Clc07G11290 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G11290
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr07: 25944523 .. 25944849 (-)
RNA-Seq ExpressionClc07G11290
SyntenyClc07G11290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATTGCGTGGAAGTATTGTCGAGGCAGCGGGAAGAAGAAGAAGAAGAAGAAGGAAGGACGGCGACGGAGATGGAGATGGAAGAGAAAGAAAAGAAAGGAAAAATGAGAATAAAAGTAGTGTTGACTAAAGAGGAATTGCAGTGGCTAATGGAGCAAATAAAGGAAAGAGGAGGGAAAGGATTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAAAAGTATTGAATTGTAGTATTGATGTTAATAATGCTTCTTGGAGACCTTCTTTGGAGAGTATTATGGAATGCCCTGAAATTCCTGATCACATGCAGAGATAG

mRNA sequence

ATGGGCAATTGCGTGGAAGTATTGTCGAGGCAGCGGGAAGAAGAAGAAGAAGAAGAAGGAAGGACGGCGACGGAGATGGAGATGGAAGAGAAAGAAAAGAAAGGAAAAATGAGAATAAAAGTAGTGTTGACTAAAGAGGAATTGCAGTGGCTAATGGAGCAAATAAAGGAAAGAGGAGGGAAAGGATTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAAAAGTATTGAATTGTAGTATTGATGTTAATAATGCTTCTTGGAGACCTTCTTTGGAGAGTATTATGGAATGCCCTGAAATTCCTGATCACATGCAGAGATAG

Coding sequence (CDS)

ATGGGCAATTGCGTGGAAGTATTGTCGAGGCAGCGGGAAGAAGAAGAAGAAGAAGAAGGAAGGACGGCGACGGAGATGGAGATGGAAGAGAAAGAAAAGAAAGGAAAAATGAGAATAAAAGTAGTGTTGACTAAAGAGGAATTGCAGTGGCTAATGGAGCAAATAAAGGAAAGAGGAGGGAAAGGATTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAAAAGTATTGAATTGTAGTATTGATGTTAATAATGCTTCTTGGAGACCTTCTTTGGAGAGTATTATGGAATGCCCTGAAATTCCTGATCACATGCAGAGATAG

Protein sequence

MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGGKGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHMQR
Homology
BLAST of Clc07G11290 vs. NCBI nr
Match: KGN53406.1 (hypothetical protein Csa_015211 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-30
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSRQREE+      T +  EMEE+EKKG MRIKVVL KEEL+WL EQIKE+GG
Sbjct: 1   MGNCVEVLSRQREEDGTT--TTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGG 60

Query: 61  KGLEELLEEIERGRRK--VLNCSIDVNNASWRPSLESIMECPEIPDHMQR 109
           K LEELLEEIERGRR+  V+NCSI   N SW+PSLESIMECPEIPDHM R
Sbjct: 61  KCLEELLEEIERGRREKTVMNCSIQY-NVSWKPSLESIMECPEIPDHMFR 107

BLAST of Clc07G11290 vs. NCBI nr
Match: XP_022942038.1 (uncharacterized protein LOC111447226 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 75/106 (70.75%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSR+REEEE     TAT   ME++E+KG++RIKVVLTKEELQWLMEQ++ERGG
Sbjct: 1   MGNCVEVLSRRREEEEMT--TTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGG 60

Query: 61  KGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHM 107
           KGLEELL EIE GRRK +N      + SWRPSLESIME PE+PD M
Sbjct: 61  KGLEELLGEIE-GRRKKVN-----EDGSWRPSLESIMEVPEVPDRM 98

BLAST of Clc07G11290 vs. NCBI nr
Match: XP_023543788.1 (uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-25
Identity = 74/107 (69.16%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSR+REEE      T T ME E  E+KG +RIKVVLTKEELQWLMEQ++ERGG
Sbjct: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKE--ERKGGVRIKVVLTKEELQWLMEQVQERGG 60

Query: 61  KGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHMQ 108
           KGLEELL EIER RRKV        + SWRPSLESIME PE+PD M+
Sbjct: 61  KGLEELLGEIERRRRKV------DEDGSWRPSLESIMEVPEVPDRME 99

BLAST of Clc07G11290 vs. NCBI nr
Match: KAG6600517.1 (hypothetical protein SDJN03_05750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSR+ EEEE     T T ME EE+ K G +RIKVVLTKEELQWLMEQ++ERGG
Sbjct: 1   MGNCVEVLSRRSEEEETTTTGTTTMMEKEER-KGGGVRIKVVLTKEELQWLMEQVQERGG 60

Query: 61  KGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHMQ 108
           KGLEELL EIE GRRK +N      + SWRPSLESIME PE+PD M+
Sbjct: 61  KGLEELLGEIE-GRRKKVN-----EDGSWRPSLESIMEVPEVPDRME 100

BLAST of Clc07G11290 vs. NCBI nr
Match: KAG7031156.1 (hypothetical protein SDJN02_05196, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSR+ EEEE     T T ME EE+ K G +RIKVVLTKEELQWLMEQ++ERGG
Sbjct: 1   MGNCVEVLSRRSEEEETTTTGTTTMMEKEER-KGGGVRIKVVLTKEELQWLMEQVQERGG 60

Query: 61  KGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHMQ 108
           KGLEELL EIE GRRK +N      + SWRPSLESIME PE+ D M+
Sbjct: 61  KGLEELLGEIE-GRRKKVN-----EDGSWRPSLESIMEVPEVLDRME 100

BLAST of Clc07G11290 vs. ExPASy TrEMBL
Match: A0A0A0KZU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSRQREE+      T +  EMEE+EKKG MRIKVVL KEEL+WL EQIKE+GG
Sbjct: 1   MGNCVEVLSRQREEDGTT--TTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGG 60

Query: 61  KGLEELLEEIERGRRK--VLNCSIDVNNASWRPSLESIMECPEIPDHMQR 109
           K LEELLEEIERGRR+  V+NCSI   N SW+PSLESIMECPEIPDHM R
Sbjct: 61  KCLEELLEEIERGRREKTVMNCSIQY-NVSWKPSLESIMECPEIPDHMFR 107

BLAST of Clc07G11290 vs. ExPASy TrEMBL
Match: A0A6J1FTR3 (uncharacterized protein LOC111447226 OS=Cucurbita moschata OX=3662 GN=LOC111447226 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 75/106 (70.75%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVEVLSR+REEEE     TAT   ME++E+KG++RIKVVLTKEELQWLMEQ++ERGG
Sbjct: 1   MGNCVEVLSRRREEEEMT--TTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGG 60

Query: 61  KGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEIPDHM 107
           KGLEELL EIE GRRK +N      + SWRPSLESIME PE+PD M
Sbjct: 61  KGLEELLGEIE-GRRKKVN-----EDGSWRPSLESIMEVPEVPDRM 98

BLAST of Clc07G11290 vs. ExPASy TrEMBL
Match: A0A6J1C443 (uncharacterized protein LOC111008308 OS=Momordica charantia OX=3673 GN=LOC111008308 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWLMEQIKERGG 60
           MGNCVE + +  E  EE           E+KE KG MRIKVVLTKEEL+WLME I ERGG
Sbjct: 1   MGNCVEAVWKPEEAAEE-----------EKKEMKGGMRIKVVLTKEELEWLMEHINERGG 60

Query: 61  KGLEELLEE--IERGR--RKVLNC-SIDVN-NASWRPSLESIMECPEIPDHMQR 109
           + LE+LLEE  IERGR  RKV++  ++D N +ASW+PSLESI+ECPE+PDHMQR
Sbjct: 61  RNLEDLLEEIQIERGRRSRKVISREALDFNTSASWKPSLESIVECPELPDHMQR 103

BLAST of Clc07G11290 vs. ExPASy TrEMBL
Match: A0A6P4AMG6 (uncharacterized protein LOC107430133 OS=Ziziphus jujuba OX=326968 GN=LOC107430133 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 1   MGNCVEV---------LSRQREEEEEEEGRTATEMEMEEKEKKGKMRIKVVLTKEELQWL 60
           MGNC+E          + RQ ++EEEE+ R  +    E    K  MR+K+V+TKEEL+WL
Sbjct: 1   MGNCMETWKQGQKTEEMQRQNQQEEEEKERRGSGFVKESSLGKNSMRVKIVVTKEELEWL 60

Query: 61  MEQIKERGGKGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEI 103
           M Q+K +GGK LE++LEEIER R K            W+PSLESIMECPE+
Sbjct: 61  MLQLKNKGGKSLEDVLEEIERSREKA---------EGWKPSLESIMECPEV 102

BLAST of Clc07G11290 vs. ExPASy TrEMBL
Match: A0A6P5TQH7 (uncharacterized protein LOC110769682 OS=Prunus avium OX=42229 GN=LOC110769682 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 1   MGNCVEV----------LSRQREEEEEEEGRTATEMEMEEK-EKKGKMRIKVVLTKEELQ 60
           MGNCVE           + +Q+ E+EE +       E E    K G +R+K+VLTKEEL+
Sbjct: 1   MGNCVETCTERQQGEDQMQQQKHEQEERQNEIRFVKEKESNLSKDGNIRVKIVLTKEELE 60

Query: 61  WLMEQIKERGGKGLEELLEEIERGRRKVLNCSIDVNNASWRPSLESIMECPEI 103
           WLM Q+K+RGGK LE++LEEI+R R KV           W+PSLESIMECPE+
Sbjct: 61  WLMLQLKDRGGKSLEDVLEEIQRSRAKV--------EEGWKPSLESIMECPEV 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53406.14.7e-3074.55hypothetical protein Csa_015211 [Cucumis sativus][more]
XP_022942038.11.2e-2570.75uncharacterized protein LOC111447226 [Cucurbita moschata][more]
XP_023543788.14.6e-2569.16uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo][more]
KAG6600517.12.3e-2469.16hypothetical protein SDJN03_05750, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031156.13.3e-2368.22hypothetical protein SDJN02_05196, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZU92.3e-3074.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1[more]
A0A6J1FTR35.8e-2670.75uncharacterized protein LOC111447226 OS=Cucurbita moschata OX=3662 GN=LOC1114472... [more]
A0A6J1C4431.1e-2161.40uncharacterized protein LOC111008308 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6P4AMG64.6e-1547.75uncharacterized protein LOC107430133 OS=Ziziphus jujuba OX=326968 GN=LOC10743013... [more]
A0A6P5TQH71.3e-1447.79uncharacterized protein LOC110769682 OS=Prunus avium OX=42229 GN=LOC110769682 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR35704:SF1OS02G0254600 PROTEINcoord: 1..107
NoneNo IPR availablePANTHERPTHR35704OS02G0254600 PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G11290.1Clc07G11290.1mRNA