Clc07G14200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G14200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	U6 snRNA-associated Sm-like protein LSm1
Location	ClcChr07: 28864561 .. 28865468 (-)
RNA-Seq Expression	Clc07G14200
Synteny	Clc07G14200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCGCCAATTCTCTCCCAAGGCATCTTCTATCTTGGCGATTATCTTGACCGTACTTACATTCTCTCTCTCTCTCTCTCTCTGATTTCAAAATTCTTGCTTTTCTTTCTTTCTTCGTCTTCTAATTTATTCCCATGCTACAGGCAAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGTATTTCTTTCATTCATTCATTCATTATATATATTCCTATTATGCAAATTCTCATCAGAATTTTTAAAAATTTGTGCAGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGTAATCTCATTTTCTTTTTCCTTAATTTAATTTAATTTAATTTAATTAATTAATTTCTAACTCCAAATTCCTTCAATTTCAATTCTTAATTTCAGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGTAAGTAACTATCTACCTCTTCTGACCCTGTGTCAAATCCAACACAGAATCTCCTCCTCTAATACACAAACTTAACCCCGAGTTTGATAGTTTTTTTTTTTTTTGTCTATTTTTGGACATGGAGATTCACATGTCTACTTACGAAAGATTTTAAAACCATTCGAAAGAATGAGCTTTGGAAGACAGTTCTGATTGTAACAAAATTTTGAACCTTACATTTGAGCAATTCTAAAAGACTGGCTGGGGATGAATGCAGGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

mRNA sequence

ATGGTTTCGCCAATTCTCTCCCAAGGCATCTTCTATCTTGGCGATTATCTTGACCGCAAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

Coding sequence (CDS)

ATGGTTTCGCCAATTCTCTCCCAAGGCATCTTCTATCTTGGCGATTATCTTGACCGCAAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

Protein sequence

MVSPILSQGIFYLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEEDM

Homology

[Close]

BLAST of Clc07G14200 vs. NCBI nr
Match: XP_023527037.1 (sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-39
Identity = 85/128 (66.41%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
           M+ P + + IF    +G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V EN
Sbjct: 1   MMVPSVPEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQHGNFVVESAFERIVAEN 60

Query: 61  QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
           QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES  LKRTLK
Sbjct: 61  QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLK 120

Query: 121 KWMEDLLE 126
           KWME+LL+
Sbjct: 121 KWMEELLD 128

[Close]

BLAST of Clc07G14200 vs. NCBI nr
Match: XP_022980750.1 (sm-like protein LSM1B [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 1   MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
           M+ P + + IF    +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER   EN
Sbjct: 15  MMVPSVLEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAEN 74

Query: 61  QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
           QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE +S V KRTLK
Sbjct: 75  QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLK 134

Query: 121 KWMEDLLE 126
           KWME+L +
Sbjct: 135 KWMEELFD 142

[Close]

BLAST of Clc07G14200 vs. NCBI nr
Match: XP_022955856.1 (sm-like protein LSM1B [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           +G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +
Sbjct: 15  IGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPMGLLVVRGD 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE 126
           N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES  LKRTLKKWME+LL+
Sbjct: 75  NAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELLD 127

[Close]

BLAST of Clc07G14200 vs. NCBI nr
Match: XP_038894529.1 (sm-like protein LSM1B [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 37  SFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSL 96
           SFD +G+IVLESAFER +VEN+YCDNPIGLLVVRAENIILIGE D SLPQLPPHMT VSL
Sbjct: 3   SFDQFGTIVLESAFERIIVENEYCDNPIGLLVVRAENIILIGEPDPSLPQLPPHMTVVSL 62

Query: 97  PQILTARKAERESLVLKRTLKKWMEDLLEE 127
           PQILTARKAERES+ L+RTLKKWME+LLE+
Sbjct: 63  PQILTARKAERESVELQRTLKKWMEELLED 92

[Close]

BLAST of Clc07G14200 vs. NCBI nr
Match: XP_023527036.1 (sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 42  GSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILT 101
           G+ V+ESAFER V ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL 
Sbjct: 46  GNFVVESAFERIVAENQYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILI 105

Query: 102 ARKAERESLVLKRTLKKWMEDLLE 126
           ARKAE ES  LKRTLKKWME+LL+
Sbjct: 106 ARKAELESSALKRTLKKWMEELLD 129

[Close]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot
Match: Q8LFL8 (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-25
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLDRKLLVL  D R  +GT  SFD + + VLE A ER +V  QYCD P+GL V+R E
Sbjct: 15  LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELD    +LPPHM  VS  +I  A+K ERE+  L+ T++K ME L
Sbjct: 75  NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot
Match: Q945P8 (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLD+KLLVL  D R  +G   SFD + + VLE A+ER +V + YCD P+GL ++R E
Sbjct: 15  LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELD+   +LP HM  V   +I  A+KAE+E ++LK T++K ME L
Sbjct: 75  NVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot
Match: Q5E9Z8 (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 17  LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIIL 76
           +D+K LVL  D R  IG   S D + ++VL    ER  V  +Y D P G+ VVR EN++L
Sbjct: 14  IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73

Query: 77  IGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 118
           +GE+DL      P +  VS+ +IL  ++ E+++ +    LK
Sbjct: 74  LGEIDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113

[Close]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot
Match: Q54W83 (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           LGD +D+KL+V+  D R FIG   +FD + +IVL+   ER  V + Y D  +GL  +R +
Sbjct: 5   LGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGD 64

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKK 119
           N++++GE+D         +  +S  +I  A   E+     +  LK+
Sbjct: 65  NVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKR 110

[Close]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot
Match: O15116 (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 17  LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIIL 76
           +D+K LVL  D R  IG   S D + ++VL    ER  V  +Y D P G+ VVR EN++L
Sbjct: 14  IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73

Query: 77  IGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 118
           +GE+DL      P +  VS+ +IL  ++ E+++ +    LK
Sbjct: 74  LGEIDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113

[Close]

BLAST of Clc07G14200 vs. ExPASy TrEMBL
Match: A0A6J1IXE4 (sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.4e-39
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 1   MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
           M+ P + + IF    +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER   EN
Sbjct: 15  MMVPSVLEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAEN 74

Query: 61  QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
           QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE +S V KRTLK
Sbjct: 75  QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLK 134

Query: 121 KWMEDLLE 126
           KWME+L +
Sbjct: 135 KWMEELFD 142

[Close]

BLAST of Clc07G14200 vs. ExPASy TrEMBL
Match: A0A6J1GV01 (sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.1e-39
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           +G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +
Sbjct: 15  IGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPMGLLVVRGD 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE 126
           N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES  LKRTLKKWME+LL+
Sbjct: 75  NAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELLD 127

[Close]

BLAST of Clc07G14200 vs. ExPASy TrEMBL
Match: A0A022Q0J9 (U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLD+KLLVL  D R  +G   SFD + + VLE A ER +V   YCD P+GL V+R E
Sbjct: 15  LASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEED 128
           N++LIGELDL   +LPPHMT VS  +I  A+KAERE+  LK T+KKWM D L+ D
Sbjct: 75  NVVLIGELDLEKDELPPHMTRVSAEEIKRAQKAEREASELKGTMKKWM-DFLDMD 128

[Close]

BLAST of Clc07G14200 vs. ExPASy TrEMBL
Match: V4SS25 (U6 snRNA-associated Sm-like protein LSm1 OS=Citrus clementina OX=85681 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLD+KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R E
Sbjct: 15  LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 75  NVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. ExPASy TrEMBL
Match: A0A2H5NE06 (U6 snRNA-associated Sm-like protein LSm1 OS=Citrus unshiu OX=55188 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLD+KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R E
Sbjct: 15  LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 75  NVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLDRKLLVL  D R  +GT  SFD + + VLE A ER +V  QYCD P+GL V+R E
Sbjct: 15  LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELD    +LPPHM  VS  +I  A+K ERE+  L+ T++K ME L
Sbjct: 75  NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLDRKLLVL  D R  +GT  SFD + + VLE A ER +V  QYCD P+GL V+R E
Sbjct: 15  LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELD    +LPPHM  VS  +I  A+K ERE+  L+ T++K ME L
Sbjct: 75  NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125

[Close]

BLAST of Clc07G14200 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.8e-25
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 13  LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
           L  YLD+KLLVL  D R  +G   SFD + + VLE A+ER +V + YCD P+GL ++R E
Sbjct: 15  LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74

Query: 73  NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
           N++LIGELD+   +LP HM  V   +I  A+KAE+E ++LK T++K ME L
Sbjct: 75  NVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125

The following BLAST results are available for this feature:

BLAST of Clc07G14200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527037.1	3.0e-39	66.41	sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022980750.1	1.1e-38	64.84	sm-like protein LSM1B [Cucurbita maxima]	[more]
XP_022955856.1	1.5e-38	70.80	sm-like protein LSM1B [Cucurbita moschata]	[more]
XP_038894529.1	3.2e-33	84.44	sm-like protein LSM1B [Benincasa hispida]	[more]
XP_023527036.1	4.9e-26	73.81	sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc07G14200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL8	5.6e-25	54.05	Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1	[more]
Q945P8	1.4e-23	49.55	Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1	[more]
Q5E9Z8	1.8e-10	37.62	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1	[more]
Q54W83	1.8e-10	33.02	Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX...	[more]
O15116	1.8e-10	37.62	U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV...	[more]

BLAST of Clc07G14200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IXE4	5.4e-39	64.84	sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1	[more]
A0A6J1GV01	7.1e-39	70.80	sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1	[more]
A0A022Q0J9	1.3e-24	55.65	U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 ...	[more]
V4SS25	2.2e-24	54.95	U6 snRNA-associated Sm-like protein LSm1 OS=Citrus clementina OX=85681 GN=LSM1 P...	[more]
A0A2H5NE06	2.2e-24	54.95	U6 snRNA-associated Sm-like protein LSm1 OS=Citrus unshiu OX=55188 GN=LSM1 PE=3 ...	[more]

BLAST of Clc07G14200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14080.1	4.0e-26	54.05	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	4.0e-26	54.05	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	9.8e-25	49.55	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 11..79 e-value: 1.4E-6 score: 37.9
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 13..78 e-value: 1.2E-9 score: 37.7
None	No IPR available	GENE3D	2.30.30.100		coord: 12..127 e-value: 1.8E-22 score: 81.3
None	No IPR available	PANTHER	PTHR15588:SF17	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1	coord: 13..123
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 13..123
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 12..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G14200.1	Clc07G14200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
molecular_function	GO:0000339	RNA cap binding