Clc07G11730 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G11730
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionethylene-responsive transcription factor LEP-like
LocationClcChr07: 26552311 .. 26556061 (+)
RNA-Seq ExpressionClc07G11730
SyntenyClc07G11730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATTGGTCCACTGCCTCCTCCTCTTCCTCTTCCTCGTTTATGGGATTCGATTCAAACGTGGTTTTGCCACCCTTCCCTGACACCGGTGCCGACGCCTTCGGATTCGGTTCCTCATCCACCTACTTCTATTGAGCTATATATATATATATATATATCATCATCATTTTCTACCTTCATCATCAGTTTAATATGTTGTTTAAGCTACAAGAGGTGTGTGTGTTTTTGTTTTTTTTCTTTTTCTTTTCTAATGGAATGGCGGCACCCAAGCTCAGAAACTGTCTGATGTTATATATATTTTTATATTTTTATATTTTTGGAGGATATCAGTATACTATAACCCACTGCCCAACTCGGTGTGTACTTGTAACAATTGTTCAACATTGCATTACCAGTTTTAAATTATTTTCTCTCACACGGTTTCATTATTTTTCCCATATTCTGTAAGTGTATATACATTTTTTATCTCTTTATTATATTATGAATTCTATAGTAATTAAAAATAATAATAATAATTGAATTGTCAATTTAACTACAATTTGTCACGTAATAAACCCTTTTTTTTCTTATTTTTCTTAGATATATTTTGGAGTGAACAATTGGGGTGGACTGCATAGGTTGTGCAACCTATGTATTAGCTCTTATAATAACAATAATAATATATTCATACATTTTGTATTCTTTTGATTTGATAGACTTCTCATTTTCAAAAGAAAAAGAAAAAAAAAAATGGTAACTATTTACTTTCTCTTTCCCCTTTTGAAAAGGGTCATAGGAAATAAAGTAAAGTGATTCTGGTTTTTCTTTTGCTCTTTGCACTAATTGATCTATATATATCTAATGAACACTTTTTAATAGAATGAAACTGTTTTATTGGATTATTTCGTTTGGAAGAATCTTTTAATGGATCGATTGAGATTTTATAAAGAAAAAATAGTTCAAACTTATAATTGAGATGTTTGTGGAATAATGTGTGGGTCAATCATTGAAAAATGGCTTCAAACATACAAGGCCAGGTGGTTTGGTGTCTCAATTGTTGGCTAAACTAAATATTGTAAATGGAGGGTTCCATCACATCTCATATACATTCTGCCCCCATGACTTCCAAACTAATGATAAAATAGGAAGCAATTGCTGGATGGGATGAAAATTTCCTGTGAATTCTCTAGCTCGAAAGAAACAATCGCATTTTCAATAACATTTAACATAGTAGAGCACGAATTTAAGAGGAAATCATCTCTATTGTTAGTCTTTAATCTACTTGATCAAAGCTCTTTCCAAACTACAATTCCTTCCTCTCTATTGTGTTTAATATTGAAAGTTTATTGTAACTCTCCGGCTTTAGTATGTTACTAACATACCCATTAATGAAGTATCTTTTTTCTTAAATTAGCTAGGGTCAATGTAAAAAATAATGCTTCATATTGAGATCAATGAAATCAACCATTACAACGATAACCAATACTCGCGCGTAGCTTAGACTACCCAACCTCCCCATTTTTTTAGTTCAATTCTAAGTATCAATAAATAAATAATCTTTTTAAGAAAAGAAGAATACAAATGTTTATCACATAGCAAAGAGAGGTGTTCCAATAGAATGACACCATGTATTTGGTCGTCACCTATAGCATTAAATGCAGTTATGTCATCTTGTTAGTAATTCTTTTAATTGAAAAGAAAAACCATTGCCTCTACTACAAGACAAAGACAAGCTCAAGAAATGACTATGCTGCTATTTGGAGGATGGATTTTGGTAGGTTTGGAATGAGTTAGATTGTAATCCAATTACAAGTTCATGATTGTTTATATTGTAATGGACCATGATTGTAAAGGTCCATTACAATTCAACCACTAATGCAACCCCTTTTTAATTATAATCTCATGCCAATGCCAGCTTTCTCATTTCTCATACGTTTTTGCTGCTGCAACTCTGGCCACCTCTGACAATTATCACTAATAACCACCTTCAATAACAACTCACTATCAATTCTGGTGGTGATCACGTCCTGGACGACCAATTCATGCGACCATTATTTTAAATTATTAGTTTATAGTTTTATAGTCACGCTTTATAGTAATTTGACAATATCAAAAACACTTTTAGTGTATAATAGGCCAAACAAACTTACATTTAAAAATACTTTTGAGAAAAATTGCAAAACACAAAGTGTTTTTATTTTGAACAATTTTTACCACAAGTATTTAAATAAAAATGAATTTTTAAAAACCATTTTTTTCCTAAGTCAATCCAAACATGCCCTTAAATTTAACCAAATTTTAACTTTGAGCCAAGTCAAACTTCCATTTTCCTTCTTAGATTTCAAATATCCCAATATCATCCCCAAATCTTTTATCAAGAAAATAGAAAAAAAAATCTAAATAAAATAATTATCTTCTCCAATAAACTCAATTTTGGCTCTAAAAATAAAAACTTACATTAAATTCTCAAAATCATGAACTCGAGACTTACATTAAAATCTTGAATCTGAAAATTTGAAAACTAAAATATGATAATTTAATCTATTTTAAATCTAATTTATTTGTATAGTAGATTTCAAACATCCATTATCCATTTGATAGTCAAATTAAGCCAAAATTTAATTCCATCTAAACCACAACTTAGTCTAAAATAAGCAACCAAGATGAAATCTAAAATTAAATTTGAATCGATGGAAAAGTAACTATTTCTGAACAGTCGAGGTGTTACATAAAAGTTTATCTAATTAGGATAACCTTACAAATAATATGTCACAAATAATATGATGTAGTAAACAGATATACAACTCAACCTAATCTTGCAATTCCAAACACAATAATTATAAACCCACCAAACTCAACCCTGCACTCTAAATTAGTAGAGTTGGAAAGGCATGCACATTAAAAATAAATTTTATTTAATTTTTAGATTTTAAAAATAAAGTTTATAAATATCTATTTTACCTCTAAATTTCTTGATTTATTATACTTTCAATAATATGGGGTTTCATTTCAAAACCAATTCGAATGAAAGGAGTAGCTCATCTATTTTATAAGGAGTGTGAGGTCCCTTGGTTCTTCCAATATGGAATTTTCAACACTTTCTACCAATGTTTTCAAAAACCAAGTCAACAAGAAAACTAAAAAGATTTTTAAAACATGATTTTTGTTTTTGGAATTTAGCTAAGAATTCAACTTTTTTATTCAAGAAAGATAAAAATTATTCTAAGAAATTGAGAGAAAATAAGCTTAATTTTGATTTTTAATTTTTGAAAAATGGATACGTTTGGTTACAAATTGGTTCAAATCCTAATTGGTACAATTTCTTTTTTACACTTTTTATATGAAATTATATGGAAAATATTGTTATATATACTTTGTTATACACTTCATTTCTACATCATATCTCTTTCTTTTTTTTCTTTTTTTTTTTTTATTTAATAGGAGTAAGGTGTCTATGCCAGTACCCCCATTCCGGGTATCTCATACCGATTGGGGGTTTAAAATAAGTCAAGTTGGCTGGGGCTTGATTTTGATAATATTAGAAAGTCTTCGAGAATCTTTCTAGGTAGATAGGACGACTCCTGCTTGTTTTTGTCGCTCGGCGGCCGACGGTTGTTACAGTCGGCGCTCTGCGTTCATGATACTGGGGTGGGCTTCATTGATATTAAGGTGGCAAAGCGGTCGGGAATTGGCCCACGATGAATCCTATGTCCGAGGCACTTCAAGGCACATTGTCAGCCCTAAGATTTTGGGCAGTGAGTTCCGATGA

mRNA sequence

ATGATTGATTGGTCCACTGCCTCCTCCTCTTCCTCTTCCTCGTTTATGGGATTCGATTCAAACGTGGTTTTGCCACCCTTCCCTGACACCGGTGCCGACGCCTTCGGATTCGATAGGACGACTCCTGCTTGTTTTTGTCGCTCGGCGGCCGACGGTTGTTACAGTCGGCGCTCTGCGTTCATGATACTGGGGTGGGCTTCATTGATATTAAGGTGGCAAAGCGGTCGGGAATTGGCCCACGATGAATCCTATGTCCGAGGCACTTCAAGGCACATTGTCAGCCCTAAGATTTTGGGCAGTGAGTTCCGATGA

Coding sequence (CDS)

ATGATTGATTGGTCCACTGCCTCCTCCTCTTCCTCTTCCTCGTTTATGGGATTCGATTCAAACGTGGTTTTGCCACCCTTCCCTGACACCGGTGCCGACGCCTTCGGATTCGATAGGACGACTCCTGCTTGTTTTTGTCGCTCGGCGGCCGACGGTTGTTACAGTCGGCGCTCTGCGTTCATGATACTGGGGTGGGCTTCATTGATATTAAGGTGGCAAAGCGGTCGGGAATTGGCCCACGATGAATCCTATGTCCGAGGCACTTCAAGGCACATTGTCAGCCCTAAGATTTTGGGCAGTGAGTTCCGATGA

Protein sequence

MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGFDRTTPACFCRSAADGCYSRRSAFMILGWASLILRWQSGRELAHDESYVRGTSRHIVSPKILGSEFR
Homology
[Close]
BLAST of Clc07G11730 vs. NCBI nr
Match: XP_038877958.1 (ethylene-responsive transcription factor LEP-like [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGFDRTTP 43
           MIDWSTAS SSSSSFM FDSN VLPPFPDT  DAFGF  ++P
Sbjct: 191 MIDWSTASPSSSSSFMAFDSNAVLPPFPDTSTDAFGFGSSSP 232

[Close]
BLAST of Clc07G11730 vs. NCBI nr
Match: XP_022956066.1 (ethylene-responsive transcription factor LEP-like [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGFDRTT 42
           MIDW   SSSSSSSF+GFDSN  LPPFPD   DAFGFD ++
Sbjct: 193 MIDW---SSSSSSSFIGFDSNAPLPPFPDANNDAFGFDSSS 230

[Close]
BLAST of Clc07G11730 vs. NCBI nr
Match: XP_004152327.1 (ethylene-responsive transcription factor LEP [Cucumis sativus] >KGN52951.1 hypothetical protein Csa_014961 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTG-ADAFGF 38
           M+DWSTASSSS+SSFMGF+SN V P FPDT  +D FGF
Sbjct: 182 MVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGF 219

[Close]
BLAST of Clc07G11730 vs. NCBI nr
Match: XP_023528971.1 (ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGF 38
           MIDW   SSSSSSSF+GFDSN  LPPFPDT  DAFGF
Sbjct: 194 MIDW---SSSSSSSFIGFDSNTPLPPFPDTNNDAFGF 227

[Close]
BLAST of Clc07G11730 vs. NCBI nr
Match: XP_022980062.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGF 38
           MIDW   SSSSSSSF+GFDSN  LPPFPDT  D+FGF
Sbjct: 193 MIDW---SSSSSSSFIGFDSNAPLPPFPDTNTDSFGF 226

[Close]
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match: A0A6J1GVK2 (ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 GN=LOC111457873 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGFDRTT 42
           MIDW   SSSSSSSF+GFDSN  LPPFPD   DAFGFD ++
Sbjct: 193 MIDW---SSSSSSSFIGFDSNAPLPPFPDANNDAFGFDSSS 230

[Close]
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match: A0A0A0KYM7 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.4e-05
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTG-ADAFGF 38
           M+DWSTASSSS+SSFMGF+SN V P FPDT  +D FGF
Sbjct: 182 MVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGF 219

[Close]
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match: A0A6J1IQE0 (ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN=LOC111479578 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGADAFGF 38
           MIDW   SSSSSSSF+GFDSN  LPPFPDT  D+FGF
Sbjct: 193 MIDW---SSSSSSSFIGFDSNAPLPPFPDTNTDSFGF 226

[Close]
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match: A0A1S3BXG1 (ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC103494646 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MIDWSTASSSSSSSFMGFDSNVVLPPFPDTGAD-AFGF 38
           M+DWSTA  SSSSSFMGF+SN V PPFPDT +D +FGF
Sbjct: 183 MVDWSTA--SSSSSFMGFNSNAVFPPFPDTSSDGSFGF 218

The following BLAST results are available for this feature:
BLAST of Clc07G11730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877958.12.2e-0878.57ethylene-responsive transcription factor LEP-like [Benincasa hispida][more]
XP_022956066.18.5e-0570.73ethylene-responsive transcription factor LEP-like [Cucurbita moschata][more]
XP_004152327.11.1e-0473.68ethylene-responsive transcription factor LEP [Cucumis sativus] >KGN52951.1 hypot... [more]
XP_023528971.11.9e-0478.38ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo][more]
XP_022980062.12.5e-0475.68ethylene-responsive transcription factor LEP-like [Cucurbita maxima][more]
BLAST of Clc07G11730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GVK24.1e-0570.73ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 ... [more]
A0A0A0KYM75.4e-0573.68AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=... [more]
A0A6J1IQE01.2e-0475.68ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A1S3BXG13.5e-0473.68ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of Clc07G11730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G11730.1Clc07G11730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity