Clc07G14250 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTGTCTCTTAATAAAGAAAATATATTTATATGGTAGGCCATATGAATATATATGATCTAATAATAATGTATATTATCTTAATATTAATACAAACAACTGCAATGCACAAGAGCCTAAATTCTAGTTCATCAGCCTCTCCAAACACATCTCTCTCTATTTCTTCTCCCTTTCTATCCATCTTTTCACACACTAGTAGCACAAAAACTCAATTATGGCTCAAAGCAATGAGCAGGAGGAAGGGCAGTCAGCGGCGGGATCGCGGTCGGGGATGCGTCGGGGGATTCAGTTTCGGAGGCGACGAATGCCGGTGGCACGACTCGGGGGGAAGAGATCGGGGCGGATCGTGGCATGGGGGAGGATGCTGAGGAAGATAAGACTGAGATGGGTGAAATTGAAATGCATGGCCATGGTGAAGAAGATTAAAAAATACTATACAAAGTTGATGAAGGATATAGTGGAAGGAGGAGTATATGGCTATCCTGACTCATATCAACATAGGCTTCTCTTGGAGACTTCTTTTGCAATTCCAATCCTGGGTGTCTCTCTCTCTACTCATTCCAGTATTCTTGCCACAACTTCTTAAATATCTACCTTTTAATTATCTCAATCTTATTGTTCATTAATTAGGCTCTATTATTAGTTTTTTTATTTTGGAAAATTGCAATTTCATATTGTGGTATCCACTTTTTTAGTAAACATTTCGGGGTGTTCCGGCCCGACTTCTAGTAGGTGGAGTAGGCTATTATAGCCCACCCCATGTTTGGAGCTCCAATCATAATGGTTGGTATTTCCAACTATTATAACTTATAATTAACTACATTATTACTATTTCAAATCCTTCTTTTGTTACTGTATTTAA GCTGTCTCTTAATAAAGAAAATATATTTATATGGTAGGCCATATGAATATATATGATCTAATAATAATGTATATTATCTTAATATTAATACAAACAACTGCAATGCACAAGAGCCTAAATTCTAGTTCATCAGCCTCTCCAAACACATCTCTCTCTATTTCTTCTCCCTTTCTATCCATCTTTTCACACACTAGTAGCACAAAAACTCAATTATGGCTCAAAGCAATGAGCAGGAGGAAGGGCAGTCAGCGGCGGGATCGCGGTCGGGGATGCGTCGGGGGATTCAGTTTCGGAGGCGACGAATGCCGGTGGCACGACTCGGGGGGAAGAGATCGGGGCGGATCGTGGCATGGGGGAGGATGCTGAGGAAGATAAGACTGAGATGGGTGAAATTGAAATGCATGGCCATGGTGAAGAAGATTAAAAAATACTATACAAAGTTGATGAAGGATATAGTGGAAGGAGGAGTATATGGCTATCCTGACTCATATCAACATAGGCTTCTCTTGGAGACTTCTTTTGCAATTCCAATCCTGGGTGTCTCTCTCTCTACTCATTCCAGTATTCTTGCCACAACTTCTTAAATATCTACCTTTTAATTATCTCAATCTTATTGTTCATTAATTAGGCTCTATTATTAGTTTTTTTATTTTGGAAAATTGCAATTTCATATTGTGGTATCCACTTTTTTAGTAAACATTTCGGGGTGTTCCGGCCCGACTTCTAGTAGGTGGAGTAGGCTATTATAGCCCACCCCATGTTTGGAGCTCCAATCATAATGGTTGGTATTTCCAACTATTATAACTTATAATTAACTACATTATTACTATTTCAAATCCTTCTTTTGTTACTGTATTTAA ATGGCTCAAAGCAATGAGCAGGAGGAAGGGCAGTCAGCGGCGGGATCGCGGTCGGGGATGCGTCGGGGGATTCAGTTTCGGAGGCGACGAATGCCGGTGGCACGACTCGGGGGGAAGAGATCGGGGCGGATCGTGGCATGGGGGAGGATGCTGAGGAAGATAAGACTGAGATGGGTGAAATTGAAATGCATGGCCATGGTGAAGAAGATTAAAAAATACTATACAAAGTTGATGAAGGATATAGTGGAAGGAGGAGTATATGGCTATCCTGACTCATATCAACATAGGCTTCTCTTGGAGACTTCTTTTGCAATTCCAATCCTGGGTGTCTCTCTCTCTACTCATTCCAGTATTCTTGCCACAACTTCTTAA MAQSNEQEEGQSAAGSRSGMRRGIQFRRRRMPVARLGGKRSGRIVAWGRMLRKIRLRWVKLKCMAMVKKIKKYYTKLMKDIVEGGVYGYPDSYQHRLLLETSFAIPILGVSLSTHSSILATTS Homology
BLAST of Clc07G14250 vs. NCBI nr
Match: XP_038891072.1 (uncharacterized protein LOC120080455 [Benincasa hispida]) HSP 1 Score: 204.1 bits (518), Expect = 6.7e-49 Identity = 111/124 (89.52%), Postives = 115/124 (92.74%), Query Frame = 0
BLAST of Clc07G14250 vs. NCBI nr
Match: KAG6581768.1 (hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 182.6 bits (462), Expect = 2.1e-42 Identity = 97/123 (78.86%), Postives = 108/123 (87.80%), Query Frame = 0
BLAST of Clc07G14250 vs. NCBI nr
Match: XP_022956317.1 (uncharacterized protein LOC111458050 [Cucurbita moschata]) HSP 1 Score: 177.9 bits (450), Expect = 5.2e-41 Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0
BLAST of Clc07G14250 vs. NCBI nr
Match: KAG7018218.1 (hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 175.6 bits (444), Expect = 2.6e-40 Identity = 95/123 (77.24%), Postives = 107/123 (86.99%), Query Frame = 0
BLAST of Clc07G14250 vs. NCBI nr
Match: XP_022948735.1 (uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 uncharacterized protein LOC111787905 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 167.5 bits (423), Expect = 7.0e-38 Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0
BLAST of Clc07G14250 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 2.5e-41 Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0
BLAST of Clc07G14250 vs. ExPASy TrEMBL
Match: A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38 Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0
BLAST of Clc07G14250 vs. ExPASy TrEMBL
Match: A0A5D3DCV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45855G00010 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 2.4e-36 Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = 0
BLAST of Clc07G14250 vs. ExPASy TrEMBL
Match: A0A0A0LBW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 9.2e-36 Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 0
BLAST of Clc07G14250 vs. ExPASy TrEMBL
Match: A0A6J1D3L4 (uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016963 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24 Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0
BLAST of Clc07G14250 vs. TAIR 10
Match: AT1G54120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0
BLAST of Clc07G14250 vs. TAIR 10
Match: AT3G14060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07 Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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