Clc07G07290 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G07290
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr07: 19432802 .. 19433422 (-)
RNA-Seq ExpressionClc07G07290
SyntenyClc07G07290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACTTTACCAACGCATGGTAAGCCAAGTACTTTTCTTCCCCCGCCAATGATCAACTTCTCCTCCAACGCGGGTGACTGCTTCAGCTCACGACACCCTTCGTGATTCCTCCTTCAACGAATGGCCACTTCAAAGAAAAATTCTAACTCTTCTCTTCATCAACGCATAGTCTTAGCCAACACTTAGCCAAAATTGTACTCTTTCAACCTTGGCTACTTTTCCTCTAACAACGCATAGCCACAATTTCTCTTGCCTCCTCCCAGCACTTAGTATTATAAGCCAGTGCTTACATATGAAGCGATGTTCCAAAGCCAAATGGGGCAAATTAAAAGCCAAGCCACTGCAATTCGTAATTTAGAAGTTCAAATGTGACAAATTGCAGGTGAGCTCAAAATCAGACCCCAAGGAGCATTGCCCAGTACTACCGAAGCCCCACGACAAAACGGTAAAGAACAATGTCAAGCTGTGACATTGAGGAGTGGGAAAATTCTTCCCACTGAAACGCAAGACCAGAGGACGCAAGGAAACCTACAACCTCACATCACTTCACAACCAACTCCAACAATACCAACTAATGATCCGCAGCCATCATCAATCACCACAGCTTCTCAAGAATAG

mRNA sequence

ATGAAAACTTTACCAACGCATGGTGAGCTCAAAATCAGACCCCAAGGAGCATTGCCCAGTACTACCGAAGCCCCACGACAAAACGGTAAAGAACAATGTCAAGCTGTGACATTGAGGAGTGGGAAAATTCTTCCCACTGAAACGCAAGACCAGAGGACGCAAGGAAACCTACAACCTCACATCACTTCACAACCAACTCCAACAATACCAACTAATGATCCGCAGCCATCATCAATCACCACAGCTTCTCAAGAATAG

Coding sequence (CDS)

ATGAAAACTTTACCAACGCATGGTGAGCTCAAAATCAGACCCCAAGGAGCATTGCCCAGTACTACCGAAGCCCCACGACAAAACGGTAAAGAACAATGTCAAGCTGTGACATTGAGGAGTGGGAAAATTCTTCCCACTGAAACGCAAGACCAGAGGACGCAAGGAAACCTACAACCTCACATCACTTCACAACCAACTCCAACAATACCAACTAATGATCCGCAGCCATCATCAATCACCACAGCTTCTCAAGAATAG

Protein sequence

MKTLPTHGELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKILPTETQDQRTQGNLQPHITSQPTPTIPTNDPQPSSITTASQE
Homology
BLAST of Clc07G07290 vs. NCBI nr
Match: WP_217833224.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 8  GELKIRPQGALPSTTEAPR---QNGKEQCQAVTLRSGKILPTETQD 51
          GE K R +G+LPS TEAPR    +GKEQCQAVTLRSGK+L TETQD
Sbjct: 38 GEFKTRQKGSLPSNTEAPRGMGSSGKEQCQAVTLRSGKVLHTETQD 83

BLAST of Clc07G07290 vs. NCBI nr
Match: KAA3480470.1 (hypothetical protein EPI10_020896 [Gossypium australe])

HSP 1 Score: 57.0 bits (136), Expect = 9.2e-05
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 6   THGELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGK----ILPTETQDQRT 54
           T  ELK RPQGALPS TE PR+ GK QC+ +TLRSGK    + PT  Q Q++
Sbjct: 52  TTNELKNRPQGALPSDTENPRRTGKAQCKTITLRSGKNLVHVTPTGVQPQQS 103

BLAST of Clc07G07290 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKIL 45
           +LK RPQG LPS TE PR++GKE C+A+TLRSGKIL
Sbjct: 356 DLKNRPQGTLPSDTENPRRDGKEHCKAITLRSGKIL 391

BLAST of Clc07G07290 vs. NCBI nr
Match: XP_030495102.1 (uncharacterized protein LOC115710889 [Cannabis sativa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKIL 45
           +LK RPQG LPS TE PR++GKE C+A+TLRSGKIL
Sbjct: 79  DLKNRPQGTLPSDTENPRRDGKEHCKAITLRSGKIL 114

BLAST of Clc07G07290 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKIL 45
           +LK RPQG LPS TE PR++GKE C+AVTLRSGKI+
Sbjct: 425 DLKNRPQGTLPSDTENPRRDGKEHCKAVTLRSGKII 460

BLAST of Clc07G07290 vs. ExPASy TrEMBL
Match: A0A5B6WFU8 (Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_020896 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 6   THGELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGK----ILPTETQDQRT 54
           T  ELK RPQGALPS TE PR+ GK QC+ +TLRSGK    + PT  Q Q++
Sbjct: 52  TTNELKNRPQGALPSDTENPRRTGKAQCKTITLRSGKNLVHVTPTGVQPQQS 103

BLAST of Clc07G07290 vs. ExPASy TrEMBL
Match: A0A6J1GJ68 (uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC111454344 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-04
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKILPTETQDQRTQGN 57
           EL+ RP G LP+ TE P++ GKEQCQA+ LRSGK +P+  +    QG+
Sbjct: 77  ELRNRPLGKLPADTETPKREGKEQCQAIELRSGKKIPSGGEKNAEQGD 124

BLAST of Clc07G07290 vs. ExPASy TrEMBL
Match: A0A6J1DXK5 (uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025500 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKILPT 47
           +LK +P+G LPS  + P+++GKEQC A+TLRSGK LPT
Sbjct: 246 DLKSKPKGVLPSDIKVPKRDGKEQCNALTLRSGKTLPT 283

BLAST of Clc07G07290 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.4e-04
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 9   ELKIRPQGALPSTTEAPRQNGKEQCQAVTLRSGKILP---------TETQDQRTQGNLQP 68
           +LK RP GALPS TE P+++ KEQC A+TLRSGK LP         T+   Q  QG  Q 
Sbjct: 286 DLKSRPVGALPSDTEVPKRDSKEQCNALTLRSGKALPPTHPNAPTLTKEPAQIVQGEPQS 345

Query: 69  HITSQPTPTIPTNDPQ 76
              S+P   +    P+
Sbjct: 346 EQDSEPAEVVVPIPPE 361

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833224.17.5e-0771.74hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KAA3480470.19.2e-0557.69hypothetical protein EPI10_020896 [Gossypium australe][more]
XP_030507648.11.2e-0472.22uncharacterized protein LOC115722545 [Cannabis sativa][more]
XP_030495102.11.2e-0472.22uncharacterized protein LOC115710889 [Cannabis sativa][more]
XP_030509259.11.6e-0472.22uncharacterized protein LOC115723937 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5B6WFU84.5e-0557.69Uncharacterized protein OS=Gossypium australe OX=47621 GN=EPI10_020896 PE=4 SV=1[more]
A0A6J1GJ684.9e-0452.08uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A6J1DXK56.4e-0460.53uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DWK18.4e-0443.42uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G07290.1Clc07G07290.1mRNA