Clc07G11860 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G11860
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CUE domain-containing protein
Location	ClcChr07: 26668207 .. 26676307 (+)
RNA-Seq Expression	Clc07G11860
Synteny	Clc07G11860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCGAGTCCATATGTAAATAAGCCTCCTTCCATTGTAATTCGTAACGGTCCTCTCCTCTCCATTTCGAAGCTCGGTAGTCAGAAGAACCAAACCAACGAAACAAACTTCCCCTAAATCCCTCCCTTTTTGTTCCCTCTCTTCCTTCCCATTCCAAATTCCAAACCCTAGATTCTGCTTCACTCTCCTACAATGCCAACCATTTCTCCTCACTCAGAAAGGACTAAGATCGGTAACTTATGGCGTTTCAGCCGCTTCATTGATTACCGGTGTTTGGCTCCGGCTACGCTCGACGTTGATGCTGAATTTGACGCTCTCCACCGAAGGCCTTATCGCTTGCTTCCTCGACAGGATCTCATTGATCTCTTCGTCCTTAAGCTCGACGGCTCTGTATTTGGTGATTCCTTCCTCATTGTTTACATTTTCTTTGACTTCCTTTGCTTCTTGTAAGACGTGAGAAGAGAATCTGTCTTGAATGGAGTTTCTGTCGGTTTTCTGGTGGTTGAGATGGAAAATGGAAGATGAAAGATGGATGGAAACTGGAAAGTGCTTTAATATAACTTGCTTTAGAGAATATAATTGAGTGCTTTCTTGAGAACACTGTAGCGGGAAAAAAGCGTTTTAAAAAGAGTAGCTAATTAAACTGTTGCGGCTTATGGCGACTATGGCTAAGAAAAATGCAACAGCAATATGTTTAAATCTCGCGATTCTTTACATTATGCCATTTTTCTCCTGCTTTAATTGTAGGTGTGGAGATCATGTGTAGTAGTCTGAAAATAACCAAATAATTGCAGTATTAACCACAAATTAAGTTGATTTTGTATGGTTTGGCTATCCAGGTGTTCGTGTATCGCGCAATGGTACAGTAGCAGATCTTAAACGAGCGATTGAGGAAGTTTTTGATTCACCCGGGGGGAGTGAACACTGCAAGATTACATGGTAGTAGTATAAACCATGTTATGAGACTTATGTCTAATTTTATCACTGATGATTTTGTTTTTGTTCCTTTTAGGAGTTTTGTAATTTTATTGGGTTCTACATGTATGTTGTTTGTTTCCACCACATTAAATATTACTGGACGTGTATGCTCCTAGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAGAGTTTTTGGGATTAAAGATGGTGATCAGGTGTGAGAGAATGCTTGTGATGTGTCTCTGGCTTGTTCGTAGAGTTAATTAAATGCGGGGTACTCACTAGCTTTTAATGTTTTTCCCTCTTGTAATATGCAGCTTCAGTTTCTTAGGCATATGTCTATCAACTGTTTACCGATGAAGAGAGATAGGAAGAACCAAACTGCATCTTGCAAAACAATGCTGTTGTAAGTTGTTCTTTCTTATGGCTGCTGTAGCATATGCGTCTGTTTCTTCCAAAACAGCGTCATTTCTAAGTTGTTCTTTTTAATGGTTGCACTAGCACATGCATATATATGCCAATGCACGAGCACATTCTCTTTTCTGAACACAATTGCGCAATTTGATGGCTTGTTTAAAGTCTCATTGAGCAGGTGGCAGTCTACAAATTATGCAAACTGTATGACTTTGCAAGCCTCCCCCGGGGTTGGGAGAGGGGAGTCAACATATATATTACTCTTAGATCATTCAAATTTTTTCCCAAAATCAAATTTCCATTGTTTCTATTTTACATTGTCAGAAGTGCAGTTATCATCTCTGTTGCATTTCTCACTATTAGATTAGCCTGGACTTATCATTTCTAATATACATATCAAGTAAGAGGATAACGTAGTTCAGTATGAAGGAAAATTTCTCAATATTTTCTACTCTGCAATGAACAGTCGATGCTTTATTCTTGCACTGGTCTATAAGATAGTAAACTTATACTTCCCATAAAAGTCTCTCGCCAGAATCAAAATCTGTTGAAGAGAATCAACCTGCTGGTCAAGATGATGTTGAGAATTCTCAAGTTTGCAGGGAAAGTTCGAATCGAGAGGAGGTTGTTTCTATGGCTAGAGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGGTATTATATTCCAGGATATGGGGTTTTTGTAAGAGTGCATCAGACTGCCGGAATAGGCCTTCCTCTGGTTTTAGCATTACTTGACATTGGAAATGGACATGGAATAACACAAGCTGCAAGGTAATGAACTCAGCTAGGAAGTGTAGGGATTGAAACTTGAGCATTTGATTTATGAACATGACAAGTTAGATCCGAGTAGGCCTGGGAGAAAGGAAATAGAGGGAAGATTGACTCTGAATGTAAATATCAACCTTGATTTCTTGTTGGATAGTTCTGTAAAAAGTTCTTTTACTTCGCTTCTCTTTCCATCTTCTGTTGTAGCACTAAACTTAGAAGTATTTCCTTTTATATAAATAGAGAGAGGTGGAATAAATAATTTTAAGCACTTTTTTAGTTTGTTTTCTCTTGTTTTTAGAAAAAAAATACTTAAGTGAAAACTTGTTTTCCCTACTATTTGTTTGAAGTCTTTTTTCTTGCATTTGGTTTGTTTTCATGGTGGACTATGTTCTAAAAACAATTGAAGTTGTTTATTGTTTTATTTGAAAATTAATAGACAGTGTGAAGGTGAACAGTGATTTAAGTATGCAATAAACTTTATGGTGACTAATTTGATGAATTATCTCATGTTGTCTACTTGTTTTTCTTGCATTGATATTTCAAGATTTCGAAAAACAAAAATGTTTTAAAGATTTTTTTCTTAATAACATTTGGACATTCGTGGAGCCGTAGGGTTTAGGGTTGAGGAAGGGAGCATGTTTTAAAGATTTTTCTATAGCCCATAGTTTATGTCGTAACCTATTTGAGTTATGCTAAGGTTAAATATGTTACTTTTTTTAATGTTATCTTTTTAATTCATTAACTTTTTTTGGAATAATTGTGTTTTAGTCTCGAGGTCTCAAAATGAAGAAGACAGCAGCATGTATGTTTCATTGTCATACTAAAAACTGAATTTGCCAAGTGAAAACTTTGTTGGCAAATTCCTGTATATGTCAGATTTTGGTTTCTTTTCCTGTAATTTCTTCTGAGACTTGTTAGTGTACATCTGTGTTAGCCTTCTTGATTTGTTAGATTGTTTTACTGATTGTTTAATTTGTTGAACACAATTAGTTAATATTGTTAAAGCTTTTCCTATTTAATTAAGGTTGAAGTTACTCTATATTTAATTAAGCTTGTATCCCTGTAATATGTTATGTATTATGTTGAAATGCTTTGAATCTATTATTTGTCGGCATTTCGAATGTTCAAGTATGGAGTCTTATTAGTGGGGACTTGCAACACGCCTAAAACTTTTGACAAGGTTTAGAGAATTGTGTTATATAAACTCTCTAACTTTATATGTGCATATTTTTTCTAATCTAAATTATTCTCTGTAATAATAAAATGCTCTTCCTATACCTGTGGACGTAATTAACACACTGTTAATGACCACGTAAATTTTTCTGTGGAATTTTTATTATTTACACTTTTTTGCTTATCGTTATTTGTCGATTTTCATAACATATTATATAATTTTTTTTTCCCAATCAAATTTGTACCAAAATGTTAGTTTGGATTTGGTAGGTTACTACCAAGAAATCTGAGGAATACAAAATCATAGGAATGACCTGCAGGTTCATAGTGGAAGCTACCATTTGAAACTTTAGAAACCAAAACTAAATACACCTATTAAAAAAAAAATCAAATACTAAAATAAAGCAATTTTCTTAATTGTTTGAGTGATAAATTTTAAAATTAGAATGTATTAAAATATAAATTTTAAGGCAAAATACAAAAACTACCCTTAAAGTATTGTGATGGTTGCAATTAGACCCTCAAATTTTCAATTGTAAAAATTTGGCCCCTAAACTTTGTTAAAATTGAACCCTCAAGCTTATAATAATTGTAGAAATATGACCCACAAATGATAAAAATTGAACTCTTAAACTTATAAAAATGTTACAATTTATACAATTATGTAAATAGAAATGGAGGGGATGATTGGGGTGTTGAGTGGGTTATTAGAATTAATGGTTATTATAGTCAGTAAATTATAATAGTTTGTGTTTGGAGGACAAGCTATTTTAGTCTTAGTTTGTATTTGGGGTTTATACTATTTTATTTAAAATGACAATACTAATATGTAGTTAACTATAGATTATAATAGTTTGAAACACCAACCATTATAATTTAAGCTCTGCCCCTAGAATGAACTATCTACTTGAAGTTGGGGTTCAAACACCCCCCAAGAGAAATATGTAATTTAATCTAATAAAATCTCAACACTTATAAAAAAAAATCAAGAAGTAGTTTAATAAAATGATAATTATTTTAAAGGGTAAAACTGCTGGAAATATTTTCAAATATAGCAAAATGTTACTATCTATCAATATTATGTTTATTAATTATTAGTGCTTAATTGAAAGCGTCTATCAATTATCAATATTTATCAATGATAATAATATGTTATATATTTATAAATAATGTGAGTCATTTTATTATATTTGAAAATTAGAAAATTAGAGTGAAAGATGGATATATCCAGTCAAATTGGACTAAAAATTGGTATTTTTTGTTGACATTAAAATATTATATAACAGTATCATACAATAATAATAATTATTATTATTATTATTATTTAGGAAGTTATATAAATATTAGAATAAAGTTATCCTCTGCCGTTTGATATTTCATTTTCCTTTATTATTTATTTCTTTCTATATAAATCCTTAGAATTCCAATGTAAACGCTCCTATTTGATAAATTAATGCCTTAGAAAAGGGGAAAACAGAGACTTGAAAAAACCTAACCCCGAAGAAATCAAATTCGTCTTCTTCTTCTTCTTCCTCCTCTTTCCCAAGCAATCTCCCTTAACCCTAACCTTTTTCTCTTTCTGATTTCCATCGGATTTGAATTTGGTGTTTGCTCCGTGGACGAAGCTCTTTTTAGGAATTAGCTTCTGCGAGCCACTACCCGGAGACCATGTCTGCTGTGGTGTGCGGTACCAAGAGATCCTTCTTTGAAGAACTCCCGCCTTCCCCTCCCATTGCCAAGCGCCTCCGCTGCTCCACTTCTACTTCTCCAATTCGATTCGCTGCCCCTTCCCATATTGATCACCTCCAGCATTTGTTTCCCCACATGGACCATCAGGTTTCTTCTTCCTTCCTTGTACTTTTAGATTCAGTTCAGTTTTGAATTTGAGAAGCTCTCCTACTCCGTTTGTTGCTGATTGTTTTTGTTTTGTGCGTTGTTTAGTTCCTGCTTGTGTGGCACTTCTTGATAGGATAGGATTATAACCTGAATCTATATGGAATCTCTTACAACAGTTGTAGACCTTGGGGGAATCATGTTATTTTCTTCTGCTTGTATATTATAGTTGACTATGCCTCTGACACTTGAAATATCAATTAATTTGACTTAGTTGTGGCTGGAAATTGGAGTTGTTCTATCAGTTCTAATTTCTAATGCTTCTCTTTCGGTATCTTGTTAGATAACTGCTGCGTGTATGTTATAATTAATATTTCACGTTTGTTTTTTCCCCCAAGGTTTTCTTTCTCATGCTTTGATTTTGCCTTTCAGCTTCTTGTGAGAGCCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAGAAGTCTGAGTGACTTGTGTTTGGGGTCTGCCGTTGAGAATCCTGTTACTACTGCAGAACCAGAGACAAATTTGGATCAAGGTATCACAGAATGCTAAGTAATGAAGGATATGCTTCTTATGTAGTTTCCTTGTTTCTGTTCGCTCATGATTTTAATTATATTATGACGATGAATTCATTACATTCAAGATTAAATTCCCCCTTCAAGCATATTTGATGCATGTTTATTTCATGGAAGAGATCTAATGGGTCCCCGTCCCCCTAACTTGCTGTCCCTACTTTGGAATCCTAATTATACCCCTGCCTTGTGCAGGTTAGAGGAGGGTTTAAGTTTTGATTGAGATTTGAAAAACAAGAAACAGAGTTCTCATTCAGAGTACTATGCATCCATTATATTAGAATAAGATGTATTGTTTTCTTGTGTAAGAGACTAAATGCTTTGCTACCTACCCTCCTGTTTGTAGTTTGGGTTGATAAGCGTATGTTTACCGTATTGAATTGGCTAGTACATATGCATAAACAGTCGGAAAAAGAAACCTTTAGTCTGAATTGCTATAGATAAAGCTGGATGAGGAATTATAAATCATAATCTTCTTTGATTCTTTTGTCGTTGATGCTGTATTGCCCCTGATCGTTTTGTTATGTGTTCCCTTTTTCTAGTCTGGAAATTTATTTCTATGCCTTTCAGCACTATGTATTGTAATCTGCTCTTTCTGGTTCTTTTGGTGAATATGCATCTCTTTTTCTTATTAAAAAAAGCAATATCTATTGTAAAACTTTGATATTAATGTTGAACTTATCATGCATTTTTCTGCTGAAAGCACTGTTTTTAGCCTTTTGTTGTTAGCCTTGAGCTTTTATCTTATTTCTTTTCTGTAAAGATCAATAATTCAGTACACGTTTTAAAAATTCTCAGGTTCATTTGCTAACGATGGAGAGGCTGCTGCTTCTGAGAATTCTTCAGTACCAAGCAGCGTTTCTCTTGATGGTAGAAAATGGATTGACTTGTTTGTTGTGGAAATGATGAATGCAACCACGGTAGCTGATGCTAAGACTCGTGCAGCAAGAGCATTAGAAGCTTTAGAAAACTCAATTAGTGCACGTGCTGGTGTTGATGCTGCACAAAATTTCCACAAGGTATTTTAATTTTAATGCCCACAATTCCAAAAAATTTCCACATGCATGCTTGGGGGACAATTTTGGGATACTGACATATTTTTGGAGCATTTGATAGCAGTTAGAATTGGTTTGGGCTTACTTGCTTGTTAAACATGTTATTGCCATAAAGTAACGAGCCATGCTTGTAAAATTATTTTCTTTTCACTGTCACTCAGGAAAATATGCAACTGAAGGAACAAATTGAAGTACTTCTACGAGAAAATACAATTCTTAAGCGAGCAGTTGCCATACAACACGAACGTCAGAAGGAATTTGAGGATAAAAATCTAGAGTTGCAGCACCTTAAACAGTTGGTAGCTCAATATCAGGAGCAACTTAGAACCCTAGAGGTGAGAATATAAATGCAGAACGTTCTAAATATCTTCCCTTCTACCAACAGACCTGTTTTAAGTTTTTAAACATGTTGATGTTGATGCAACATTTTCTGACCAGTTGGAAAAAATTCTGTTTCTTTGGTTACAGATAAACAATTATGCATTGACAATGCATTTGAAGCAAGCTCAACAAAGCAGCTCAATGCCAGGACGCTTCCATCCTGATGTCTTCTAGCAAACAGGAATGTAAAGATCTAAATTATTGCTTGCAGAAAGAAACTAGTAGAGCGTGAGTGAGAGGAGGAAAGGGAGAGCAGGGAGGAATGGGAGCATGTTCATTACCGTCTCAGTTTCCTATGAATAGAGGTACTGTGTGCTGATCAGTGTGTTCGCTTAGTTTGAGTTTGGTCATATCGTCAACCTTGAATGGTTTGACTGCAACCACAAGCTTTGTTGTGAACTTCTATTGTTTCCCCCATAGCTTTCAATAAAAGTCTTTATTCAACTTCATGATTTTTGGCAGATGAAATTATTGTCATATGTTTTTTATAAACCCATTTGCAGAGTAATTTAAAATAACAACACAGAAGACGAGTTGAGGGTTATTATGTTTCCTCAATTATTCTGTCCGAAGTAAAGAAGGCAAGATGGCATGCAGTTTTGTTGTCCTGGTTTTGCTTTGGACATTGGTTTGTTCATATTGTGGCACAGCTCGAGGATTTTGGCGTCCTTGTGCCTTATTTTGTTTTTCATAGGTTTTGGGAAGTATCTTGTTAATTTTGAACTTCAGTGCTTCAAATGGCTTGTCTGATGAAGGAATGATTATAAGTACTTCTTATACCATGTGTAAGCAGTAGTGAGATTTCTATTTCTTGTTATAAGAATCTTTTATTTTTAGTGAACTGTGAAAAAGAGCCATTTGTGTTTGTAG

mRNA sequence

GCGCGAGTCCATATGTAAATAAGCCTCCTTCCATTGTAATTCGTAACGGTCCTCTCCTCTCCATTTCGAAGCTCGGTAGTCAGAAGAACCAAACCAACGAAACAAACTTCCCCTAAATCCCTCCCTTTTTGTTCCCTCTCTTCCTTCCCATTCCAAATTCCAAACCCTAGATTCTGCTTCACTCTCCTACAATGCCAACCATTTCTCCTCACTCAGAAAGGACTAAGATCGGTAACTTATGGCGTTTCAGCCGCTTCATTGATTACCGGTGTTTGGCTCCGGCTACGCTCGACGTTGATGCTGAATTTGACGCTCTCCACCGAAGGCCTTATCGCTTGCTTCCTCGACAGGATCTCATTGATCTCTTCGTCCTTAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTATCGCGCAATGGTACAGTAGCAGATCTTAAACGAGCGATTGAGGAAGTTTTTGATTCACCCGGGGGGAGTGAACACTGCAAGATTACATGGAGTTTTGTAATTTTATTGGGTTCTACATGCGAAAAGCTTATTGATGACAAGACATGCATTAGAGTTTTTGGGATTAAAGATGGTGATCAGCTTCAGTTTCTTAGGCATATGTCTATCAACTGTTTACCGATGAAGAGAGATAGGAAGAACCAAACTGCATCTTGCAAAACAATGCTGTTTCTCTCGCCAGAATCAAAATCTGTTGAAGAGAATCAACCTGCTGGTCAAGATGATGTTGAGAATTCTCAAGTTTGCAGGGAAAGTTCGAATCGAGAGGAGGTTGTTTCTATGGCTAGAGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGGAATTAGCTTCTGCGAGCCACTACCCGGAGACCATGTCTGCTGTGGTGTGCGGTACCAAGAGATCCTTCTTTGAAGAACTCCCGCCTTCCCCTCCCATTGCCAAGCGCCTCCGCTGCTCCACTTCTACTTCTCCAATTCGATTCGCTGCCCCTTCCCATATTGATCACCTCCAGCATTTGTTTCCCCACATGGACCATCAGTTGTGGCTGGAAATTGGAGTTGTTCTATCAGTTCTAATTTCTAATGCTTCTCTTTCGCTTCTTGTGAGAGCCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAGAAGTCTGAGTGACTTGTGTTTGGGGTCTGCCGTTGAGAATCCTGTTACTACTGCAGAACCAGAGACAAATTTGGATCAAGGTTCATTTGCTAACGATGGAGAGGCTGCTGCTTCTGAGAATTCTTCAGTACCAAGCAGCGTTTCTCTTGATGGTAGAAAATGGATTGACTTGTTTGTTGTGGAAATGATGAATGCAACCACGGTAGCTGATGCTAAGACTCGTGCAGCAAGAGCATTAGAAGCTTTAGAAAACTCAATTAGTGCACGTGCTGGTGTTGATGCTGCACAAAATTTCCACAAGGAAAATATGCAACTGAAGGAACAAATTGAAGTACTTCTACGAGAAAATACAATTCTTAAGCGAGCAGTTGCCATACAACACGAACGTCAGAAGGAATTTGAGGATAAAAATCTAGAGTTGCAGCACCTTAAACAGTTGGTAGCTCAATATCAGGAGCAACTTAGAACCCTAGAGATAAACAATTATGCATTGACAATGCATTTGAAGCAAGCTCAACAAAGCAGCTCAATGCCAGGACGCTTCCATCCTGATGTCTTCTAGCAAACAGGAATGTAAAGATCTAAATTATTGCTTGCAGAAAGAAACTAGTAGAGCGTGAGTGAGAGGAGGAAAGGGAGAGCAGGGAGGAATGGGAGCATGTTCATTACCGTCTCAGTTTCCTATGAATAGAGAGTAATTTAAAATAACAACACAGAAGACGAGTTGAGGGTTATTATGTTTCCTCAATTATTCTGTCCGAAGTAAAGAAGGCAAGATGGCATGCAGTTTTGTTGTCCTGGTTTTGCTTTGGACATTGGTTTGTTCATATTGTGGCACAGCTCGAGGATTTTGGCGTCCTTGTGCCTTATTTTGTTTTTCATAGGTTTTGGGAAGTATCTTGTTAATTTTGAACTTCAGTGCTTCAAATGGCTTGTCTGATGAAGGAATGATTATAAGTACTTCTTATACCATGTGTAAGCAGTAGTGAGATTTCTATTTCTTGTTATAAGAATCTTTTATTTTTAGTGAACTGTGAAAAAGAGCCATTTGTGTTTGTAG

Coding sequence (CDS)

ATGCCAACCATTTCTCCTCACTCAGAAAGGACTAAGATCGGTAACTTATGGCGTTTCAGCCGCTTCATTGATTACCGGTGTTTGGCTCCGGCTACGCTCGACGTTGATGCTGAATTTGACGCTCTCCACCGAAGGCCTTATCGCTTGCTTCCTCGACAGGATCTCATTGATCTCTTCGTCCTTAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTATCGCGCAATGGTACAGTAGCAGATCTTAAACGAGCGATTGAGGAAGTTTTTGATTCACCCGGGGGGAGTGAACACTGCAAGATTACATGGAGTTTTGTAATTTTATTGGGTTCTACATGCGAAAAGCTTATTGATGACAAGACATGCATTAGAGTTTTTGGGATTAAAGATGGTGATCAGCTTCAGTTTCTTAGGCATATGTCTATCAACTGTTTACCGATGAAGAGAGATAGGAAGAACCAAACTGCATCTTGCAAAACAATGCTGTTTCTCTCGCCAGAATCAAAATCTGTTGAAGAGAATCAACCTGCTGGTCAAGATGATGTTGAGAATTCTCAAGTTTGCAGGGAAAGTTCGAATCGAGAGGAGGTTGTTTCTATGGCTAGAGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGGAATTAGCTTCTGCGAGCCACTACCCGGAGACCATGTCTGCTGTGGTGTGCGGTACCAAGAGATCCTTCTTTGAAGAACTCCCGCCTTCCCCTCCCATTGCCAAGCGCCTCCGCTGCTCCACTTCTACTTCTCCAATTCGATTCGCTGCCCCTTCCCATATTGATCACCTCCAGCATTTGTTTCCCCACATGGACCATCAGTTGTGGCTGGAAATTGGAGTTGTTCTATCAGTTCTAATTTCTAATGCTTCTCTTTCGCTTCTTGTGAGAGCCCTTGAAGAATGTGGCAACGACTTGGATGCTGCCATCAGAAGTCTGAGTGACTTGTGTTTGGGGTCTGCCGTTGAGAATCCTGTTACTACTGCAGAACCAGAGACAAATTTGGATCAAGGTTCATTTGCTAACGATGGAGAGGCTGCTGCTTCTGAGAATTCTTCAGTACCAAGCAGCGTTTCTCTTGATGGTAGAAAATGGATTGACTTGTTTGTTGTGGAAATGATGAATGCAACCACGGTAGCTGATGCTAAGACTCGTGCAGCAAGAGCATTAGAAGCTTTAGAAAACTCAATTAGTGCACGTGCTGGTGTTGATGCTGCACAAAATTTCCACAAGGAAAATATGCAACTGAAGGAACAAATTGAAGTACTTCTACGAGAAAATACAATTCTTAAGCGAGCAGTTGCCATACAACACGAACGTCAGAAGGAATTTGAGGATAAAAATCTAGAGTTGCAGCACCTTAAACAGTTGGTAGCTCAATATCAGGAGCAACTTAGAACCCTAGAGATAAACAATTATGCATTGACAATGCATTTGAAGCAAGCTCAACAAAGCAGCTCAATGCCAGGACGCTTCCATCCTGATGTCTTCTAG

Protein sequence

MPTISPHSERTKIGNLWRFSRFIDYRCLAPATLDVDAEFDALHRRPYRLLPRQDLIDLFVLKLDGSVFGVRVSRNGTVADLKRAIEEVFDSPGGSEHCKITWSFVILLGSTCEKLIDDKTCIRVFGIKDGDQLQFLRHMSINCLPMKRDRKNQTASCKTMLFLSPESKSVEENQPAGQDDVENSQVCRESSNREEVVSMARAGFQLANFFRGRELASASHYPETMSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSISARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLVAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF

Homology

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BLAST of Clc07G11860 vs. NCBI nr
Match: XP_004152175.1 (uncharacterized protein LOC101208593 [Cucumis sativus] >KGN52939.1 hypothetical protein Csa_014914 [Cucumis sativus])

HSP 1 Score: 451.8 bits (1161), Expect = 7.6e-123
Identity = 244/279 (87.46%), Postives = 251/279 (89.96%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCG+KRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFP MD Q    
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPQMDRQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLVRALEECGNDLDAAIRSLSDLCLGSAVENPV +AEPETNLDQG
Sbjct: 61  ---------------LLVRALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           S AN+GE AASENSS  SSVSLDGRKWIDLFVVEM NATTVADAKTRAARALEALENSI+
Sbjct: 121 SIANNGEVAASENSS--SSVSLDGRKWIDLFVVEMTNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           ARA VDAAQNFHKENMQLKEQIE+L+RENTILKRAVAIQHERQKEFEDKNLELQHLKQLV
Sbjct: 181 ARASVDAAQNFHKENMQLKEQIELLVRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLKQAQQSSS+PGRFHPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKQAQQSSSIPGRFHPDVF 258

[Close]

BLAST of Clc07G11860 vs. NCBI nr
Match: XP_038896372.1 (uncharacterized protein LOC120084606 [Benincasa hispida])

HSP 1 Score: 448.7 bits (1153), Expect = 6.4e-122
Identity = 239/279 (85.66%), Postives = 249/279 (89.25%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCGTKRSFFEELPPS PIAKRLRCSTSTSPIRFAAPSHIDHL HLFP MDHQ    
Sbjct: 1   MSAVVCGTKRSFFEELPPSTPIAKRLRCSTSTSPIRFAAPSHIDHLHHLFPQMDHQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLV+ALEECGNDLDAAIR+LSD+CLGSAVENPV +AE ETNLDQG
Sbjct: 61  ---------------LLVKALEECGNDLDAAIRNLSDMCLGSAVENPVASAELETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           SF N+GEAAASENSS+PSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSI+
Sbjct: 121 SFTNNGEAAASENSSIPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           A+A VDAAQNFHKENMQLKE IEVL+RENTILKRAVAIQHERQKEFEDKNLELQH KQLV
Sbjct: 181 AQARVDAAQNFHKENMQLKEHIEVLVRENTILKRAVAIQHERQKEFEDKNLELQHFKQLV 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLK AQQSSS+PGR HPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKHAQQSSSIPGRVHPDVF 260

[Close]

BLAST of Clc07G11860 vs. NCBI nr
Match: XP_023528958.1 (uncharacterized protein LOC111791720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441.0 bits (1133), Expect = 1.3e-119
Identity = 237/280 (84.64%), Postives = 247/280 (88.21%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSH-IDHLQHLFPHMDHQLWL 284
           MSAVVCGTKRSFFEELPPSPPI+KRLRCS+STSPI F APS  IDHL HLFPHMDHQ   
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPISKRLRCSSSTSPITFPAPSSLIDHLHHLFPHMDHQ--- 60

Query: 285 EIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQ 344
                           LLVRALEECGNDLDAAI+SLSDLCLGSAVENPV TAEPE NLDQ
Sbjct: 61  ----------------LLVRALEECGNDLDAAIKSLSDLCLGSAVENPVATAEPEPNLDQ 120

Query: 345 GSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSI 404
           GSFANDGEAAASEN SVPSSVSLDGRKWIDLFVVEM++A  VADA++RAARALEALENSI
Sbjct: 121 GSFANDGEAAASENCSVPSSVSLDGRKWIDLFVVEMVSAIDVADARSRAARALEALENSI 180

Query: 405 SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL 464
           SA AGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFE KN+ELQHLKQL
Sbjct: 181 SASAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEGKNIELQHLKQL 240

Query: 465 VAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           V QYQEQLRTLEINNYALTMHLKQ +QSSS+PGRFHPDVF
Sbjct: 241 VCQYQEQLRTLEINNYALTMHLKQTEQSSSIPGRFHPDVF 261

[Close]

BLAST of Clc07G11860 vs. NCBI nr
Match: XP_022955509.1 (uncharacterized protein LOC111457514 [Cucurbita moschata])

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-119
Identity = 236/280 (84.29%), Postives = 247/280 (88.21%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSH-IDHLQHLFPHMDHQLWL 284
           MSAVVCGTKRSFFEE+PPSPPI+KRLRCS+STSPI F APS  IDHL HLFPHMDHQ   
Sbjct: 1   MSAVVCGTKRSFFEEIPPSPPISKRLRCSSSTSPITFPAPSSLIDHLHHLFPHMDHQ--- 60

Query: 285 EIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQ 344
                           LLVRALEECGNDLDAAI+SLSDLCLGSAVENPV TAEPE NLDQ
Sbjct: 61  ----------------LLVRALEECGNDLDAAIKSLSDLCLGSAVENPVATAEPEPNLDQ 120

Query: 345 GSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSI 404
           GSFANDGEAAASEN SVPSSVSLDGRKWIDLFVVEM++A  VADA++RAARALEALENSI
Sbjct: 121 GSFANDGEAAASENCSVPSSVSLDGRKWIDLFVVEMVSAIDVADARSRAARALEALENSI 180

Query: 405 SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL 464
           SA AGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFE KN+ELQHLKQL
Sbjct: 181 SASAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEGKNIELQHLKQL 240

Query: 465 VAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           V QYQEQLRTLEINNYALTMHLKQ +QSSS+PGRFHPDVF
Sbjct: 241 VCQYQEQLRTLEINNYALTMHLKQTEQSSSIPGRFHPDVF 261

[Close]

BLAST of Clc07G11860 vs. NCBI nr
Match: KAA0044479.1 (CUE domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-119
Identity = 241/279 (86.38%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCG+KRSFFEELPPSPPIAKR RC  STSPIRFAAPSHIDHLQHLFP MDHQ    
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRHRC--STSPIRFAAPSHIDHLQHLFPQMDHQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLVRALEECGNDLDAAIRSLSDLCLGSAVENPV +AEPETNLDQG
Sbjct: 61  ---------------LLVRALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           S A DGEAAASENSS  S+VSLDGRKWIDLFV EM NATTVADAKTRAARALEALENSI+
Sbjct: 121 SIAKDGEAAASENSS--STVSLDGRKWIDLFVGEMTNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           AR  VDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL+
Sbjct: 181 ARVSVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLL 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLKQAQQSSS+PGRFHPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKQAQQSSSIPGRFHPDVF 256

[Close]

BLAST of Clc07G11860 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-07
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNGTVADLKRAIEEVF----DSPGGSEHCKITWSFV---ILLGSTC 119
           V K+DG V  V V +N TV DLK+AI+       +  GG +H  I+WS+V     L S  
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIRVFGIKDGDQLQFLRHM 140
           EKL +D+  +R +GI++ D++ F++ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Clc07G11860 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-07
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNGTVADLKRAIEEVF----DSPGGSEHCKITWSFV---ILLGSTC 119
           V K+DG V  V V +N TV DLK+AI+       +  GG +H  I+WS+V     L S  
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIRVFGIKDGDQLQFLRHM 140
           EKL +D+  +R +GI++ D++ F++ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Clc07G11860 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-06
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVSRNGTVADLKRAIEEVF----DSPGGSEHCKITWSFV---ILLGSTC 119
           V K+DG V  V V ++ TV DLK+AI+       +  GG +H  I+WS+V     L S  
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKTCIRVFGIKDGDQLQFLRHM 140
           EKL +D+  +R +GI++ D++ F++ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Clc07G11860 vs. ExPASy TrEMBL
Match: A0A0A0KVN0 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006460 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 244/279 (87.46%), Postives = 251/279 (89.96%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCG+KRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFP MD Q    
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPQMDRQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLVRALEECGNDLDAAIRSLSDLCLGSAVENPV +AEPETNLDQG
Sbjct: 61  ---------------LLVRALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           S AN+GE AASENSS  SSVSLDGRKWIDLFVVEM NATTVADAKTRAARALEALENSI+
Sbjct: 121 SIANNGEVAASENSS--SSVSLDGRKWIDLFVVEMTNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           ARA VDAAQNFHKENMQLKEQIE+L+RENTILKRAVAIQHERQKEFEDKNLELQHLKQLV
Sbjct: 181 ARASVDAAQNFHKENMQLKEQIELLVRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLKQAQQSSS+PGRFHPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKQAQQSSSIPGRFHPDVF 258

[Close]

BLAST of Clc07G11860 vs. ExPASy TrEMBL
Match: A0A5A7TTC9 (CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002160 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119
Identity = 241/279 (86.38%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCG+KRSFFEELPPSPPIAKR RC  STSPIRFAAPSHIDHLQHLFP MDHQ    
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRHRC--STSPIRFAAPSHIDHLQHLFPQMDHQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLVRALEECGNDLDAAIRSLSDLCLGSAVENPV +AEPETNLDQG
Sbjct: 61  ---------------LLVRALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           S A DGEAAASENSS  S+VSLDGRKWIDLFV EM NATTVADAKTRAARALEALENSI+
Sbjct: 121 SIAKDGEAAASENSS--STVSLDGRKWIDLFVGEMTNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           AR  VDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL+
Sbjct: 181 ARVSVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLL 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLKQAQQSSS+PGRFHPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKQAQQSSSIPGRFHPDVF 256

[Close]

BLAST of Clc07G11860 vs. ExPASy TrEMBL
Match: A0A6J1GWH1 (uncharacterized protein LOC111457514 OS=Cucurbita moschata OX=3662 GN=LOC111457514 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119
Identity = 236/280 (84.29%), Postives = 247/280 (88.21%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSH-IDHLQHLFPHMDHQLWL 284
           MSAVVCGTKRSFFEE+PPSPPI+KRLRCS+STSPI F APS  IDHL HLFPHMDHQ   
Sbjct: 1   MSAVVCGTKRSFFEEIPPSPPISKRLRCSSSTSPITFPAPSSLIDHLHHLFPHMDHQ--- 60

Query: 285 EIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQ 344
                           LLVRALEECGNDLDAAI+SLSDLCLGSAVENPV TAEPE NLDQ
Sbjct: 61  ----------------LLVRALEECGNDLDAAIKSLSDLCLGSAVENPVATAEPEPNLDQ 120

Query: 345 GSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSI 404
           GSFANDGEAAASEN SVPSSVSLDGRKWIDLFVVEM++A  VADA++RAARALEALENSI
Sbjct: 121 GSFANDGEAAASENCSVPSSVSLDGRKWIDLFVVEMVSAIDVADARSRAARALEALENSI 180

Query: 405 SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL 464
           SA AGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFE KN+ELQHLKQL
Sbjct: 181 SASAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEGKNIELQHLKQL 240

Query: 465 VAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           V QYQEQLRTLEINNYALTMHLKQ +QSSS+PGRFHPDVF
Sbjct: 241 VCQYQEQLRTLEINNYALTMHLKQTEQSSSIPGRFHPDVF 261

[Close]

BLAST of Clc07G11860 vs. ExPASy TrEMBL
Match: A0A6J1IXF9 (uncharacterized protein LOC111480055 OS=Cucurbita maxima OX=3661 GN=LOC111480055 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 3.2e-119
Identity = 236/280 (84.29%), Postives = 246/280 (87.86%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSH-IDHLQHLFPHMDHQLWL 284
           MSAVVCGTKRSFFEELPPSPPI+KRLRCS+STSPI F APS  IDHL HLFPHMDHQ   
Sbjct: 1   MSAVVCGTKRSFFEELPPSPPISKRLRCSSSTSPITFPAPSSLIDHLHHLFPHMDHQ--- 60

Query: 285 EIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQ 344
                           LLVRALEECGNDLDAAI++LSDLCLGSAVENPV TAEPE NLDQ
Sbjct: 61  ----------------LLVRALEECGNDLDAAIKNLSDLCLGSAVENPVATAEPEPNLDQ 120

Query: 345 GSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSI 404
           GSFANDGEAAASEN SVPSSVSLDGRKWIDLFVVEM +A  VADA++RAARALEALENSI
Sbjct: 121 GSFANDGEAAASENCSVPSSVSLDGRKWIDLFVVEMASAIDVADARSRAARALEALENSI 180

Query: 405 SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL 464
           SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFE KN+ LQHLKQL
Sbjct: 181 SARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEGKNIGLQHLKQL 240

Query: 465 VAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           V QYQEQLRTLEINNYALTMHLKQ +QSSS+PGRFHPDVF
Sbjct: 241 VCQYQEQLRTLEINNYALTMHLKQTEQSSSIPGRFHPDVF 261

[Close]

BLAST of Clc07G11860 vs. ExPASy TrEMBL
Match: A0A5D3E120 (CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002170 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 3.2e-119
Identity = 240/279 (86.02%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRCSTSTSPIRFAAPSHIDHLQHLFPHMDHQLWLE 284
           MSAVVCG+KRSFFEELPPSPPIAKR RC  STSPIRFAAPSHIDHLQHLFP MDHQ    
Sbjct: 1   MSAVVCGSKRSFFEELPPSPPIAKRHRC--STSPIRFAAPSHIDHLQHLFPQMDHQ---- 60

Query: 285 IGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLDQG 344
                          LLVRALEECGNDLDAAIRSLSDLCLGSAVENPV +AEPETNLDQG
Sbjct: 61  ---------------LLVRALEECGNDLDAAIRSLSDLCLGSAVENPVASAEPETNLDQG 120

Query: 345 SFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENSIS 404
           S A DGEAA SENSS  S+VSLDGRKWIDLFV EM NATTVADAKTRAARALEALENSI+
Sbjct: 121 SIAKDGEAAVSENSS--STVSLDGRKWIDLFVGEMTNATTVADAKTRAARALEALENSIT 180

Query: 405 ARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLV 464
           AR  VDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQL+
Sbjct: 181 ARVSVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQLL 240

Query: 465 AQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           AQYQEQLRTLEINNYALTMHLKQAQQSSS+PGRFHPDVF
Sbjct: 241 AQYQEQLRTLEINNYALTMHLKQAQQSSSIPGRFHPDVF 256

[Close]

BLAST of Clc07G11860 vs. TAIR 10
Match: AT5G32440.3 (Ubiquitin system component Cue protein )

HSP 1 Score: 261.2 bits (666), Expect = 1.8e-69
Identity = 155/294 (52.72%), Postives = 199/294 (67.69%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEEL-PPSPPIAKRLRCSTSTSPIRFAAPSH------IDHLQHLFPHM 284
           MSA+VCG KRS FE+L   SPP++K+LRC +S+S  RF+ P        +DHL  +FP M
Sbjct: 1   MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 285 DHQLWLEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVEN------- 344
           D Q                   +L RA+EECG+DLD+AIR L+ L L SA +N       
Sbjct: 61  DKQ-------------------ILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQ 120

Query: 345 -PVTTAEPETNLDQGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAK 404
            PV   EP     Q      G +A  E    P+ ++LDG +W++LFV EMMNA+ + DAK
Sbjct: 121 SPVVIQEPNVEPQQ-----QGRSAKEE----PNVLNLDGTEWVELFVREMMNASDMKDAK 180

Query: 405 TRAARALEALENSISARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKE 464
            RAARALEALE SI+AR G DA QN  +ENM LK+Q+E +++EN++LKRAV  Q +RQ+E
Sbjct: 181 ARAARALEALEKSINARTGTDAMQNLQQENMMLKQQLEAIVQENSLLKRAVVTQQKRQRE 240

Query: 465 FEDKNLELQHLKQLVAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
            ED++ ELQHL+QLV QYQEQLRTLE+NNYALT+HLKQAQQ+SS+PGR+HPDVF
Sbjct: 241 SEDQSQELQHLRQLVTQYQEQLRTLEVNNYALTLHLKQAQQNSSIPGRYHPDVF 265

[Close]

BLAST of Clc07G11860 vs. TAIR 10
Match: AT5G32440.1 (Ubiquitin system component Cue protein )

HSP 1 Score: 260.0 bits (663), Expect = 3.9e-69
Identity = 154/294 (52.38%), Postives = 199/294 (67.69%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEEL-PPSPPIAKRLRCSTSTSPIRFAAPSH------IDHLQHLFPHM 284
           MSA+VCG KRS FE+L   SPP++K+LRC +S+S  RF+ P        +DHL  +FP M
Sbjct: 1   MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 285 DHQLWLEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVEN------- 344
           D Q                   +L RA+EECG+DLD+AIR L+ L L SA +N       
Sbjct: 61  DKQ-------------------ILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQ 120

Query: 345 -PVTTAEPETNLDQGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAK 404
            PV   EP     Q       + +A E    P+ ++LDG +W++LFV EMMNA+ + DAK
Sbjct: 121 SPVVIQEPNVEPQQ-------QGSAKEE---PNVLNLDGTEWVELFVREMMNASDMKDAK 180

Query: 405 TRAARALEALENSISARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKE 464
            RAARALEALE SI+AR G DA QN  +ENM LK+Q+E +++EN++LKRAV  Q +RQ+E
Sbjct: 181 ARAARALEALEKSINARTGTDAMQNLQQENMMLKQQLEAIVQENSLLKRAVVTQQKRQRE 240

Query: 465 FEDKNLELQHLKQLVAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
            ED++ ELQHL+QLV QYQEQLRTLE+NNYALT+HLKQAQQ+SS+PGR+HPDVF
Sbjct: 241 SEDQSQELQHLRQLVTQYQEQLRTLEVNNYALTLHLKQAQQNSSIPGRYHPDVF 264

[Close]

BLAST of Clc07G11860 vs. TAIR 10
Match: AT1G80040.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1). )

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-49
Identity = 127/281 (45.20%), Postives = 173/281 (61.57%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRC-STSTSPIRFAAP-SHIDHLQHLFPHMDHQLW 284
           MSAV CGTKRS+F++   SPP +KR RC S S SPI  + P S +D L   FPH      
Sbjct: 1   MSAVYCGTKRSYFDD-NSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPH------ 60

Query: 285 LEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLD 344
           +E+ V   + +S A   +LV+ALE+ G+D +AA++SL      S   +    AE      
Sbjct: 61  IELTVASKIHVSVA--QVLVKALEDNGSDFNAAMKSLY-----SFASSEEKKAE------ 120

Query: 345 QGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENS 404
               A  G A    ++    +    G  W++L V E++ ++   DAK RAAR LEALE  
Sbjct: 121 --ELAAGGAATQETDAVCGGNPPTSGDDWVELLVREVLQSSGTDDAKVRAARVLEALEKM 180

Query: 405 ISARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQ 464
           +SARA  +A   F +E + +++Q+E L+++NT+LKRAVAIQHERQK  ED N +L  LKQ
Sbjct: 181 LSARAREEAGNKFQEEKVAVQQQVETLVKDNTVLKRAVAIQHERQKALEDANHQLGLLKQ 240

Query: 465 LVAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           LV QYQE+LR LE+NNYAL M L+Q +  +SMP RF+PDVF
Sbjct: 241 LVPQYQEKLRNLEVNNYALRMQLQQVEHGNSMPARFNPDVF 259

[Close]

BLAST of Clc07G11860 vs. TAIR 10
Match: AT1G80040.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-48
Identity = 124/281 (44.13%), Postives = 169/281 (60.14%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEELPPSPPIAKRLRC-STSTSPIRFAAP-SHIDHLQHLFPHMDHQLW 284
           MSAV CGTKRS+F++   SPP +KR RC S S SPI  + P S +D L   FPH++    
Sbjct: 1   MSAVYCGTKRSYFDD-NSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPHIE---- 60

Query: 285 LEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVENPVTTAEPETNLD 344
                          L++LV+ALE+ G+D +AA++SL      S   +    AE      
Sbjct: 61  ---------------LTVLVKALEDNGSDFNAAMKSLY-----SFASSEEKKAE------ 120

Query: 345 QGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAKTRAARALEALENS 404
               A  G A    ++    +    G  W++L V E++ ++   DAK RAAR LEALE  
Sbjct: 121 --ELAAGGAATQETDAVCGGNPPTSGDDWVELLVREVLQSSGTDDAKVRAARVLEALEKM 180

Query: 405 ISARAGVDAAQNFHKENMQLKEQIEVLLRENTILKRAVAIQHERQKEFEDKNLELQHLKQ 464
           +SARA  +A   F +E + +++Q+E L+++NT+LKRAVAIQHERQK  ED N +L  LKQ
Sbjct: 181 LSARAREEAGNKFQEEKVAVQQQVETLVKDNTVLKRAVAIQHERQKALEDANHQLGLLKQ 240

Query: 465 LVAQYQEQLRTLEINNYALTMHLKQAQQSSSMPGRFHPDVF 504
           LV QYQE+LR LE+NNYAL M L+Q +  +SMP RF+PDVF
Sbjct: 241 LVPQYQEKLRNLEVNNYALRMQLQQVEHGNSMPARFNPDVF 248

[Close]

BLAST of Clc07G11860 vs. TAIR 10
Match: AT5G32440.2 (Ubiquitin system component Cue protein )

HSP 1 Score: 137.1 bits (344), Expect = 3.9e-32
Identity = 94/214 (43.93%), Postives = 124/214 (57.94%), Query Frame = 0


Query: 225 MSAVVCGTKRSFFEEL-PPSPPIAKRLRCSTSTSPIRFAAPSH------IDHLQHLFPHM 284
           MSA+VCG KRS FE+L   SPP++K+LRC +S+S  RF+ P        +DHL  +FP M
Sbjct: 1   MSAIVCG-KRSLFEDLAAASPPVSKKLRCFSSSSSSRFSPPIPPSSSLLLDHLAAIFPDM 60

Query: 285 DHQLWLEIGVVLSVLISNASLSLLVRALEECGNDLDAAIRSLSDLCLGSAVEN------- 344
           D Q                   +L RA+EECG+DLD+AIR L+ L L SA +N       
Sbjct: 61  DKQ-------------------ILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQ 120

Query: 345 -PVTTAEPETNLDQGSFANDGEAAASENSSVPSSVSLDGRKWIDLFVVEMMNATTVADAK 404
            PV   EP     Q       + +A E    P+ ++LDG +W++LFV EMMNA+ + DAK
Sbjct: 121 SPVVIQEPNVEPQQ-------QGSAKEE---PNVLNLDGTEWVELFVREMMNASDMKDAK 180

Query: 405 TRAARALEALENSISARAGVDAAQNFHKENMQLK 424
            RAARALEALE SI+AR G DA QN  ++ +  K
Sbjct: 181 ARAARALEALEKSINARTGTDAMQNLQQKLLYRK 184

The following BLAST results are available for this feature:

BLAST of Clc07G11860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152175.1	7.6e-123	87.46	uncharacterized protein LOC101208593 [Cucumis sativus] >KGN52939.1 hypothetical ...	[more]
XP_038896372.1	6.4e-122	85.66	uncharacterized protein LOC120084606 [Benincasa hispida]	[more]
XP_023528958.1	1.3e-119	84.64	uncharacterized protein LOC111791720 [Cucurbita pepo subsp. pepo]	[more]
XP_022955509.1	2.3e-119	84.29	uncharacterized protein LOC111457514 [Cucurbita moschata]	[more]
KAA0044479.1	2.3e-119	86.38	CUE domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc07G11860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZBQ4	4.2e-07	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q8VIK1	4.2e-07	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q9BV90	1.6e-06	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Clc07G11860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVN0	3.7e-123	87.46	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006460 PE=4 SV...	[more]
A0A5A7TTC9	1.1e-119	86.38	CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A6J1GWH1	1.1e-119	84.29	uncharacterized protein LOC111457514 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]
A0A6J1IXF9	3.2e-119	84.29	uncharacterized protein LOC111480055 OS=Cucurbita maxima OX=3661 GN=LOC111480055...	[more]
A0A5D3E120	3.2e-119	86.02	CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Clc07G11860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G32440.3	1.8e-69	52.72	Ubiquitin system component Cue protein	[more]
AT5G32440.1	3.9e-69	52.38	Ubiquitin system component Cue protein	[more]
AT1G80040.3	1.6e-49	45.20	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G80040.1	1.0e-48	44.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G32440.2	3.9e-32	43.93	Ubiquitin system component Cue protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 412..439
None	No IPR available	COILS	Coil	Coil	coord: 450..477
None	No IPR available	GENE3D	3.10.20.90		coord: 52..146 e-value: 3.0E-19 score: 70.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..187
None	No IPR available	PANTHER	PTHR31245	UBIQUITIN SYSTEM COMPONENT CUE PROTEIN	coord: 225..281 coord: 291..503
None	No IPR available	PANTHER	PTHR31245:SF20	F18B13.13 PROTEIN	coord: 225..281 coord: 291..503
None	No IPR available	CDD	cd14279	CUE	coord: 267..319 e-value: 1.01773E-4 score: 37.833
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..138 e-value: 2.8E-12 score: 46.5
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 53..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G11860.2	Clc07G11860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043130	ubiquitin binding