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Clc07G09730 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAGAGGGTTAGAAAAGTTTGTTTTGAAAAATCAGGTTAAATTTCATATTTTCAAAAAAATAGAAGGCCAAATGTAAAAAGTTTCTATAGTTTTAAGGCTATTTTCCCGAAACATCATTTCCTTTATTGATTTCACACTCTTCCCCCCACTTGATTTTGCATTTCATCGTTTTTCTTTTTCTCACATTCCTCGCAGTAACTCTCTCTCTTCCCCTTCTCTGTTCTTCTTCTTCTTCTTCTTCATCTTCGTCCATAAAGTTTGAGTTAAATCGAAGCAACAATGGCTGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGACTCCGGCGTCGGTAAGTCCAATTTGCTCTCTAGATTTACTAAGAACGAGTTCAACCTTGAGTCCAAATCCACCATTGGTGTCGAGTTCGCCACCAGGACCTTGAACGTCGATGGTAAAGTTATCAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTTTTCTTTCTTCTCTTTCCATTATATATCTATTCTTTTCTTGCCTTCTCTTTCGTTTTCCCTTCCCTTGATTTCCCTCTCACTTTTTGCTTCCCTTTTTCGATTCTGCTTTCTGCTTACCGTTTGCTCTGTTGGCTTTGAGTGTTCTGATTTATGGGTTTTGGTTAATTAGCATGTTCTGGTTTGCCGTGAGGGTTGTAATAACCTAGATCTGTTTGATGGAAACTGTGTTCTCTTCTCAATCTTGTGTTATTATGCTTCAATTGAGTATTTTAATGCTCATCAAGTTAGTTTTGATATCTTCTTATTGTGTTGTGTTGCGGCTTTGTTCTTCAACTTTCATGGCTGCAAGGGTAATTTCGCTGCAAGCTTAGATTCAGAAGGCATTGAAGAATTCATTTAATAGATGTTAATGAAGTAGTTGGGACTTGCGGACCCTTGTTGAGGAAGACTTTGGATTCTTCTGTTTCGTAGATCGTGTGCTCTCAGCCATTTCTTTTCTTTTTTTTCCTTTAAAAAAAAAAAAAAAAAAAACTCTTATAATTAATATTAGCAACAGAGATTGTTTTGATTCTTCCAATTATTCTTTCCCCTGTCTCCCGAGAAAGTATAAAGGTATTTGGCTTCCTTCTACAGGAATTCGTTTCCTGTTTTCCAAGGAGTTATATATTAGAATTTTCTTTCTTGCATTGTAGCTCCTCAACCCTTCTTTTCCAAAAAAAAAAAAAGTTCTGTTCCTTCAAATGTCTGCTGGAGGAAAAAATAAAACCAAGATTTCATAACATTTCAATGAAATTTCTATTTTTCTGGGTTAGCACTTAGCAGGGTTCTTGATCTCAATTAGTGCCATTGATTCCCTTTAAGAGAAGCTCAAAGTGGTGTTATAATTACTTAGAAGTAGTTTAGAGTATCCTACTAACAAGTGAAACTATGTCATCTGCTGGAATATTGTTGATGTGTGTGGAACTTTTGTCATAAGTTCTTGGTATCTATTGTTTTTGTCAAATTAGCCCAAGCTCTCATAAAAGCTGAAGCTTCTATATGTGGATTTCCTAGAAGAAATGATGATGTCACTCCTTAACAATTATGAATCTTCACTATCATTCCTCAGCACTCCCCTTCCACAAAATAAGCATCTGACAAAGGAAATAGAATGATCTTGATGTGTTTTCCAACTCTCTATTGACTATGGTTTTACTTTTTATTTTTGCAATACATGTTGACTAGTAAATTGCAATTTCTGTGGTGAGTTACAATTCTTTTTCTAAATCAGTTGAAAAGATCGCTTCATTATTCACCGATACAATTCTGCTAGACTGATTGTACGATCTAGTTTACAATCTCTCAGGTTTTCTTTAAATTGAATGAGCTGTTCAGATCTGCGTGGATTTTGTGTCTATAGGTACCGTGCCATCACTAGTGCCTACTATCGTGGAGCAGTCGGTGCGCTCCTTGTATATGATGTCACCCGTCATGCGACATTCGAGAACGTGGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCTGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCCGAGAGGGAATCACTGTACTTCATTGAGACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCCGAGGTTCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCCGTTGAAGGAGGAGAAAATGGATCTGCTTCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAACTTCGGTAATAATCTGTCTAGGTGATTTTGGATTTCATGTACTGTAATATTTTTTTCCCCCTTGAAGATGGTTAAGAAAGAGGAAGATATATCCCCCAAGACGCTGAATCTTGCTGTATTACAGAAAAAGAAGAGTACCTGAGCCACATGATTTGTTTGTGGTTGCTGTTGTGTCCATCATTATTAGCTTCTACC CAAAAGAGGGTTAGAAAAGTTTGTTTTGAAAAATCAGGTTAAATTTCATATTTTCAAAAAAATAGAAGGCCAAATGTAAAAAGTTTCTATAGTTTTAAGGCTATTTTCCCGAAACATCATTTCCTTTATTGATTTCACACTCTTCCCCCCACTTGATTTTGCATTTCATCGTTTTTCTTTTTCTCACATTCCTCGCAGTAACTCTCTCTCTTCCCCTTCTCTGTTCTTCTTCTTCTTCTTCTTCATCTTCGTCCATAAAGTTTGAGTTAAATCGAAGCAACAATGGCTGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGACTCCGGCGTCGGTAAGTCCAATTTGCTCTCTAGATTTACTAAGAACGAGTTCAACCTTGAGTCCAAATCCACCATTGGTGTCGAGTTCGCCACCAGGACCTTGAACGTCGATGGTAAAGTTATCAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACTAGTGCCTACTATCGTGGAGCAGTCGGTGCGCTCCTTGTATATGATGTCACCCGTCATGCGACATTCGAGAACGTGGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCTGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCCGAGAGGGAATCACTGTACTTCATTGAGACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCCGAGGTTCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCCGTTGAAGGAGGAGAAAATGGATCTGCTTCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAACTTCGGTAATAATCTGTCTAGGTGATTTTGGATTTCATGTACTGTAATATTTTTTTCCCCCTTGAAGATGGTTAAGAAAGAGGAAGATATATCCCCCAAGACGCTGAATCTTGCTGTATTACAGAAAAAGAAGAGTACCTGAGCCACATGATTTGTTTGTGGTTGCTGTTGTGTCCATCATTATTAGCTTCTACC ATGGCTGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGACTCCGGCGTCGGTAAGTCCAATTTGCTCTCTAGATTTACTAAGAACGAGTTCAACCTTGAGTCCAAATCCACCATTGGTGTCGAGTTCGCCACCAGGACCTTGAACGTCGATGGTAAAGTTATCAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACTAGTGCCTACTATCGTGGAGCAGTCGGTGCGCTCCTTGTATATGATGTCACCCGTCATGCGACATTCGAGAACGTGGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCTGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCCGAGAGGGAATCACTGTACTTCATTGAGACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCCGAGGTTCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCCGTTGAAGGAGGAGAAAATGGATCTGCTTCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAA MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSASSVPAQGEKINIKDESGLNRIKCCSS Homology
BLAST of Clc07G09730 vs. NCBI nr
Match: XP_022982677.1 (ras-related protein RABA1b-like [Cucurbita maxima] >XP_023516511.1 ras-related protein RABA1b-like [Cucurbita pepo subsp. pepo] >XP_038877813.1 ras-related protein RABA1b-like [Benincasa hispida] >KAG6600502.1 Ras-related protein Rab11D, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031142.1 Ras-related protein Rab11D [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 427.6 bits (1098), Expect = 6.6e-116 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. NCBI nr
Match: XP_004137233.1 (ras-related protein RABA1b [Cucumis sativus] >KGN53569.1 hypothetical protein Csa_015307 [Cucumis sativus]) HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115 Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. NCBI nr
Match: XP_022942927.1 (ras-related protein RABA1b-like [Cucurbita moschata]) HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115 Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. NCBI nr
Match: XP_022142868.1 (ras-related protein Rab11D-like [Momordica charantia]) HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115 Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0
BLAST of Clc07G09730 vs. NCBI nr
Match: XP_008451755.1 (PREDICTED: ras-related protein RABA1b-like [Cucumis melo]) HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115 Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 2.2e-98 Identity = 187/218 (85.78%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 2.2e-98 Identity = 178/218 (81.65%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 1.0e-95 Identity = 176/218 (80.73%), Postives = 192/218 (88.07%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy Swiss-Prot
Match: Q40195 (Ras-related protein Rab11E OS=Lotus japonicus OX=34305 GN=RAB11E PE=2 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95 Identity = 174/218 (79.82%), Postives = 197/218 (90.37%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 6.7e-95 Identity = 178/218 (81.65%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy TrEMBL
Match: A0A6J1IX83 (ras-related protein RABA1b-like OS=Cucurbita maxima OX=3661 GN=LOC111481478 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 3.2e-116 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy TrEMBL
Match: A0A0A0KXK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082460 PE=4 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 7.1e-116 Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy TrEMBL
Match: A0A6J1FRL8 (ras-related protein RABA1b-like OS=Cucurbita moschata OX=3662 GN=LOC111447812 PE=4 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 7.1e-116 Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy TrEMBL
Match: A0A6J1CPC3 (ras-related protein Rab11D-like OS=Momordica charantia OX=3673 GN=LOC111012877 PE=4 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115 Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0
BLAST of Clc07G09730 vs. ExPASy TrEMBL
Match: A0A1S3BSA1 (ras-related protein RABA1b-like OS=Cucumis melo OX=3656 GN=LOC103492947 PE=4 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115 Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0
BLAST of Clc07G09730 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B ) HSP 1 Score: 359.8 bits (922), Expect = 1.6e-99 Identity = 187/218 (85.78%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Clc07G09730 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D ) HSP 1 Score: 348.2 bits (892), Expect = 4.8e-96 Identity = 175/217 (80.65%), Postives = 200/217 (92.17%), Query Frame = 0
BLAST of Clc07G09730 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C ) HSP 1 Score: 348.2 bits (892), Expect = 4.8e-96 Identity = 178/218 (81.65%), Postives = 199/218 (91.28%), Query Frame = 0
BLAST of Clc07G09730 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 337.0 bits (863), Expect = 1.1e-92 Identity = 168/218 (77.06%), Postives = 194/218 (88.99%), Query Frame = 0
BLAST of Clc07G09730 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F ) HSP 1 Score: 318.2 bits (814), Expect = 5.3e-87 Identity = 157/220 (71.36%), Postives = 193/220 (87.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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