Clc07G15480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G15480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease
Location	ClcChr07: 30059001 .. 30062715 (+)
RNA-Seq Expression	Clc07G15480
Synteny	Clc07G15480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAACTCGAATTTGACGTAAACCTCCTTTAGTCATTTCCCCCCAAATTTGGTTAATCCATCCGGCGGACCCAAAGAGTCAGAACCAAAGGAGCTTCCATGGCGGGAACGACCTAAAAGAAGTGAACTCACAATCGAAGAAACACTCAAGTAAAGAGAGGAAGAGAGATTTTCTTCTAAACCGACGTAGCGACTAGCGAGTAGAAATCAGCAATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGTTTTCTATGTTCTTATTCGTTTCGTTCCATTTCGGCCTCTTTAATTCCGCTTTCGTCATCACATTTTGGGATAGGATTTTGAATACTCTTTTCTTTCTCAAATATTACTGCGTTTGATCTCAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGGTTTAGCTTCTTTGCAATTTTTTCTTTTAACTGTCGTTCATCATTTACCTATTTCGTTTACTTCTCTTCCAACTTTTGATGTTTTGCATTTAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAGTCAGTCTTTAGTGGTTTATATATTCTTTCATTTGCATAAATACTCTAATGCACTTTACCTATTGAATTCGACGGTATAGAGAATGTAACTTAGCTTTAGTCGATAATGGGTAAACTTTATATACATTTGTACATGTATTGATCTTATTAATTCACCACTACACCCAAAAACTCAAAAACTTAAGTTGATTGATTAAGATAAATTTAGTATTTTTTTTTAGTATTTCTTTTAACTAATGGGAGGTAAGCAAACCTATCTTCATTCAGAGATAGGATCTCAGCAAAAGACTGAAACATGAATAATGATGCTTTCCCTCCCCCTTCTATTTTTGTTAACTTGTGCACATCAAAGGGTGGGTGACTATGGCTTGGACTAAAGTATTTTTTATTTTCCACTTTATTGGTCAACAGAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTAACTCTCTCCCTGGTTTCTTCATTGGTTGATGAAAAGAAACTAAAATTTTTAAGGATAAAACTAACAAGAGAAGTCCAATGCTTGGCCTCTGGTAACTTCCGATTATCTTACGTCATGATTCTATTGATATCATTTAGAGAAGAGAGAGCATGTGGAATCTTGAACTTCATATGGTATCATTTCGCATGTTCTTTTGGGAGGGAAAAATATAAATTAAAAAAAGAAATCAAACTACAGATTATTTTCAATGCCTTTTTATTGTTAATTATAGATCTACACCCAACGTAAATGAACCAGTTTCATATCTTGATTACAGTAGCAGGGTGTGACACATTCTTTTTGAGGAAGATCTGTAAGAATTAAATTTTGGAAAATTTATATTCTTGATCTTTTCAGGTACATAAGCTAGAGGGAAAGACCATCCCCATGACGCATATCTCATCTTTCATTGCCTTAGATTAATCACTTCCATTTATTTTCAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTAATTCTAATGCTTCCCTTTAAGATATAGCATTCCAACTGTTTCGCACACTTAAATTCATCAATTTGACTTGTAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGGTCAATTTCATCCGCTAAATATTTTTTGCAGCATACTATAATCAGATTTTCATTGCACAGGGTGAAATCAATAATGCTTTTATGATTTAATCTATAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGTTAGTTTTTACTCTGCCTTGTAAGAACTGTAGTTCTTTGCAGAATTAGCTCATTAAGCCACATACAATTTCTTTAATGTTCTCCACAGTATAGAAAGGACAGGCTTTTGTTCTGATCTCTTTGCCTCATGATACCATTCTTCATGATGGACGTGGTGTAAATTCTCCTCTTATTTTTGTGATTATATCCTTGCATCTCTTATAGCACATTGGAATTGTTTTTGTAAATCATTTGACATGTTTTGTCATATTTTGTAATTTTATCTTATCAACGTAATGAGGATAATTAGTTCATTTAAAAAAAAAGATGGACGAATTGCATACTTTTCAAAAATATTTTCACAACAATCGAATTATCAGTAATTTATTTAAAAAGGCCAGACCACTGTGTTATTAAATATTGTTAAAGTATTCTTGTCCAAATTGTTAGTAGTCACAACATCCATATAGCACTAGGTATGTTGTGATAAATGCTTTATTTGGTGGTGGGGGGATTGATTTAATGAAAGCACACTTAAAAAATATGTTTGAAAATCATATGGAATTTAGTAATTAATGGTAGACAATTTTTTTTTTTTATTAATGTAGTGCACTCCTCATTTTTGCTGGAACATCATCCTGCTCTGGTGCTTTGGGATGTTCAGTTCTTTCCCATTCTAAATTTTAACTTGATTTGTTCATTGGAAATGAATGGTTGTACCTTTATTCTTGTCTATAGTTGGTTTAGTGCATCCCAATTTTATTGTACAATAGTTGGACTTGCAAACAGTTTGGGTTCGTTCCTCATGTCTACTTCTTGATACACTTAAGTTCATTTGGTTGTGGTCAGGTTTACTTACATTTTGACTAATCTCATGGGACAATTGTCTCTTTTTAAACATTTGGTTGTCAATAAACTCTCAAGATTGTAGTATTCTAAGTAGGTGGCCAACCTAGGATGGTTACACCTAGTTTCTTCTCATCAATTTCCTTCTCATAAATCATCAAATTTCATAATCTGATTTATTTGTTTCCCTGTGAGCTGAAAATTAGATGCCAAAACTTCTGATACTTCCCTGACACTGTCTCGCAAACTAGAAGTGTCACAGATTTATATTTGACTTTGTTATCAAGTTCTTTATATTATATTCAGTGATATCATATATATTATTTTTATGCTTGATTTACAGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGAATGTTTGATTACATTCTATGTTCCAACCATCCTCCACTTGATTAATTAAGTAGCTGATAAGCAATAGTTTTGGTGTGTACTAACCGGGTGTTCTGCTTAGAAAACATATTTTAGATGGTAACTGCCATGTACTTGACTTTCTTTAAAGGTATT

mRNA sequence

GAGAAACTCGAATTTGACGTAAACCTCCTTTAGTCATTTCCCCCCAAATTTGGTTAATCCATCCGGCGGACCCAAAGAGTCAGAACCAAAGGAGCTTCCATGGCGGGAACGACCTAAAAGAAGTGAACTCACAATCGAAGAAACACTCAAGTAAAGAGAGGAAGAGAGATTTTCTTCTAAACCGACGTAGCGACTAGCGAGTAGAAATCAGCAATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGGTTTAGCTTCTTTGCAATTTTTTCTTTTAACTGTCGTTCATCATTTACCTATTTCGTTTACTTCTCTTCCAACTTTTGATGTTTTGCATTTAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGAATGTTTGATTACATTCTATGTTCCAACCATCCTCCACTTGATTAATTAAGTAGCTGATAAGCAATAGTTTTGGTGTGTACTAACCGGGTGTTCTGCTTAGAAAACATATTTTAGATGGTAACTGCCATGTACTTGACTTTCTTTAAAGGTATT

Coding sequence (CDS)

ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGGTTTAGCTTCTTTGCAATTTTTTCTTTTAACTGTCGTTCATCATTTACCTATTTCGTTTACTTCTCTTCCAACTTTTGATGTTTTGCATTTAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA

Protein sequence

MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF

Homology

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BLAST of Clc07G15480 vs. NCBI nr
Match: XP_038902264.1 (ribonuclease H2 subunit A [Benincasa hispida])

HSP 1 Score: 572.4 bits (1474), Expect = 2.5e-159
Identity = 288/328 (87.80%), Postives = 294/328 (89.63%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQYP+PKWASKPCVMGIDEAGRGPVLGPMVYGCLYCA+SYLKELSSLNFA        
Sbjct: 1   MSSQYPVPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLG+GVLLTEVYVDTVGDPEKYRIKLSEKFP+VKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGIGVLLTEVYVDTVGDPEKYRIKLSEKFPSVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLS+VGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATTGSGKKQLRLSSVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. NCBI nr
Match: XP_023527419.1 (ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 567.4 bits (1461), Expect = 8.1e-158
Identity = 287/328 (87.50%), Postives = 289/328 (88.11%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFE LKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEGLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. NCBI nr
Match: XP_022979887.1 (ribonuclease H2 subunit A [Cucurbita maxima])

HSP 1 Score: 564.7 bits (1454), Expect = 5.2e-157
Identity = 285/328 (86.89%), Postives = 289/328 (88.11%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFE LKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEGLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           V+KKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VSKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFP+LVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPSLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. NCBI nr
Match: XP_022955431.1 (ribonuclease H2 subunit A [Cucurbita moschata])

HSP 1 Score: 563.9 bits (1452), Expect = 8.9e-157
Identity = 285/328 (86.89%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSK LKEEKREELFE LK NESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKALKEEKREELFEGLKTNESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. NCBI nr
Match: KAG6582048.1 (Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 562.8 bits (1449), Expect = 2.0e-156
Identity = 285/328 (86.89%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFE LK NESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEGLKTNESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLT F
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTQF 297

[Close]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot
Match: Q9SEZ6 (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 431.4 bits (1108), Expect = 9.1e-120
Identity = 212/328 (64.63%), Postives = 256/328 (78.05%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           M S+   P+WAS+PC+MGIDEAGRGPVLGPMVYGC+YC  SY   L+SL+FA        
Sbjct: 1   MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREEL+E LK ++S+GWAVDVIDPRELS+
Sbjct: 61  -----------------------DSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSA 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KML K K NLNEISH+SAMGL+ +VL MGVLLTE Y+DTVGDP+KYRIKLSE+FP++KFV
Sbjct: 121 KMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           V+KKADSL+P+VSGASIVAKVTRDRAL+EW +EET E+++RNFGSGYPGDP TK WL  H
Sbjct: 181 VSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFP+LVRFSWGTCT++ K  VEV WE+D+ +E+ G   S K+Q +LS+ G  T +
Sbjct: 241 KHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCE 296

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           ++SEEIES+ KGRCKF QARK++QLT F
Sbjct: 301 KRSEEIESSGKGRCKFLQARKIQQLTQF 296

[Close]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot
Match: O75792 (Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 3.9e-62
Identity = 133/323 (41.18%), Postives = 183/323 (56.66%), Query Frame = 0


Query: 6   PLPKWASK-PCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTV 65
           P+P    K PCV+G+DEAGRGPVLGPMVY   YC    L +L +L  A            
Sbjct: 19  PVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVA------------ 78

Query: 66  VHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLN 125
                              DSKTL E +RE LF  ++  + +GWA+DV+ P  +S+ ML 
Sbjct: 79  -------------------DSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLG 138

Query: 126 KVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKK 185
           +VK NLN +SHD+A GL+   L  GV +T+V+VDTVG PE Y+ +L + FP ++  V  K
Sbjct: 139 RVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAK 198

Query: 186 ADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSV 245
           AD+LYPVVS ASI AKV RD+A+++W   E  +++  ++GSGYP DP TK WL++H   V
Sbjct: 199 ADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPV 258

Query: 246 FGFPTLVRFSWGTC-TSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKS 305
           FGFP  VRFSW T  T   K+  +V+WE         +A   ++ LR       TS   +
Sbjct: 259 FGFPQFVRFSWRTAQTILEKEAEDVIWED--------SASENQEGLRK-----ITSYFLN 297

Query: 306 EEIESNAKGRCKFFQARKLEQLT 327
           E  ++  +   ++F  R LE  T
Sbjct: 319 EGSQARPRSSHRYFLERGLESAT 297

[Close]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot
Match: Q9CWY8 (Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 3.9e-62
Identity = 123/276 (44.57%), Postives = 165/276 (59.78%), Query Frame = 0


Query: 6   PLPKWASK-PCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTV 65
           P+P    K PCV+G+DEAGRGPVLGPMVY   YC  S L +L +L  A            
Sbjct: 19  PVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVA------------ 78

Query: 66  VHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKAN-ESIGWAVDVIDPRELSSKML 125
                              DSKTL E +RE LF  ++ + + +GWA+DV+ P  +S+ ML
Sbjct: 79  -------------------DSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSML 138

Query: 126 NKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAK 185
            +VK NLN +SHD+A GL+   L   V +T+V+VDTVG PE Y+ +L + FP ++  V  
Sbjct: 139 GRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKA 198

Query: 186 KADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHS 245
           KADSL+PVVS ASI AKV RD+A++ W   E  +++  ++GSGYP DP TK WL  H   
Sbjct: 199 KADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDP 258

Query: 246 VFGFPTLVRFSWGTCTSYF-KDVVEVLWESDKVDED 279
           VFGFP  VRFSW T  +   K+  +V+WE  + +ED
Sbjct: 259 VFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED 263

[Close]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot
Match: Q5U209 (Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.6e-62
Identity = 121/276 (43.84%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 6   PLPKWASK-PCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFFLLTV 65
           P+P    K PCV+G+DEAGRGPVLGPMVY   YC  S L +L +L  A            
Sbjct: 19  PVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVA------------ 78

Query: 66  VHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKAN-ESIGWAVDVIDPRELSSKML 125
                              DSKTL E +RE LF  ++ + + +GWA+D++ P  +S+ ML
Sbjct: 79  -------------------DSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSML 138

Query: 126 NKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAK 185
            +VK NLN +SHD+A GL+   +   V +T+V+VDTVG PE Y+ +L ++FP ++  V  
Sbjct: 139 GRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKA 198

Query: 186 KADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHS 245
           KADSL+PVVS ASI+AKV RD+A++ W   E+ + +  ++GSGYP DP TK WL  H   
Sbjct: 199 KADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDP 258

Query: 246 VFGFPTLVRFSWGTCTSYF-KDVVEVLWESDKVDED 279
           VFGFP  VRFSW T  +   K+   V WE    +ED
Sbjct: 259 VFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263

[Close]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot
Match: Q2TBT5 (Ribonuclease H2 subunit A OS=Bos taurus OX=9913 GN=RNASEH2A PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.6e-60
Identity = 136/328 (41.46%), Postives = 181/328 (55.18%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           +SS  P P    +PCV+G+DEAGRGPVLGPMVY   YC  S L++L +L  A        
Sbjct: 16  LSSPVP-PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVA-------- 75

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKAN-ESIGWAVDVIDPRELS 120
                                  DSKTL E +R+ LF  ++ + + +GWA+DV+ P  +S
Sbjct: 76  -----------------------DSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLIS 135

Query: 121 SKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKF 180
           + ML +VK NLN +SHD+A GLV   L  GV + +V+VDTVG PE Y+ +L ++FP ++ 
Sbjct: 136 TSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEV 195

Query: 181 VVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLED 240
            V  KAD+LYPVVS ASI AKV RD+A++ W   E  +++  ++GSGYP DP TK WL  
Sbjct: 196 TVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRK 255

Query: 241 HKHSVFGFPTLVRFSWGTCTSYFKDVVE-VLWESDKVDEDGGTAGSGKKQLRLSNVGITT 300
           H   VFGFP  VRFSW T  S  +   E V WE     E G   G GK            
Sbjct: 256 HVDPVFGFPQFVRFSWRTAQSILESEAEDVKWED---SETGDPKGPGK-----------I 297

Query: 301 SKRKSEEIESNAKGRCKFFQARKLEQLT 327
               SE  ++  +   ++FQ R LE  T
Sbjct: 316 KSYFSESPQTCLRLPHRYFQERGLESAT 297

[Close]

BLAST of Clc07G15480 vs. ExPASy TrEMBL
Match: A0A6J1IPY0 (Ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111479443 PE=3 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.5e-157
Identity = 285/328 (86.89%), Postives = 289/328 (88.11%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFE LKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEGLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           V+KKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VSKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFP+LVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPSLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. ExPASy TrEMBL
Match: A0A6J1GTR5 (Ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111457459 PE=3 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 4.3e-157
Identity = 285/328 (86.89%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ PLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYC  SYLKELSSLNFA        
Sbjct: 1   MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSK LKEEKREELFE LK NESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKALKEEKREELFEGLKTNESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDR LR+WALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKD+VEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQLTHF
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 297

[Close]

BLAST of Clc07G15480 vs. ExPASy TrEMBL
Match: A0A5A7TT92 (Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 PE=3 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 6.2e-156
Identity = 285/328 (86.89%), Postives = 288/328 (87.80%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MS Q  LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCA+SYLKELSSLNFA        
Sbjct: 1   MSLQDSLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISH SAMGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFV
Sbjct: 121 KMLNKVKINLNEISHGSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKDVVEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQL+ F
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLSRF 297

[Close]

BLAST of Clc07G15480 vs. ExPASy TrEMBL
Match: A0A1S3BXP1 (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 6.2e-156
Identity = 285/328 (86.89%), Postives = 288/328 (87.80%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MS Q  LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCA+SYLKELSSLNFA        
Sbjct: 1   MSLQDSLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISH SAMGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFV
Sbjct: 121 KMLNKVKINLNEISHGSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKDVVEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIESNAKGRCKFFQARKLEQL+ F
Sbjct: 301 RKSEEIESNAKGRCKFFQARKLEQLSRF 297

[Close]

BLAST of Clc07G15480 vs. ExPASy TrEMBL
Match: A0A0A0KTZ4 (Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.4e-155
Identity = 283/328 (86.28%), Postives = 288/328 (87.80%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           MSSQ  LPKW SKPCVMGIDEAGRGPVLGPMVYGCLYCA+SYLK+LSSLNFA        
Sbjct: 1   MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS
Sbjct: 61  -----------------------DSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KMLNKVKINLNEISHDSAMGLVTKVL MGVLLTEVYVDTVGDPEKYRIKLSEKFPN+KFV
Sbjct: 121 KMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEKFPNIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH
Sbjct: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFPTLVRFSWGTCTSYFKDVVEV WESDKVDEDG T GSGKKQLRLSNVGITTSK
Sbjct: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSNVGITTSK 297

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           RKSEEIES+ KGRCKFFQARKLEQL+ F
Sbjct: 301 RKSEEIESSGKGRCKFFQARKLEQLSRF 297

[Close]

BLAST of Clc07G15480 vs. TAIR 10
Match: AT2G25100.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 431.4 bits (1108), Expect = 6.5e-121
Identity = 212/328 (64.63%), Postives = 256/328 (78.05%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           M S+   P+WAS+PC+MGIDEAGRGPVLGPMVYGC+YC  SY   L+SL+FA        
Sbjct: 1   MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREEL+E LK ++S+GWAVDVIDPRELS+
Sbjct: 61  -----------------------DSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSA 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KML K K NLNEISH+SAMGL+ +VL MGVLLTE Y+DTVGDP+KYRIKLSE+FP++KFV
Sbjct: 121 KMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           V+KKADSL+P+VSGASIVAKVTRDRAL+EW +EET E+++RNFGSGYPGDP TK WL  H
Sbjct: 181 VSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFP+LVRFSWGTCT++ K  VEV WE+D+ +E+ G   S K+Q +LS+ G  T +
Sbjct: 241 KHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCE 296

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           ++SEEIES+ KGRCKF QARK++QLT F
Sbjct: 301 KRSEEIESSGKGRCKFLQARKIQQLTQF 296

[Close]

BLAST of Clc07G15480 vs. TAIR 10
Match: AT2G25100.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 395.6 bits (1015), Expect = 3.9e-110
Identity = 199/328 (60.67%), Postives = 240/328 (73.17%), Query Frame = 0


Query: 1   MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFAGLASLQFF 60
           M S+   P+WAS+PC+MGIDEAGRGPVLGPMVYGC+YC  SY   L+SL+FA        
Sbjct: 1   MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA-------- 60

Query: 61  LLTVVHHLPISFTSLPTFDVLHLDSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSS 120
                                  DSKTLKEEKREEL+E LK ++S+GWAVDVIDPRELS+
Sbjct: 61  -----------------------DSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSA 120

Query: 121 KMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFV 180
           KML                    KVL MGVLLTE Y+DTVGDP+KYRIKLSE+FP++KFV
Sbjct: 121 KML-------------------AKVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFV 180

Query: 181 VAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDH 240
           V+KKADSL+P+VSGASIVAKVTRDRAL+EW +EET E+++RNFGSGYPGDP TK WL  H
Sbjct: 181 VSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQH 240

Query: 241 KHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSK 300
           KHSVFGFP+LVRFSWGTCT++ K  VEV WE+D+ +E+ G   S K+Q +LS+ G  T +
Sbjct: 241 KHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSSKRQAKLSSFGFKTCE 277

Query: 301 RKSEEIESNAKGRCKFFQARKLEQLTHF 329
           ++SEEIES+ KGRCKF QARK++QLT F
Sbjct: 301 KRSEEIESSGKGRCKFLQARKIQQLTQF 277

The following BLAST results are available for this feature:

BLAST of Clc07G15480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902264.1	2.5e-159	87.80	ribonuclease H2 subunit A [Benincasa hispida]	[more]
XP_023527419.1	8.1e-158	87.50	ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo]	[more]
XP_022979887.1	5.2e-157	86.89	ribonuclease H2 subunit A [Cucurbita maxima]	[more]
XP_022955431.1	8.9e-157	86.89	ribonuclease H2 subunit A [Cucurbita moschata]	[more]
KAG6582048.1	2.0e-156	86.89	Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc07G15480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEZ6	9.1e-120	64.63	Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2	[more]
O75792	3.9e-62	41.18	Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2	[more]
Q9CWY8	3.9e-62	44.57	Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2	[more]
Q5U209	8.6e-62	43.84	Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1	[more]
Q2TBT5	1.6e-60	41.46	Ribonuclease H2 subunit A OS=Bos taurus OX=9913 GN=RNASEH2A PE=1 SV=1	[more]

BLAST of Clc07G15480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPY0	2.5e-157	86.89	Ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111479443 PE=3 SV=1	[more]
A0A6J1GTR5	4.3e-157	86.89	Ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111457459 PE=3 SV=1	[more]
A0A5A7TT92	6.2e-156	86.89	Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 ...	[more]
A0A1S3BXP1	6.2e-156	86.89	Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1	[more]
A0A0A0KTZ4	1.4e-155	86.28	Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1	[more]

BLAST of Clc07G15480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25100.1	6.5e-121	64.63	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G25100.2	3.9e-110	60.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023160	Ribonuclease HII, helix-loop-helix cap domain superfamily	GENE3D	1.10.10.460	Ribonuclease hii. Domain 2	coord: 218..265 e-value: 8.1E-20 score: 72.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..217 e-value: 9.7E-64 score: 216.7
IPR004649	Ribonuclease H2, subunit A	TIGRFAM	TIGR00729	TIGR00729	coord: 83..259 e-value: 8.8E-39 score: 131.7
IPR024567	Ribonuclease HII/HIII domain	PFAM	PF01351	RNase_HII	coord: 84..258 e-value: 1.4E-34 score: 119.7 coord: 17..51 e-value: 6.9E-9 score: 35.8
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 83..327
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 7..54
None	No IPR available	PANTHER	PTHR10954:SF19	RIBONUCLEASE	coord: 83..327
None	No IPR available	PANTHER	PTHR10954:SF19	RIBONUCLEASE	coord: 7..54
None	No IPR available	CDD	cd07181	RNase_HII_eukaryota_like	coord: 17..264 e-value: 8.14223E-135 score: 379.941
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G15480.2	Clc07G15480.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0006298	mismatch repair
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0032299	ribonuclease H2 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding