Clc07G13960 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G13960
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr07: 28670263 .. 28670843 (-)
RNA-Seq ExpressionClc07G13960
SyntenyClc07G13960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATCTGTTTCTCCTGAATATGAGATGGACGATACTGGTTTTGATGATTTTGATCTTGGTCTCAACTTTTCCAAGGTGAGTCACTGATGTTTTTCCTTCTGTTATATTTTTCATCTCTTAGATTCATCTGGTACGTTCATGTCTTAATGAAATGTGTTTTTTAAATTTTCCAGTTCTTGGAAGAAGCAAAACTCCATGCAATAGAACAAGATTTCAAGGCCTCCACAGAAGAAGAAACAGGAAGGAAATGGTTGGCACAAGAGAAAAAGAGCAAGAAATCATGGAAAAGCACACTCTTCTCGTGGTTTAAAAGTGATAACAAGACCAAGCCTCTGCCTAAACCAGAAAGAAATCCTCACACACCCAATAAAAGACGTGTTCATGTTTCTGGTCCAATTTACACTGCAGCTACGACTATCGATAACAGACCCCGACGCCGTCCAATGTCTGGACCAATCCCTGGTCTCTTCAATCCTAGTATGAGAACAGAGATGGAGATCCCATATATGTGTCTCCACCAGTTTACTACCCCCAATACCAATCATAATTATGGTCCAATTTATCTTGTTACATAG

mRNA sequence

ATGAAGAAATCTGTTTCTCCTGAATATGAGATGGACGATACTGGTTTTGATGATTTTGATCTTGGTCTCAACTTTTCCAAGTTCTTGGAAGAAGCAAAACTCCATGCAATAGAACAAGATTTCAAGGCCTCCACAGAAGAAGAAACAGGAAGGAAATGGTTGGCACAAGAGAAAAAGAGCAAGAAATCATGGAAAAGCACACTCTTCTCGTGGTTTAAAAGTGATAACAAGACCAAGCCTCTGCCTAAACCAGAAAGAAATCCTCACACACCCAATAAAAGACGTGTTCATGTTTCTGGTCCAATTTACACTGCAGCTACGACTATCGATAACAGACCCCGACGCCGTCCAATGTCTGGACCAATCCCTGGTCTCTTCAATCCTAGTATGAGAACAGAGATGGAGATCCCATATATGTGTCTCCACCAGTTTACTACCCCCAATACCAATCATAATTATGGTCCAATTTATCTTGTTACATAG

Coding sequence (CDS)

ATGAAGAAATCTGTTTCTCCTGAATATGAGATGGACGATACTGGTTTTGATGATTTTGATCTTGGTCTCAACTTTTCCAAGTTCTTGGAAGAAGCAAAACTCCATGCAATAGAACAAGATTTCAAGGCCTCCACAGAAGAAGAAACAGGAAGGAAATGGTTGGCACAAGAGAAAAAGAGCAAGAAATCATGGAAAAGCACACTCTTCTCGTGGTTTAAAAGTGATAACAAGACCAAGCCTCTGCCTAAACCAGAAAGAAATCCTCACACACCCAATAAAAGACGTGTTCATGTTTCTGGTCCAATTTACACTGCAGCTACGACTATCGATAACAGACCCCGACGCCGTCCAATGTCTGGACCAATCCCTGGTCTCTTCAATCCTAGTATGAGAACAGAGATGGAGATCCCATATATGTGTCTCCACCAGTTTACTACCCCCAATACCAATCATAATTATGGTCCAATTTATCTTGTTACATAG

Protein sequence

MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFKASTEEETGRKWLAQEKKSKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMSGPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT
Homology
BLAST of Clc07G13960 vs. NCBI nr
Match: XP_038895377.1 (uncharacterized protein LOC120083617 [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 7.4e-72
Identity = 135/160 (84.38%), Postives = 144/160 (90.00%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFKASTEEETGRKWLAQEKKS 60
           M KSVSP+YEMDD GFDD DL LNFSKFL+EAK HAIEQDFKASTEEETGRKWLAQEKKS
Sbjct: 33  MMKSVSPDYEMDDPGFDDIDLSLNFSKFLKEAKRHAIEQDFKASTEEETGRKWLAQEKKS 92

Query: 61  KKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMSG 120
           KKSWK+TLFSW KS+ KTKP+PKPE+NPHTPNKRRVHVSGPIYT ATT D+RPRR PMSG
Sbjct: 93  KKSWKNTLFSWLKSEKKTKPMPKPEKNPHTPNKRRVHVSGPIYTGATTTDSRPRRHPMSG 152

Query: 121 PIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           PI  LFNPSMRT+MEIPYM LHQ  TPN+NH YGPIYLVT
Sbjct: 153 PIASLFNPSMRTDMEIPYMYLHQLNTPNSNHIYGPIYLVT 192

BLAST of Clc07G13960 vs. NCBI nr
Match: XP_011651731.1 (uncharacterized protein LOC101209455 [Cucumis sativus] >KGN58479.1 hypothetical protein Csa_002575 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 127/161 (78.88%), Postives = 141/161 (87.58%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS+S +YEM++ GFDDFD+GLNFSKFLEEAK HA +Q FK AS EEET RKWLAQEKK
Sbjct: 1   MKKSISLDYEMENPGFDDFDIGLNFSKFLEEAKHHATQQHFKAASIEEETERKWLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGPIY+ A TID RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPIYSEAMTIDGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNP+MRTE EIPYMCLHQ + PNTN NYGPIYLVT
Sbjct: 121 GPIASLFNPTMRTETEIPYMCLHQLSAPNTNQNYGPIYLVT 161

BLAST of Clc07G13960 vs. NCBI nr
Match: XP_022152626.1 (uncharacterized protein LOC111020302 [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 127/163 (77.91%), Postives = 137/163 (84.05%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFKA--STEEETGRKWLAQEK 60
           M KSVSP+ EMDD GFD+FD  L+FSKFLEEAK HA  QDFKA  STEEE GRKWL QEK
Sbjct: 1   MNKSVSPDLEMDDPGFDEFDPRLSFSKFLEEAKHHATVQDFKASKSTEEEAGRKWLGQEK 60

Query: 61  KSKKSWKSTLFSWFKSDNKTKPLPKPERN-PHTPNKRRVHVSGPIYTAATTIDNRPRRRP 120
           KSKKSWK+T+FSW KSD K+KPLPKPE N PHT +KR VHVSGPIYT A T D RPRRRP
Sbjct: 61  KSKKSWKTTIFSWLKSDKKSKPLPKPEINHPHTSSKRLVHVSGPIYTGAMTTDGRPRRRP 120

Query: 121 MSGPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
            SGPI  LFNPSMRTEMEIPYMCLHQ T+PN++HNYGPIYLVT
Sbjct: 121 TSGPIASLFNPSMRTEMEIPYMCLHQLTSPNSSHNYGPIYLVT 163

BLAST of Clc07G13960 vs. NCBI nr
Match: TYK19187.1 (uncharacterized protein E5676_scaffold522G001220 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 124/161 (77.02%), Postives = 138/161 (85.71%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS S +YEM++TGFDDFD+GLNFS FLEEAK HA  Q  K AS EEETGRK LAQEKK
Sbjct: 1   MKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEETGRKRLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGP+Y+ ATT + RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNPSMRTE EIPYMCL Q + PN+NHNYGPIYLVT
Sbjct: 121 GPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 161

BLAST of Clc07G13960 vs. NCBI nr
Match: XP_008460365.1 (PREDICTED: uncharacterized protein LOC103499209 isoform X2 [Cucumis melo] >XP_008460366.1 PREDICTED: uncharacterized protein LOC103499209 isoform X2 [Cucumis melo] >KAA0053600.1 uncharacterized protein E6C27_scaffold190G001740 [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 9.0e-62
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS S +YEM++TGFDDFD+GLNFS FLEEAK HA  Q  K AS EEE GRK LAQEKK
Sbjct: 1   MKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEERGRKRLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGP+Y+ ATT + RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNPSMRTE EIPYMCL Q + PN+NHNYGPIYLVT
Sbjct: 121 GPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 161

BLAST of Clc07G13960 vs. ExPASy TrEMBL
Match: A0A0A0LC20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646660 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.0e-66
Identity = 127/161 (78.88%), Postives = 141/161 (87.58%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS+S +YEM++ GFDDFD+GLNFSKFLEEAK HA +Q FK AS EEET RKWLAQEKK
Sbjct: 1   MKKSISLDYEMENPGFDDFDIGLNFSKFLEEAKHHATQQHFKAASIEEETERKWLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGPIY+ A TID RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPIYSEAMTIDGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNP+MRTE EIPYMCLHQ + PNTN NYGPIYLVT
Sbjct: 121 GPIASLFNPTMRTETEIPYMCLHQLSAPNTNQNYGPIYLVT 161

BLAST of Clc07G13960 vs. ExPASy TrEMBL
Match: A0A6J1DIA9 (uncharacterized protein LOC111020302 OS=Momordica charantia OX=3673 GN=LOC111020302 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 127/163 (77.91%), Postives = 137/163 (84.05%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFKA--STEEETGRKWLAQEK 60
           M KSVSP+ EMDD GFD+FD  L+FSKFLEEAK HA  QDFKA  STEEE GRKWL QEK
Sbjct: 1   MNKSVSPDLEMDDPGFDEFDPRLSFSKFLEEAKHHATVQDFKASKSTEEEAGRKWLGQEK 60

Query: 61  KSKKSWKSTLFSWFKSDNKTKPLPKPERN-PHTPNKRRVHVSGPIYTAATTIDNRPRRRP 120
           KSKKSWK+T+FSW KSD K+KPLPKPE N PHT +KR VHVSGPIYT A T D RPRRRP
Sbjct: 61  KSKKSWKTTIFSWLKSDKKSKPLPKPEINHPHTSSKRLVHVSGPIYTGAMTTDGRPRRRP 120

Query: 121 MSGPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
            SGPI  LFNPSMRTEMEIPYMCLHQ T+PN++HNYGPIYLVT
Sbjct: 121 TSGPIASLFNPSMRTEMEIPYMCLHQLTSPNSSHNYGPIYLVT 163

BLAST of Clc07G13960 vs. ExPASy TrEMBL
Match: A0A5D3D6L0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001220 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.8e-63
Identity = 124/161 (77.02%), Postives = 138/161 (85.71%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS S +YEM++TGFDDFD+GLNFS FLEEAK HA  Q  K AS EEETGRK LAQEKK
Sbjct: 1   MKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEETGRKRLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGP+Y+ ATT + RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNPSMRTE EIPYMCL Q + PN+NHNYGPIYLVT
Sbjct: 121 GPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 161

BLAST of Clc07G13960 vs. ExPASy TrEMBL
Match: A0A1S3CDK1 (uncharacterized protein LOC103499209 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499209 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.4e-62
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS S +YEM++TGFDDFD+GLNFS FLEEAK HA  Q  K AS EEE GRK LAQEKK
Sbjct: 1   MKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEERGRKRLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGP+Y+ ATT + RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNPSMRTE EIPYMCL Q + PN+NHNYGPIYLVT
Sbjct: 121 GPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 161

BLAST of Clc07G13960 vs. ExPASy TrEMBL
Match: A0A5A7UEH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001740 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.4e-62
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 0

Query: 1   MKKSVSPEYEMDDTGFDDFDLGLNFSKFLEEAKLHAIEQDFK-ASTEEETGRKWLAQEKK 60
           MKKS S +YEM++TGFDDFD+GLNFS FLEEAK HA  Q  K AS EEE GRK LAQEKK
Sbjct: 1   MKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEERGRKRLAQEKK 60

Query: 61  SKKSWKSTLFSWFKSDNKTKPLPKPERNPHTPNKRRVHVSGPIYTAATTIDNRPRRRPMS 120
           +KKSWK+TLFSW KSD K+K LPKPE+NPHTPNKRRV+VSGP+Y+ ATT + RPRRRPMS
Sbjct: 61  NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRRRPMS 120

Query: 121 GPIPGLFNPSMRTEMEIPYMCLHQFTTPNTNHNYGPIYLVT 161
           GPI  LFNPSMRTE EIPYMCL Q + PN+NHNYGPIYLVT
Sbjct: 121 GPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895377.17.4e-7284.38uncharacterized protein LOC120083617 [Benincasa hispida][more]
XP_011651731.11.0e-6578.88uncharacterized protein LOC101209455 [Cucumis sativus] >KGN58479.1 hypothetical ... [more]
XP_022152626.14.8e-6377.91uncharacterized protein LOC111020302 [Momordica charantia][more]
TYK19187.11.8e-6277.02uncharacterized protein E5676_scaffold522G001220 [Cucumis melo var. makuwa][more]
XP_008460365.19.0e-6276.40PREDICTED: uncharacterized protein LOC103499209 isoform X2 [Cucumis melo] >XP_00... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LC205.0e-6678.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646660 PE=4 SV=1[more]
A0A6J1DIA92.3e-6377.91uncharacterized protein LOC111020302 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3D6L08.8e-6377.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CDK14.4e-6276.40uncharacterized protein LOC103499209 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7UEH54.4e-6276.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..92
NoneNo IPR availablePANTHERPTHR35488:SF4SUBFAMILY NOT NAMEDcoord: 1..160
NoneNo IPR availablePANTHERPTHR35488OS05G0358900 PROTEIN-RELATEDcoord: 1..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G13960.1Clc07G13960.1mRNA