLEVLGLYYCKNLKQFPSTKAMQCLTQLIHSCGCLWMSTPTRVHKSFCH

Homology

[Close]

BLAST of Clc07G15705 vs. NCBI nr
Match: XP_031740228.1 (putative disease resistance protein RGA3 isoform X2 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 89/171 (52.05%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 11  RSLKKLHIYGCDNEVTKLPKELQLCTSIEDLNI--------------------------- 70
           R LKKLHIYGC +EVT LPK+LQLCTSIEDL I                           
Sbjct: 667 RPLKKLHIYGC-HEVTGLPKDLQLCTSIEDLKIVGCRKMTLNVQNMDSLSRFSMNGLQKF 726

Query: 71  -----------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALR 123
                      +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALR
Sbjct: 727 PQGLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGSVTEQLPQQLEHLIALR 786

[Close]

BLAST of Clc07G15705 vs. NCBI nr
Match: XP_004152283.3 (putative disease resistance protein RGA3 isoform X1 [Cucumis sativus] >KGN53113.2 hypothetical protein Csa_014548 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 89/171 (52.05%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 11   RSLKKLHIYGCDNEVTKLPKELQLCTSIEDLNI--------------------------- 70
            R LKKLHIYGC +EVT LPK+LQLCTSIEDL I                           
Sbjct: 865  RPLKKLHIYGC-HEVTGLPKDLQLCTSIEDLKIVGCRKMTLNVQNMDSLSRFSMNGLQKF 924

Query: 71   -----------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALR 123
                       +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALR
Sbjct: 925  PQGLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGSVTEQLPQQLEHLIALR 984

[Close]

BLAST of Clc07G15705 vs. NCBI nr
Match: XP_008453956.1 (PREDICTED: putative disease resistance protein RGA3 isoform X1 [Cucumis melo] >KAA0044619.1 putative disease resistance protein RGA3 isoform X1 [Cucumis melo var. makuwa] >TYK16970.1 putative disease resistance protein RGA3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 82/168 (48.81%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 13   LKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------------------- 72
            LKKLHIYGCD EVT+LPK+LQLCTSIEDL I                             
Sbjct: 868  LKKLHIYGCD-EVTRLPKDLQLCTSIEDLKIVGCLKLILNVQNMHGLSRFSINGLQKFPQ 927

Query: 73   ---------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALRSF 122
                     +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALRS 
Sbjct: 928  GLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGRATEQLPQQLEHLIALRSL 987

[Close]

BLAST of Clc07G15705 vs. NCBI nr
Match: XP_008453957.1 (PREDICTED: putative disease resistance protein RGA3 isoform X2 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 82/168 (48.81%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 13  LKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------------------- 72
           LKKLHIYGCD EVT+LPK+LQLCTSIEDL I                             
Sbjct: 687 LKKLHIYGCD-EVTRLPKDLQLCTSIEDLKIVGCLKLILNVQNMHGLSRFSINGLQKFPQ 746

Query: 73  ---------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALRSF 122
                    +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALRS 
Sbjct: 747 GLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGRATEQLPQQLEHLIALRSL 806

[Close]

BLAST of Clc07G15705 vs. NCBI nr
Match: XP_038881404.1 (putative disease resistance protein RGA3 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-15
Identity = 67/182 (36.81%), Postives = 82/182 (45.05%), Query Frame = 0


Query: 1    MFGCGSEDGIRSLKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------- 60
            +FG  +EDG++SL+ LHI+ CD   T LP  LQ C SIEDL I                 
Sbjct: 865  LFGFPNEDGVKSLRTLHIHKCDKLAT-LPYGLQFCNSIEDLRIDGCSSLTLNLKNMHKLS 924

Query: 61   ----------------------KFIIIECSQDCDFTPLMQLPSLVKL------------H 120
                                  +  II   QD DF  L+ LPSLVKL             
Sbjct: 925  VLFIDGLKALPQGLDQHLNNLKEMDIIGGIQDYDFNLLLNLPSLVKLRLTNYAEESAIKQ 984

Query: 121  FPRQLDHVIALRSF----------FTRMVGNLTSLEVLGLYYCKNLKQFPSTKAMQCLTQ 122
             P QL+ + +LR+               +GNLTSLE LGLYYC+NLK  PS  AM  LT+
Sbjct: 985  LPPQLERLTSLRTLTIGDFGDIEALPEWLGNLTSLETLGLYYCRNLKHLPSNTAMLRLTK 1044

[Close]

BLAST of Clc07G15705 vs. ExPASy TrEMBL
Match: A0A0A0KXG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 89/171 (52.05%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 11  RSLKKLHIYGCDNEVTKLPKELQLCTSIEDLNI--------------------------- 70
           R LKKLHIYGC +EVT LPK+LQLCTSIEDL I                           
Sbjct: 749 RPLKKLHIYGC-HEVTGLPKDLQLCTSIEDLKIVGCRKMTLNVQNMDSLSRFSMNGLQKF 808

Query: 71  -----------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALR 123
                      +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALR
Sbjct: 809 PQGLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGSVTEQLPQQLEHLIALR 868

[Close]

BLAST of Clc07G15705 vs. ExPASy TrEMBL
Match: A0A5D3D021 (Putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001110 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 82/168 (48.81%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 13   LKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------------------- 72
            LKKLHIYGCD EVT+LPK+LQLCTSIEDL I                             
Sbjct: 868  LKKLHIYGCD-EVTRLPKDLQLCTSIEDLKIVGCLKLILNVQNMHGLSRFSINGLQKFPQ 927

Query: 73   ---------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALRSF 122
                     +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALRS 
Sbjct: 928  GLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGRATEQLPQQLEHLIALRSL 987

[Close]

BLAST of Clc07G15705 vs. ExPASy TrEMBL
Match: A0A1S3BYA2 (putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494523 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 82/168 (48.81%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 13   LKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------------------- 72
            LKKLHIYGCD EVT+LPK+LQLCTSIEDL I                             
Sbjct: 868  LKKLHIYGCD-EVTRLPKDLQLCTSIEDLKIVGCLKLILNVQNMHGLSRFSINGLQKFPQ 927

Query: 73   ---------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALRSF 122
                     +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALRS 
Sbjct: 928  GLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGRATEQLPQQLEHLIALRSL 987

[Close]

BLAST of Clc07G15705 vs. ExPASy TrEMBL
Match: A0A1S3BYQ0 (putative disease resistance protein RGA3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494523 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 82/168 (48.81%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 13  LKKLHIYGCDNEVTKLPKELQLCTSIEDLNI----------------------------- 72
           LKKLHIYGCD EVT+LPK+LQLCTSIEDL I                             
Sbjct: 687 LKKLHIYGCD-EVTRLPKDLQLCTSIEDLKIVGCLKLILNVQNMHGLSRFSINGLQKFPQ 746

Query: 73  ---------KFIIIECSQDCDFTPLMQLPSLVKLH-----------FPRQLDHVIALRSF 122
                    +  IIECSQDCDF+PLMQL SLVKLH            P+QL+H+IALRS 
Sbjct: 747 GLANLKNLKEMTIIECSQDCDFSPLMQLSSLVKLHLVIFPGRATEQLPQQLEHLIALRSL 806

[Close]

BLAST of Clc07G15705 vs. ExPASy TrEMBL
Match: A0A0A0KU03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016440 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.4e-21
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 23  NEVTKLPKELQLCTSIEDLNIKFIIIECSQDCDFTPLMQLPSLVKL-----------HFP 82
           N + K P+ L    +++++    II ECSQDCDFTPLMQL SLV L             P
Sbjct: 2   NGLQKFPQGLSHLKNLKEM----IITECSQDCDFTPLMQLSSLVNLDLVLFAGNGAVQLP 61

Query: 83  RQLDHVIALRSF----------FTRMVGNLTSLEVLGLYYCKNLKQFPSTKAMQCLTQLI 141
           +QL H+ ALRS               +GNL SLEVLGLYYC++LKQFPS KA+  ++  I
Sbjct: 62  QQLQHLTALRSLIINDFDGIEVLPEWLGNLASLEVLGLYYCRSLKQFPSKKAI-AMSHPI 121

The following BLAST results are available for this feature:

BLAST of Clc07G15705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740228.1	2.5e-31	52.05	putative disease resistance protein RGA3 isoform X2 [Cucumis sativus]	[more]
XP_004152283.3	2.5e-31	52.05	putative disease resistance protein RGA3 isoform X1 [Cucumis sativus] >KGN53113....	[more]
XP_008453956.1	5.8e-28	48.81	PREDICTED: putative disease resistance protein RGA3 isoform X1 [Cucumis melo] >K...	[more]
XP_008453957.1	5.8e-28	48.81	PREDICTED: putative disease resistance protein RGA3 isoform X2 [Cucumis melo]	[more]
XP_038881404.1	9.5e-15	36.81	putative disease resistance protein RGA3 [Benincasa hispida]	[more]

BLAST of Clc07G15705 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G15705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG9	1.2e-31	52.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1	[more]
A0A5D3D021	2.8e-28	48.81	Putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BYA2	2.8e-28	48.81	putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3BYQ0	2.8e-28	48.81	putative disease resistance protein RGA3 isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0KU03	7.4e-21	46.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016440 PE=4 SV=1	[more]

BLAST of Clc07G15705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 3..134 e-value: 8.9E-12 score: 46.1
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 11..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G15705.1	Clc07G15705.1	mRNA