![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Clc07G12030 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAACTTTGGCGCCTCCACAAATATCAAAAACCCTTAGTCTCTAACCTTTTTCCCTCTTCTCCAAGACCTCTCTCTCTCTCTCTCTCACTTCACCGCCTGCAAATCCATGGCTTCATCGTCCGGAGCCAAATCTCGACAATCCGCCACATCCTTCCCGTCGCGACGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCGAGTACGGCTTTCATGTCTCGACCGTCGTCTATGAAGCCTGTAGCAATGTATAGAAAATCTTCTTCTTCTTCTTCTTCGTCTACGCCGTCGTCGTCGTCGGCGGTATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCCGTTCAGAAGAATCGCGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCCTTTAGGTGTTCTTTCCACAAGAATTCGAGGTACTCTGTAAATGTCGCGAATCGCAGCCAATTCCAGAACGGATCGTTGAATATCCGGAGATCGGCAATGACGAATTCGTTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTGGTGAAAAGATCTTTATCGGCTTTAATTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCAGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGACCAGAGGAGGAGGACTAGCGGTACATTTTCCAACCCTAATCATTCACTGCGAACTGGTTTTTTTGTCCATAGCGACGAAGAAGCTCATCAAAAGAAGATCACTATTTAAAACTCACCGTTACGAATTCTGTTTTCATACTGTGATTTACAAATCAGTTATCATGGACAATTACATCCATAGACGAATTTGAGGAATGTACAAGCAGTGACTGAATATTGGTGTTGATGATCATTCGAGAAGTGTTGCAACTCGAACTGCCGATTGGATGGTGATTAGAATTGGG GAAAACTTTGGCGCCTCCACAAATATCAAAAACCCTTAGTCTCTAACCTTTTTCCCTCTTCTCCAAGACCTCTCTCTCTCTCTCTCTCACTTCACCGCCTGCAAATCCATGGCTTCATCGTCCGGAGCCAAATCTCGACAATCCGCCACATCCTTCCCGTCGCGACGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCGAGTACGGCTTTCATGTCTCGACCGTCGTCTATGAAGCCTGTAGCAATGTATAGAAAATCTTCTTCTTCTTCTTCTTCGTCTACGCCGTCGTCGTCGTCGGCGGTATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCCGTTCAGAAGAATCGCGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCCTTTAGGTGTTCTTTCCACAAGAATTCGAGGTACTCTGTAAATGTCGCGAATCGCAGCCAATTCCAGAACGGATCGTTGAATATCCGGAGATCGGCAATGACGAATTCGTTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTGGTGAAAAGATCTTTATCGGCTTTAATTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCAGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGACCAGAGGAGGAGGACTAGCGTTATCATGGACAATTACATCCATAGACGAATTTGAGGAATGTACAAGCAGTGACTGAATATTGGTGTTGATGATCATTCGAGAAGTGTTGCAACTCGAACTGCCGATTGGATGGTGATTAGAATTGGG ATGGCTTCATCGTCCGGAGCCAAATCTCGACAATCCGCCACATCCTTCCCGTCGCGACGCTACATTTCTTCTCCGTCGGCTTTCGCTTCCTCGAGTACGGCTTTCATGTCTCGACCGTCGTCTATGAAGCCTGTAGCAATGTATAGAAAATCTTCTTCTTCTTCTTCTTCGTCTACGCCGTCGTCGTCGTCGGCGGTATCGTCTGTGAGATTTCAGATTGATCAGAGGTCGGCATCTCCTAGTCGTTCGATTTCCGTTCAGAAGAATCGCGACAGGAATGCGAATGCGGTGTCGTCGAACAAGAAGAAAACGTGCATGTGTTCTCCGACGAAACATCCAGGCTCCTTTAGGTGTTCTTTCCACAAGAATTCGAGGTACTCTGTAAATGTCGCGAATCGCAGCCAATTCCAGAACGGATCGTTGAATATCCGGAGATCGGCAATGACGAATTCGTTAGTGAGAATTGGAGGCGTAGAAGGTGCAGACCTGGTGAAAAGATCTTTATCGGCTTTAATTAGGCCTTCTTCACATCAGCAGCGGCGGCGATCAGCTTTTCAGCCTAGACCTAGCCGTCTATCAGTCATGTCAAGACCAGAGGAGGAGGACTAG MASSSGAKSRQSATSFPSRRYISSPSAFASSSTAFMSRPSSMKPVAMYRKSSSSSSSSTPSSSSAVSSVRFQIDQRSASPSRSISVQKNRDRNANAVSSNKKKTCMCSPTKHPGSFRCSFHKNSRYSVNVANRSQFQNGSLNIRRSAMTNSLVRIGGVEGADLVKRSLSALIRPSSHQQRRRSAFQPRPSRLSVMSRPEEED Homology
BLAST of Clc07G12030 vs. NCBI nr
Match: XP_038877738.1 (uncharacterized protein LOC120069962 [Benincasa hispida]) HSP 1 Score: 300.8 bits (769), Expect = 8.7e-78 Identity = 180/202 (89.11%), Postives = 182/202 (90.10%), Query Frame = 0
BLAST of Clc07G12030 vs. NCBI nr
Match: XP_008454197.1 (PREDICTED: uncharacterized protein LOC103494676 [Cucumis melo] >KAA0044464.1 serine-rich protein-like protein [Cucumis melo var. makuwa] >TYK29591.1 serine-rich protein-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 256.9 bits (655), Expect = 1.4e-64 Identity = 155/202 (76.73%), Postives = 172/202 (85.15%), Query Frame = 0
BLAST of Clc07G12030 vs. NCBI nr
Match: XP_004152334.1 (uncharacterized protein LOC101207294 [Cucumis sativus] >KGN52922.1 hypothetical protein Csa_015077 [Cucumis sativus]) HSP 1 Score: 242.7 bits (618), Expect = 2.8e-60 Identity = 150/204 (73.53%), Postives = 164/204 (80.39%), Query Frame = 0
BLAST of Clc07G12030 vs. NCBI nr
Match: XP_023528743.1 (uncharacterized protein LOC111791584 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 226.1 bits (575), Expect = 2.7e-55 Identity = 141/202 (69.80%), Postives = 153/202 (75.74%), Query Frame = 0
BLAST of Clc07G12030 vs. NCBI nr
Match: KAG6581947.1 (hypothetical protein SDJN03_21949, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 214.2 bits (544), Expect = 1.1e-51 Identity = 140/206 (67.96%), Postives = 156/206 (75.73%), Query Frame = 0
BLAST of Clc07G12030 vs. ExPASy TrEMBL
Match: A0A5D3E1W2 (Serine-rich protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002000 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 7.0e-65 Identity = 155/202 (76.73%), Postives = 172/202 (85.15%), Query Frame = 0
BLAST of Clc07G12030 vs. ExPASy TrEMBL
Match: A0A1S3BY19 (uncharacterized protein LOC103494676 OS=Cucumis melo OX=3656 GN=LOC103494676 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 7.0e-65 Identity = 155/202 (76.73%), Postives = 172/202 (85.15%), Query Frame = 0
BLAST of Clc07G12030 vs. ExPASy TrEMBL
Match: A0A0A0KWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006290 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 1.4e-60 Identity = 150/204 (73.53%), Postives = 164/204 (80.39%), Query Frame = 0
BLAST of Clc07G12030 vs. ExPASy TrEMBL
Match: A0A6J1IQC9 (uncharacterized protein LOC111479564 OS=Cucurbita maxima OX=3661 GN=LOC111479564 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 6.8e-52 Identity = 140/203 (68.97%), Postives = 152/203 (74.88%), Query Frame = 0
BLAST of Clc07G12030 vs. ExPASy TrEMBL
Match: A0A6J1DHK6 (uncharacterized protein LOC111020980 OS=Momordica charantia OX=3673 GN=LOC111020980 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 1.5e-51 Identity = 145/213 (68.08%), Postives = 163/213 (76.53%), Query Frame = 0
BLAST of Clc07G12030 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related ) HSP 1 Score: 125.9 bits (315), Expect = 3.6e-29 Identity = 94/197 (47.72%), Postives = 127/197 (64.47%), Query Frame = 0
BLAST of Clc07G12030 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related ) HSP 1 Score: 125.9 bits (315), Expect = 3.6e-29 Identity = 94/197 (47.72%), Postives = 127/197 (64.47%), Query Frame = 0
BLAST of Clc07G12030 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related ) HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28 Identity = 92/196 (46.94%), Postives = 124/196 (63.27%), Query Frame = 0
BLAST of Clc07G12030 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related ) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-12 Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|