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Clc07G06580 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGGTACATGTATTTCTAGATTAAATTATTTTATCCTTTTAATACATGGAACTATATTTACAAACACATGATCCACAAGAAACTATTGAGGAAAAATGAGTAGTTTCACATGTGGAGGAATAGCGAGTACAAAGAAAGTCTTGTCAAAGAAAGTCTTGACAGAATGTAGGGTTGTTTTCAAATATAGCAAAATGACAAATCTAAAAAAATATCACTACTATAAGAGATAGACAACAATAGACCTTGATAGACTACTATCATCTATCAATATCTATTAATGATGGACACTAATAGATGTCTATCAGTGTCTATCGCTGTCTGCACTAATAGATAGTGACATTTTGCTATATTTGAAAATATTTTCAGAAGTTTTGACATTTAAAACAATTACCCTAGAAAGTATATATTTTAGTAATATTTGAGTATATTTATCAATTGTTTTTATTTTATCTCTTAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGGTATGTTGATGAAGAGAAATTAGACTGTCGTTTTCAATTAAAAATGTTCATGCAATGTTGCTAGTTATAACCTACATTTTGTTCTTCTCTGCATTCAAAAATTTATCTTGCTCTATGTATAAAAATTCACTGATAAGCTTTCTAGATTTTGTTCTTATCCTCTCTATTACAAATTGATGGAATAAAACAACAAAGAAAAGTATTATATATCTATGACATTTATATTTTGACAACCGTTACAAAACATTTTATTGATGTTACAAAAATTGGCAAATAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACCAACTGTCTGAACTAGGAAACGACCAATAATCCATACAAAAATTCTGGTAGAGAGCTCGACCAAAGCAACACCATGAGAAGAATCTAGACTACCCTTCAAAAGGCTATAAAAGAACAGAAGCCTTTGGTAGGATACCTCCTAACAAGAGAATTCAAGAACACAAAGAACAAACAAGAAAACTAAAAGATAGAATTATATTGTAAATCAATGAAGAAATTACAATATGCCTCATCACATTCTAGAGGGCTGAGCATCCTCTCCCAAATTCCCAATTAGGAAATCCCACAAAAGTTCTTCACACCTTTCTCCAACCCCTCTCCTTCTATTTATAGCAAAAAGACCTAACCAACTTGCTAACTATTTACTAATATGCCCCAACTAATAACCATACTAATATTCTACTAATACTCCTATTGTTTCTGTAATTAGGGGCCTTACAGCCTTAAACTGAGTTACAGGCTTGATAGAAACCTTATAGATGATACAAATGATAAGCAATGACCAACAAGTCAAACCAATTGAGAAGAGGAATTCCCAGTTGGAAGGAATTACAAAAGATTCTTTCAATGGATCATAAGTTCAGCTAAATCATGAGTTTCTAAAGAAGCCAAAATTCTTACCCCAAGTTAAGGCTAAAAATGAATGAAGATTCGAAAAACCTATGAAGCATGAATACTTCATTTTAGGTAGAGAATTTGTATTGCATATGGATTCATCCAGTTATGCTTCAAATACGTATTTGATTTGTGAATTTGTGTATCCTATTTTTTCTTTTATTAACTTTAGATACCTGTGTCCTGTCCCATATACGTGAAGGGGACACATATATTTTTTCCATTTAAAGCTGACCCAACCCATCTTTGAAGCCCACGGCTCCCAATCCAAATGTAACATAATGAAAGAAAAAAACATATAAATTTAAAAGTAAAAACCCTAAACGACAAGCAAACCAACAAACCATCTTCTTAATCCTTCCTCCATGATTCACGAACAACCAGGTAGCCCACGACCTCGTCCTCTCTATGTGCCACTACTCCCACTGTTGTCATCCTTTGTTCCCCTTCAGCTTCGTTGTCACCGCCGTTGGTCACAATGTGTCACCCTTTTCCCCTCTTTTTAAATCTTCTTTAATTTAACTTAACTTAAATTAGTAATATCTTGTTACATTTACATAATCTTTAAAAAGTATATACAAAAAAACGTATCCTCAACGTATTAGAATCTTAGCTTTTTAGACATTGATGTATCACTATATCCTATTGTATTCGTATCCGTGTTTGTGCTTTATAGCAAAAAACTATCAAAAGTCTTCTCTATGTCCTTGAAGATATGATTGGTCCTCTCCTTCCCAATGAACTGAAAGAAATCTCTTATAAAATTAAGCCAGGGCAGTTCCTTATCCTCTTTCAAATGATGTCCTGTCAACACTAAAGCCACAAGAGTGAAGGGATTGCTCGGGGAGGGTAAGATGCCAACTAAAAGCCTCCAGAATTTCCAATATGTAGATGCAAATTAACAGAAGAGATACAAATGCCTCTGGGTTTCCATTGCCTTCTTACACATGGAACACTATCCAGGGTAAGCAAGCTAAATGGACCTCTTTTGGAGTTTGTCATGGGTGCCGATGCAAGCATGGCTGAGCTCCCTCGTGAAAAAACTTAATATTTTGGAATGTTTCCTTTCCATATAGCCTTGAAGACATTGGCATTAGCTTTTGTTCCTGCAGATGCAAGATCAGTGGATAAGGATTTTGTTGAAAAGTAGGCCTTAACCCAAAACATTAGTTCTTCCGTTTCCCACTTTGCAATTGCAACGACTATAGACAAGGTCTCCATGCTTCAAACTGTGCTTCCTAGGTCCTTTATATGAGTAGTAGCCACATCCAGTTTGAGACCAAGGTGACCTGTGGCAAGTTTTGCCACAATAATCCTTCTCCACGAAGCATCCCTTTAAACCACCATATCCATTTAGCAAAGAAAGCACTGTTTCTATGCTTCAAGCTCGTGACGAAAGGAAGTAAAGTGCAGAATCGTATCTGTCTCTGATGTTTGACAAAAATCAAGCTTAAGTATGTATATATATCTGTGTGTGTGTAATGAATATATATATATGCAATGAATAAACCAGCTTTCATGAAAGGGAGTGAAAGTATATAGAGGGGCCGGCCAACAAAAATAAACAACATATTGGTTTGAATGACTTAACAAACATTCCAAGACCTTTTTGATAAAACTTAAGAAATGTGGAAGATTTGGCTTACATTAAGTAGATTGGTTTGTTATGACTTAACAAACTTTCGTCAGTAGCGTTCTGTCTTGGTTATTTAATTAATAGGTTGCTCTTGGAGTTTTATATATTCTCCTGTTGATTTATTGGTTGTGTTTTTCAATGTAAATATCGATGATAACAGTAATAATTGTTTGGAATGTCCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATGTAAGTAACATCTTGTTCGTCTATTTACAAGTAATAATGATTGCTTAATCATATGATTTGTTCAATGCTTGCAGTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGCAAGTATTATACTTTGATGAGCTCTATTCTAGTGCAATTGATTTACTAATATACGATACACCAAAAATATGGGAATTGGAATTGCAGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTATGTTATATTATATGCTTTTTGTTACAACTTCTTCTTGAAGTATATTCAAAGTAAAATTTGAAGCATGATAGCTTCTTGTTCGTTTGTAGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGGTAAATTCTACAATTTTATATATTTAATTCAAAGATATTTGTTGTTTAAAATTAATTTAAAAATTTTAGTTTTCAATTATTTGTTGGGTCGGAATGCTAATGGCTATTTATTGTTTTTTTTCTTTTTTTTTTGGGGGGCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA MPPQKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN Homology
BLAST of Clc07G06580 vs. NCBI nr
Match: KAA0032138.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]) HSP 1 Score: 472.2 bits (1214), Expect = 2.8e-129 Identity = 238/264 (90.15%), Postives = 244/264 (92.42%), Query Frame = 0
BLAST of Clc07G06580 vs. NCBI nr
Match: XP_008456875.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo]) HSP 1 Score: 414.8 bits (1065), Expect = 5.4e-112 Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = 0
BLAST of Clc07G06580 vs. NCBI nr
Match: XP_038891816.1 (ribosomal RNA small subunit methyltransferase nep-1-like [Benincasa hispida]) HSP 1 Score: 359.4 bits (921), Expect = 2.7e-95 Identity = 182/195 (93.33%), Postives = 185/195 (94.87%), Query Frame = 0
BLAST of Clc07G06580 vs. NCBI nr
Match: TYK14383.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]) HSP 1 Score: 298.1 bits (762), Expect = 7.4e-77 Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0
BLAST of Clc07G06580 vs. NCBI nr
Match: CAB4267774.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 261.5 bits (667), Expect = 7.6e-66 Identity = 137/250 (54.80%), Postives = 176/250 (70.40%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 7.0e-30 Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4) HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28 Identity = 70/204 (34.31%), Postives = 117/204 (57.35%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 4.3e-27 Identity = 73/219 (33.33%), Postives = 116/219 (52.97%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q9P8P7 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans OX=5476 GN=NEP1 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 5.2e-25 Identity = 72/212 (33.96%), Postives = 113/212 (53.30%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 5.2e-25 Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A5A7SNC0 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00430 PE=3 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 1.4e-129 Identity = 238/264 (90.15%), Postives = 244/264 (92.42%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A1S3C5G9 (ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 GN=LOC103496687 PE=3 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 2.6e-112 Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A5D3CR92 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00200 PE=3 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 3.6e-77 Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A6J5TWQ3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10640 PE=3 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 3.7e-66 Identity = 137/250 (54.80%), Postives = 176/250 (70.40%), Query Frame = 0
BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: M5Y7H9 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019713mg PE=3 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65 Identity = 128/211 (60.66%), Postives = 159/211 (75.36%), Query Frame = 0
BLAST of Clc07G06580 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related ) HSP 1 Score: 176.0 bits (445), Expect = 3.9e-44 Identity = 103/264 (39.02%), Postives = 157/264 (59.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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