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Clc07G12520 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCTTACACATTTCTCCATTTCCAAAAGGAACCCGCTAAAGAAGAGAGAAAGAGATAGAAGAAAAAGCTAATCAATTCGCCGTAGAAGTGGTGTGACCTGAGATCATAGCCGGAGAATCACCAACCATGTGGAGGAGATTGCTCTCTTTGCAGCTTAATGCCCTAAAACGTCTTCCTTTATCATCGACGGCAGCATCTGCTGTTCCATCGGGATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCGCCTTACGTTTCGCTCTTCGCTCGCCATTTCAGCGCCGAGGCTGGTAGATCCTATTCTCCTCTCAGGATTTCATACTCATAACTCATGGATTATTACTTATTTTTCATTCGGTCACCGCGTGTATGAACATGGATCTATAGTATGAGTGCGAACGTGGATTTGGTCTCGCCTGATTAATATTTTGATTTTTGTAAATTAGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAAGATGTAATGCCAATTGCAACCGGACAGGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGTGATTTTTCATCTGTTTCGATGCATGATTTCGTTTTCCCGATTTGATGTTGAAAAAAGAAGAGAGAGAGAGAGAAAAAAAAAAAAAAAAAAAAAACAGAAACAGCGGCATACGGACTGAAAATAGGTAAAAGATGCTTTCAATCAATTGCCGAAAAAGGATATCAGGTGGATTTTTTGTAGTTATACTATAGTTAATTGATTCATTCATTTTCATGAGACTGTCAATATCAATCCTCTACTTACATCGTTTTATTTATATTTGTGAACGGTCATTTCCCAAACAAATGCTTTTTGCTGTTCCTTGAATTGGTTTTAGAAAAGGTCGACTGTATTTTTGACACAGAAATTTCTGTATGAGGCCTGATTTGATGATGTTAGGTCATTCTATTTCAAATATGTAGATAGATTTTAGAGATGTATAGGTGTAATAATCAACGAATAAAAGAAGCAGCCTACAACCAGTGAACACGTGTGCTAAAAGGTTCAATAGAATGATTGAACAAACATTAAAAATGCACAAGCTGAGTCAACAACCTGCTGGGTCTGTTAGGCTGAAGGTTTTGGATTAATAGGTGGCATACGATACGACCCGAAACCTTCCAGTCAACATGTTGTATTTCGTGGGCTTCTTAAATTTTCTGAAGCAATCCTTATATTGGACTGAGTCTGGTTTATGTAAATATTTCTGTTGGTTGGCATCTGAAGTATTTTTCATTATGAAAGTGAGTCTCATTCCAATGGGTTTTATGTTTGCAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGGTTGGTATATTTTGATGTTTACAGTTAATTTTATTTTTGCACACTTTGGGTTGTGTCTTATGCCGCTCAAGGAAGCCCTTTTTCTCCTTTCATCGTACTCGATATTGATGTTTTATTTGTTATAAATAAAGGAACATGAGATGTTGAATTGTACTTTTCTATGTTGTGATTTGTGAGCCTGTGTGTGTTTTGTTTTCCGGTAATTTAAATGTCAAATTACTGTTGGAGTCTGAAGGCTTTTGGGTTAGTCAAAAAGGTATGCATGCTATCATTAGTTTGGGTATATCTGGAAGAAGATCGACTGATAAAAGATAGAACTTCTGGATGCATGTAGTTCCAGGTCTTTGTTGGGCAATTTGGTCAGAGAGAAATAACGTCACTTTCTTAGACAAAGTTGTAGTCTGAGTTTTTTGGGTGGAAGGTTTTTATTCACCTTATGTTTGTCATGTGTGGCCTCATAGATTGAGGAGGAACTTGGACTATGTTTAGCCCTTTTCACTGTAGATGGTCTGTCTATTTTCTTTTGTTTTTTTTCCTTTATATTTTTTCTTGATTGGAAACAAATTTCTTTGATGAAAGAAATATACAGAGGTTACCTAAAGGCTCCAGATTTTTCTGTGGTTGAAGATGAGCAGTAGTTACAAAGAAAGAGAATTATCATGAGAGGCTCAAGAAGAGGCCACAAATTTAACAAGGAGGCATGAATTGAATCTAACCTGCTACCAAAAGTTAACCCACTCTCCAATTTCTCTCTGTCATTTTTATTTTTAAAATCAACTTCGGATAAAGACCACCCTTACTGTGTGTTCCTTTCTAGTGAGCAAACCTCATATGGCCATATAAACATCTCATTGAAAGAGCAGGAGCTTCCTTTTGTGAATTGTCCAGTGAACTTGTAACTCGTTACCATATTTGATAGCAACTACCTTAGCCTAAAGAGAACTATGTGCCCTAGGAATATTATGTTGTGAATTGCCTGGTGAAGTCCTTTCCATGTTTGTTAGCAATCACGATATGCTGAAGAGAGCTAGGTTCCCTAGGATATCTCCATAACCATTTGCAAAGAAAAAGATGTTTCTGTTTGGTATCCCAAATGTTTAGACCTCCATTCTCAAGAGAGGATAGACCACAAACCATAATTCATCTAACAGGGTGAGAACCCGTTTTGCCATCTGAACCCTCAAAAAAGATATGGCTGATGTATTTGCTGAAAACTCTTTAATAGGGATGTTGAAAAATCGAAAAAAGTATAAGAGGAAGTTGGAAAGAATTTTCATATTCTTGATTAGAGGATATCTCATTCTCTCTCCTTCTATGCAAAAAAGAGTCGTGAGTTAAGTGGCCGTTCATGCTATCTGGTTACACCATTGAAGATTGAGGTTGGACGAATAGAAAAATTACCGTGGATGTAAATGCAGCCCTGGCTTTCTTCATCTTGACGACAGAGAACACACCAACTTGGGACTTGGGAGAGTAATTGTAGGATAGGGAATTTTCTCCCTTCCACACCATTTTATTATTTTAATTCTCATTTCGAAATGGTGTTAAAGCATATAGGGGACGATATATTGAAGGCAAACCTTTGGTCCATTGCTGATATGAGCGTACATAGCTCAAGTGGTCAGGCATTACTCATTAATACTTCTGCTTATGGGTGTGTTCAAAGCTCCTCCTTTTAGCATAATATTTATGGCCCCTTGGTACTAACTAGGTGAGGTTTTTTACTGCAGTTCCCATTTTATTATATCTTTTGTCATTTCTGTTTTGTTTGTAATTGAGTGTTTATTTTGCATTCTATGACCTTGAATGTTAATACTTTTATGTGGTGATTATTGATTTTGTGATCAGTTGTTTATTTAAATGAGTGTTCACTTGGCTTCAAATTCAATGAAGCCTTTAACTTGTTTTGCTCTTGATGCACATCGAAATATCATGAAGATGTGCCTGAAAGAATAAGCTTGGTTGCATGAATTATTTCCTTGGAAATCTAAATACTTTCTTTATGTCTTTAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGGTAAGTACTTGCAATCTCTCTTTTATCCATGCTTTTTTCATCATTTTTTGTGCAAGTCTGAAAAAGATTTACATAAGTAAATTTTGTGCTCTTCCTCTACGCATGAGAATTTCGAACTTATTTCTGTTGCTGCTTTCGAATTTTGTAGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCCAGCCACATGAATGCCCTGTGTGCACGCAGTATTTTGTGGTGAGGATTTATTTTAAATTATTACGTTATGTTGCCATGATATGGAATGCCCCCAAAACCATAACCATAGATTACAATCTGTTCTAATTTGAATTGATTTTTATGCATATCTCAACTGGGTAGGGGTTCAAATCTCCCATCCTCATCTTAAGTACCAAAAATAAAAAAAGGGTCTTTGTGGATACATATGAATTACTTATGTTCCTCCTTTCTCCATGGTGAGGCAATTGCATTCTTTGAGTTGTGATTATTATTATTATTTTGATTTCAACAAGTAGAGGTGGAGAATTTGAATCATGACCTCTTGATTGAGACAAATCCTCCCTTAGCCAATTGAGCTATAGGCTCAGGTTGGTTCTTCTAGTTATGATTAGTATCAAAGTTTGAATGTTAGTTTTCTCTCTCTCCGATTGCCCCACTTCTTGAATATGGGATAAAGACATTCGTGTCTTAATTAGAAATTAGTTAGGAGTGCCAAATTTTTCTAATTTTGAATTGTGTTCGCAGCTGGAAGTAGTGGGACCTGGAGGATCGCCAGATGGCTATGGAGATGATGATCACCATCATTGATTGCAAACATCTTTTCCAGAATAAACCGGTGCTTTTAAAGAGAGAAATGGAATTACACTGCAGTTTTAATTTCAAGCTGTGTGTTTTATTTGCAGTTGTTGCTTCAGCAACGATAGGAATCTGAGTTTTTTTTCCTTGTGAGTTAGAGACACAGGCAAGTCTTCTTTTGGAAGATACAGATCCCTTTTTAGGCTTTCTTTTATGTGTTTCCAAATAATTGGAGGCTTCTTGATTCTTTACCATGACCCAAGTGGCAGTACAATAACACCACAACCCTTTTGATCTTTGAAATATAATTTGAAAACTTTCTGAAA GTCTTACACATTTCTCCATTTCCAAAAGGAACCCGCTAAAGAAGAGAGAAAGAGATAGAAGAAAAAGCTAATCAATTCGCCGTAGAAGTGGTGTGACCTGAGATCATAGCCGGAGAATCACCAACCATGTGGAGGAGATTGCTCTCTTTGCAGCTTAATGCCCTAAAACGTCTTCCTTTATCATCGACGGCAGCATCTGCTGTTCCATCGGGATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCGCCTTACGTTTCGCTCTTCGCTCGCCATTTCAGCGCCGAGGCTGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAAGATGTAATGCCAATTGCAACCGGACAGGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGAGGATATCTCATTCTCTCTCCTTCTATGCAAAAAAGAGTCGTGAGTTAAGTGGCCGTTCATGCTATCTGGTTACACCATTGAAGATTGAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCCAGCCACATGAATGCCCTGTGTGCACGCAGTATTTTGTGCTGGAAGTAGTGGGACCTGGAGGATCGCCAGATGGCTATGGAGATGATGATCACCATCATTGATTGCAAACATCTTTTCCAGAATAAACCGGTGCTTTTAAAGAGAGAAATGGAATTACACTGCAGTTTTAATTTCAAGCTGTGTGTTTTATTTGCAGTTGTTGCTTCAGCAACGATAGGAATCTGAGTTTTTTTTCCTTGTGAGTTAGAGACACAGGCAAGTCTTCTTTTGGAAGATACAGATCCCTTTTTAGGCTTTCTTTTATGTGTTTCCAAATAATTGGAGGCTTCTTGATTCTTTACCATGACCCAAGTGGCAGTACAATAACACCACAACCCTTTTGATCTTTGAAATATAATTTGAAAACTTTCTGAAA ATGTGGAGGAGATTGCTCTCTTTGCAGCTTAATGCCCTAAAACGTCTTCCTTTATCATCGACGGCAGCATCTGCTGTTCCATCGGGATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCGCCTTACGTTTCGCTCTTCGCTCGCCATTTCAGCGCCGAGGCTGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAAGATGTAATGCCAATTGCAACCGGACAGGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGAGGATATCTCATTCTCTCTCCTTCTATGCAAAAAAGAGTCGTGAGTTAAGTGGCCGTTCATGCTATCTGGTTACACCATTGAAGATTGAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCCAGCCACATGAATGCCCTGTGTGCACGCAGTATTTTGTGCTGGAAGTAGTGGGACCTGGAGGATCGCCAGATGGCTATGGAGATGATGATCACCATCATTGA MWRRLLSLQLNALKRLPLSSTAASAVPSGSISTASRLAVAASSHVSPSPYVSLFARHFSAEAAVDAGLKKNVEDVMPIATGQEREELEAALEGRDILDINNPVGPFGTKRISHSLSFYAKKSRELSGRSCYLVTPLKIEEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGQPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH Homology
BLAST of Clc07G12520 vs. NCBI nr
Match: XP_038878141.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida]) HSP 1 Score: 320.9 bits (821), Expect = 8.4e-84 Identity = 168/208 (80.77%), Postives = 171/208 (82.21%), Query Frame = 0
BLAST of Clc07G12520 vs. NCBI nr
Match: XP_004152218.1 (cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 hypothetical protein Csa_014612 [Cucumis sativus]) HSP 1 Score: 319.7 bits (818), Expect = 1.9e-83 Identity = 167/209 (79.90%), Postives = 173/209 (82.78%), Query Frame = 0
BLAST of Clc07G12520 vs. NCBI nr
Match: XP_008454275.1 (PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis melo] >KAA0044422.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa] >TYK29549.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa]) HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81 Identity = 163/208 (78.37%), Postives = 168/208 (80.77%), Query Frame = 0
BLAST of Clc07G12520 vs. NCBI nr
Match: XP_022998034.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71 Identity = 151/209 (72.25%), Postives = 158/209 (75.60%), Query Frame = 0
BLAST of Clc07G12520 vs. NCBI nr
Match: XP_023523888.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523889.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71 Identity = 151/209 (72.25%), Postives = 159/209 (76.08%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 3.4e-48 Identity = 112/215 (52.09%), Postives = 133/215 (61.86%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 2.5e-46 Identity = 105/207 (50.72%), Postives = 127/207 (61.35%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2) HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22 Identity = 56/123 (45.53%), Postives = 69/123 (56.10%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy TrEMBL
Match: A0A0A0KYD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 9.0e-84 Identity = 167/209 (79.90%), Postives = 173/209 (82.78%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy TrEMBL
Match: A0A5A7TM92 (Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001540 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 6.5e-82 Identity = 163/208 (78.37%), Postives = 168/208 (80.77%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy TrEMBL
Match: A0A1S3BYC3 (cytochrome c oxidase subunit 5b-1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494723 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 6.5e-82 Identity = 163/208 (78.37%), Postives = 168/208 (80.77%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy TrEMBL
Match: A0A6J1KD83 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492803 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 1.0e-71 Identity = 151/209 (72.25%), Postives = 158/209 (75.60%), Query Frame = 0
BLAST of Clc07G12520 vs. ExPASy TrEMBL
Match: A0A6J1GC67 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452829 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 6.7e-71 Identity = 149/209 (71.29%), Postives = 158/209 (75.60%), Query Frame = 0
BLAST of Clc07G12520 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein ) HSP 1 Score: 193.0 bits (489), Expect = 2.4e-49 Identity = 112/215 (52.09%), Postives = 133/215 (61.86%), Query Frame = 0
BLAST of Clc07G12520 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein ) HSP 1 Score: 191.8 bits (486), Expect = 5.5e-49 Identity = 112/215 (52.09%), Postives = 132/215 (61.40%), Query Frame = 0
BLAST of Clc07G12520 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein ) HSP 1 Score: 186.8 bits (473), Expect = 1.8e-47 Identity = 105/207 (50.72%), Postives = 127/207 (61.35%), Query Frame = 0
BLAST of Clc07G12520 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein ) HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23 Identity = 56/123 (45.53%), Postives = 69/123 (56.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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