Clc07G06580 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G06580
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal RNA small subunit methyltransferase NEP1-like
Location	ClcChr07: 13244520 .. 13248927 (+)
RNA-Seq Expression	Clc07G06580
Synteny	Clc07G06580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGGTACATGTATTTCTAGATTAAATTATTTTATCCTTTTAATACATGGAACTATATTTACAAACACATGATCCACAAGAAACTATTGAGGAAAAATGAGTAGTTTCACATGTGGAGGAATAGCGAGTACAAAGAAAGTCTTGTCAAAGAAAGTCTTGACAGAATGTAGGGTTGTTTTCAAATATAGCAAAATGACAAATCTAAAAAAATATCACTACTATAAGAGATAGACAACAATAGACCTTGATAGACTACTATCATCTATCAATATCTATTAATGATGGACACTAATAGATGTCTATCAGTGTCTATCGCTGTCTGCACTAATAGATAGTGACATTTTGCTATATTTGAAAATATTTTCAGAAGTTTTGACATTTAAAACAATTACCCTAGAAAGTATATATTTTAGTAATATTTGAGTATATTTATCAATTGTTTTTATTTTATCTCTTAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGGTATGTTGATGAAGAGAAATTAGACTGTCGTTTTCAATTAAAAATGTTCATGCAATGTTGCTAGTTATAACCTACATTTTGTTCTTCTCTGCATTCAAAAATTTATCTTGCTCTATGTATAAAAATTCACTGATAAGCTTTCTAGATTTTGTTCTTATCCTCTCTATTACAAATTGATGGAATAAAACAACAAAGAAAAGTATTATATATCTATGACATTTATATTTTGACAACCGTTACAAAACATTTTATTGATGTTACAAAAATTGGCAAATAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACCAACTGTCTGAACTAGGAAACGACCAATAATCCATACAAAAATTCTGGTAGAGAGCTCGACCAAAGCAACACCATGAGAAGAATCTAGACTACCCTTCAAAAGGCTATAAAAGAACAGAAGCCTTTGGTAGGATACCTCCTAACAAGAGAATTCAAGAACACAAAGAACAAACAAGAAAACTAAAAGATAGAATTATATTGTAAATCAATGAAGAAATTACAATATGCCTCATCACATTCTAGAGGGCTGAGCATCCTCTCCCAAATTCCCAATTAGGAAATCCCACAAAAGTTCTTCACACCTTTCTCCAACCCCTCTCCTTCTATTTATAGCAAAAAGACCTAACCAACTTGCTAACTATTTACTAATATGCCCCAACTAATAACCATACTAATATTCTACTAATACTCCTATTGTTTCTGTAATTAGGGGCCTTACAGCCTTAAACTGAGTTACAGGCTTGATAGAAACCTTATAGATGATACAAATGATAAGCAATGACCAACAAGTCAAACCAATTGAGAAGAGGAATTCCCAGTTGGAAGGAATTACAAAAGATTCTTTCAATGGATCATAAGTTCAGCTAAATCATGAGTTTCTAAAGAAGCCAAAATTCTTACCCCAAGTTAAGGCTAAAAATGAATGAAGATTCGAAAAACCTATGAAGCATGAATACTTCATTTTAGGTAGAGAATTTGTATTGCATATGGATTCATCCAGTTATGCTTCAAATACGTATTTGATTTGTGAATTTGTGTATCCTATTTTTTCTTTTATTAACTTTAGATACCTGTGTCCTGTCCCATATACGTGAAGGGGACACATATATTTTTTCCATTTAAAGCTGACCCAACCCATCTTTGAAGCCCACGGCTCCCAATCCAAATGTAACATAATGAAAGAAAAAAACATATAAATTTAAAAGTAAAAACCCTAAACGACAAGCAAACCAACAAACCATCTTCTTAATCCTTCCTCCATGATTCACGAACAACCAGGTAGCCCACGACCTCGTCCTCTCTATGTGCCACTACTCCCACTGTTGTCATCCTTTGTTCCCCTTCAGCTTCGTTGTCACCGCCGTTGGTCACAATGTGTCACCCTTTTCCCCTCTTTTTAAATCTTCTTTAATTTAACTTAACTTAAATTAGTAATATCTTGTTACATTTACATAATCTTTAAAAAGTATATACAAAAAAACGTATCCTCAACGTATTAGAATCTTAGCTTTTTAGACATTGATGTATCACTATATCCTATTGTATTCGTATCCGTGTTTGTGCTTTATAGCAAAAAACTATCAAAAGTCTTCTCTATGTCCTTGAAGATATGATTGGTCCTCTCCTTCCCAATGAACTGAAAGAAATCTCTTATAAAATTAAGCCAGGGCAGTTCCTTATCCTCTTTCAAATGATGTCCTGTCAACACTAAAGCCACAAGAGTGAAGGGATTGCTCGGGGAGGGTAAGATGCCAACTAAAAGCCTCCAGAATTTCCAATATGTAGATGCAAATTAACAGAAGAGATACAAATGCCTCTGGGTTTCCATTGCCTTCTTACACATGGAACACTATCCAGGGTAAGCAAGCTAAATGGACCTCTTTTGGAGTTTGTCATGGGTGCCGATGCAAGCATGGCTGAGCTCCCTCGTGAAAAAACTTAATATTTTGGAATGTTTCCTTTCCATATAGCCTTGAAGACATTGGCATTAGCTTTTGTTCCTGCAGATGCAAGATCAGTGGATAAGGATTTTGTTGAAAAGTAGGCCTTAACCCAAAACATTAGTTCTTCCGTTTCCCACTTTGCAATTGCAACGACTATAGACAAGGTCTCCATGCTTCAAACTGTGCTTCCTAGGTCCTTTATATGAGTAGTAGCCACATCCAGTTTGAGACCAAGGTGACCTGTGGCAAGTTTTGCCACAATAATCCTTCTCCACGAAGCATCCCTTTAAACCACCATATCCATTTAGCAAAGAAAGCACTGTTTCTATGCTTCAAGCTCGTGACGAAAGGAAGTAAAGTGCAGAATCGTATCTGTCTCTGATGTTTGACAAAAATCAAGCTTAAGTATGTATATATATCTGTGTGTGTGTAATGAATATATATATATGCAATGAATAAACCAGCTTTCATGAAAGGGAGTGAAAGTATATAGAGGGGCCGGCCAACAAAAATAAACAACATATTGGTTTGAATGACTTAACAAACATTCCAAGACCTTTTTGATAAAACTTAAGAAATGTGGAAGATTTGGCTTACATTAAGTAGATTGGTTTGTTATGACTTAACAAACTTTCGTCAGTAGCGTTCTGTCTTGGTTATTTAATTAATAGGTTGCTCTTGGAGTTTTATATATTCTCCTGTTGATTTATTGGTTGTGTTTTTCAATGTAAATATCGATGATAACAGTAATAATTGTTTGGAATGTCCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATGTAAGTAACATCTTGTTCGTCTATTTACAAGTAATAATGATTGCTTAATCATATGATTTGTTCAATGCTTGCAGTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGCAAGTATTATACTTTGATGAGCTCTATTCTAGTGCAATTGATTTACTAATATACGATACACCAAAAATATGGGAATTGGAATTGCAGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTATGTTATATTATATGCTTTTTGTTACAACTTCTTCTTGAAGTATATTCAAAGTAAAATTTGAAGCATGATAGCTTCTTGTTCGTTTGTAGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGGTAAATTCTACAATTTTATATATTTAATTCAAAGATATTTGTTGTTTAAAATTAATTTAAAAATTTTAGTTTTCAATTATTTGTTGGGTCGGAATGCTAATGGCTATTTATTGTTTTTTTTCTTTTTTTTTTGGGGGGCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA

mRNA sequence

ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA

Coding sequence (CDS)

ATGCCTCCTCAGAAAAGGAGGAAGTCTCAAAGTTCCTCTTCAAAGTTGGCAAGGCTGAAACAGGAGAGGGTAGAAAATTTAGGTGAATTGAAAAATGTAGAAGATGTTAATACGAACGGCAGTTTGCTGGATGTGATGAATGAGAAGCCTCAAGAACCTCGGGTAATATTTGTTCTGGATAATGCTCCTTTGCACAAGGGTCTTGTTGGGAAGAAGTGGAAGATTCTTGATTCATGGAGAGATCAAGATTTCCTTCTCAAGCATAAGAAGAATCTTAAAGACTTTAGGCTTGAAAATGTTCGTCAGCCTCTCCTTGACATTTTTGACAGCCGAGTTAATAAAGCTGGAAAAGTAGGGGCTGTTTATGTCAAAATTGACGATGGAGTACTATTTGAAATCAAGCCACATGCTCGTATTCCAAGAACATACAATCGCTTTTGTGGACTGATATTGGATTTGCTAAAGAAGAGATGTATTCGTGCTGAAGATACAAACGAAGTACTTTTTCGTGTCCTCAACGAACCAGTGTCTCAACATTTGCCCAGCAACTCTCGTATTATTGGTGTCTCTAATGGTTTGGAAAAGTTAGTTGACATACAGAATTATGTGTCTGCTACTAACGATGATATGAATCTCATTTTTGTGGTCAGTGCGACAGATCATAAGAAAATTAATATATGTACGGATGACGTGATATCAGTTTCACATTATCCACTGGTGTCCATGAGTTGTGTAGGTATGATTTGTGAAGCATTGGAGCATAAATGGATCGTTGAACCTCCTTCACATAACTGA

Protein sequence

MPPQKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN

Homology

[Close]

BLAST of Clc07G06580 vs. NCBI nr
Match: KAA0032138.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 472.2 bits (1214), Expect = 2.8e-129
Identity = 238/264 (90.15%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MPPQKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLD 60
           MPPQKRR S+S SSKLAR KQE VENL ELKNVEDV T  SLLD+MNEKPQE RVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGA 120
           NAPLHKGLVGKKWKILDSWRD  FLLKHKKNLKDF  ENVRQPLLDIFDSRVNKAGKVGA
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQPLLDIFDSRVNKAGKVGA 120

Query: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHL 180
           VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFR+LNEP+SQHL
Sbjct: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRILNEPLSQHL 180

Query: 181 PSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINICTDDVISVSHYPLV 240
           PSNSRIIGVSNGLEKLVDIQNYVS T DD N +FVVSATDHKKINIC DD+ISVSHYPLV
Sbjct: 181 PSNSRIIGVSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHKKINICADDMISVSHYPLV 240

Query: 241 SMSCVGMICEALEHKWIVEPPSHN 265
           SMSCVGMICEALEHKWIVEP  HN
Sbjct: 241 SMSCVGMICEALEHKWIVEPLLHN 263

[Close]

BLAST of Clc07G06580 vs. NCBI nr
Match: XP_008456875.1 (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 5.4e-112
Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 45  VMNEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPL 104
           +MNEKPQE RVIFVLDNAPLHKGLVGKKWKILDSWRD  FLLKHKKNLKDF  ENVRQPL
Sbjct: 1   MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQPL 60

Query: 105 LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT 164
           LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT
Sbjct: 61  LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT 120

Query: 165 NEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKI 224
           NEVLFR+LNEP+SQHLPSNSRIIGVSNGLEKLVDIQNYVS T DD N +FVVSATDHKKI
Sbjct: 121 NEVLFRILNEPLSQHLPSNSRIIGVSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHKKI 180

Query: 225 NICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN 265
           NIC DD+ISVSHYPLVSMSCVGMICEALEHKWIVEP  HN
Sbjct: 181 NICADDMISVSHYPLVSMSCVGMICEALEHKWIVEPLLHN 219

[Close]

BLAST of Clc07G06580 vs. NCBI nr
Match: XP_038891816.1 (ribosomal RNA small subunit methyltransferase nep-1-like [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 2.7e-95
Identity = 182/195 (93.33%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MPPQKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLD 60
           M  QKRR S+SSSSKLARLKQERVENL ELKNVEDVNTN SLLDV+NEKPQE RVIFVLD
Sbjct: 1   MSHQKRRNSESSSSKLARLKQERVENLDELKNVEDVNTNSSLLDVINEKPQEHRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGA 120
           NAPLHKGLVGKKWKILDSWRDQ FLLKHKKNLKDF  ENVRQPLLDIFDSRVNKAGKVGA
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDQQFLLKHKKNLKDFCPENVRQPLLDIFDSRVNKAGKVGA 120

Query: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHL 180
           VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEP+SQHL
Sbjct: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPLSQHL 180

Query: 181 PSNSRIIGVSNGLEK 196
           P NSRIIGVSNGLEK
Sbjct: 181 PRNSRIIGVSNGLEK 195

[Close]

BLAST of Clc07G06580 vs. NCBI nr
Match: TYK14383.1 (ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 7.4e-77
Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 103 PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE 162
           PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE
Sbjct: 58  PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE 117

Query: 163 DTNEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHK 222
           DTNEVLFR+LNEP+SQHLPSNSR   VSNGLEKLVDIQNYVS T DD N +FVVSATDHK
Sbjct: 118 DTNEVLFRILNEPLSQHLPSNSR---VSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHK 177

Query: 223 KINICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN 265
           KINIC DD+ISVSHYPLVSMSCVGMICEALEHKWIVEP  HN
Sbjct: 178 KINICADDMISVSHYPLVSMSCVGMICEALEHKWIVEPLLHN 215

[Close]

BLAST of Clc07G06580 vs. NCBI nr
Match: CAB4267774.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 261.5 bits (667), Expect = 7.6e-66
Identity = 137/250 (54.80%), Postives = 176/250 (70.40%), Query Frame = 0


Query: 8   KSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLDNAPLHKG 67
           +SQ+ SS+   +K +  E   +   +E    + +L    N    + R IFV++NA L KG
Sbjct: 14  QSQNCSSRCRTVKPKLEEE--KSTTMEKTEDDATLTLTHNNANDKVRAIFVVENASLTKG 73

Query: 68  LVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGAVYVKIDD 127
            V K+WKILDS  D DFLLK KK+L DFR   V + L  I DS++NKAG VGAVYVK D 
Sbjct: 74  FVRKRWKILDSEEDADFLLKQKKDLNDFRPGRVYEALRAILDSKLNKAGMVGAVYVKTDQ 133

Query: 128 GVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHLPSNSRII 187
           GVLFEIKPH RIPRT  RFCG+IL+LL  +CIR +DTNE+L RV+ EPV++HLP NSR++
Sbjct: 134 GVLFEIKPHVRIPRTCKRFCGVILELLGHKCIRDKDTNEILMRVIEEPVTRHLPVNSRVV 193

Query: 188 GVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKIN-ICTDDVISVSHYPLVSMSCVG 247
           G+S   EKLVDI  YV++ +D++NL+FVV A  H KI+   TDD ISVS+YPL +  CVG
Sbjct: 194 GLSYSSEKLVDIDEYVNSGSDELNLVFVVGAMVHGKISKEYTDDFISVSNYPLSAQYCVG 253

Query: 248 MICEALEHKW 257
           +ICE+LEHKW
Sbjct: 254 LICESLEHKW 261

[Close]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: O35130 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-30
Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 0


Query: 54  RVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVN 113
           R+I VL+ A L    VGK +++L+  R +  LLK+ ++  + R +   Q LL + DS +N
Sbjct: 42  RLIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLN 101

Query: 114 KAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLN 173
           +AG +  VY+     VL E+ P  RIPRT++RFCGL++ LL K  +RA D  + L +V+ 
Sbjct: 102 RAGLL-QVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 161

Query: 174 EPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINI-CTDDVI 233
            PVS H P     IG S  +E + DI+  V +++    ++FVV A  H K+++  T+ ++
Sbjct: 162 NPVSDHFPVGCMKIGTSFSVEDISDIRELVPSSDP---VVFVVGAFAHGKVSVEYTEKMV 221

Query: 234 SVSHYPLVSMSCVGMICEALEHKW 257
           S+S+YPL +      +  A E  W
Sbjct: 222 SISNYPLSAALTCAKVTTAFEEVW 241

[Close]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q92979 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 70/204 (34.31%), Postives = 117/204 (57.35%), Query Frame = 0


Query: 54  RVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVN 113
           R+I VL+ A L    VGK +++L+  + +  LLK+ ++  + R +   Q LL + DS +N
Sbjct: 42  RLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLN 101

Query: 114 KAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLN 173
           +AG +  VY+     VL E+ P  RIPRT++RFCGL++ LL K  +RA D  + L +V+ 
Sbjct: 102 RAGLL-QVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 161

Query: 174 EPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINI-CTDDVI 233
            PVS H P     +G S  +  + D++  V +++    ++FVV A  H K+++  T+ ++
Sbjct: 162 NPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDP---IVFVVGAFAHGKVSVEYTEKMV 221

Query: 234 SVSHYPLVSMSCVGMICEALEHKW 257
           S+S+YPL +      +  A E  W
Sbjct: 222 SISNYPLSAALTCAKLTTAFEEVW 241

[Close]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q9XX15 (Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX=6239 GN=Y39A1A.14 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-27
Identity = 73/219 (33.33%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 39  NGSLLDVMNEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLE 98
           N   +   N+   +  +  VL+   L    VG ++ IL S +  +FL K KK+  D+R +
Sbjct: 12  NAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPD 71

Query: 99  NVRQPLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRC 158
            + Q LL++ DS +N+AGK+  V+ +    VL ++ P  RIPRT++RFCGL++ LL K  
Sbjct: 72  ILHQCLLNLLDSPLNRAGKL-RVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLS 131

Query: 159 IRAEDTNEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSA 218
           IRA +T + L  V+  PVS HLP  SR + +S  + +L  + N + A   D  L+ ++  
Sbjct: 132 IRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELT-MANKLVAPETDEPLVLIIGG 191

Query: 219 TDHKKINI-CTDDVISVSHYPLVSMSCVGMICEALEHKW 257
               KI +   D    +S+YPL +      +   LE  W
Sbjct: 192 IARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIW 228

[Close]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q9P8P7 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans OX=5476 GN=NEP1 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-25
Identity = 72/212 (33.96%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 54  RVIFVLDNAPLHK------GLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDI 113
           R+I VL  A L        G  G ++ +L+    Q  L K  +++ + R +   Q LL +
Sbjct: 55  RLIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMGRDIAEARPDITHQCLLTL 114

Query: 114 FDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEV 173
            DS +NKAG++  VY++   GVL E+ P  RIPRT+ RF GL++ LL K  IR+E++ EV
Sbjct: 115 LDSPINKAGRL-QVYIQTARGVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEV 174

Query: 174 LFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINIC 233
           L +V+  P++ HLP+  R + +S   E L  +Q+YV+  +++ ++   V A    K N  
Sbjct: 175 LLKVIKNPITDHLPTKCRKVTLSFDAE-LKRVQDYVTTLDENESICVFVGAMARGKDNFA 234

Query: 234 ---TDDVISVSHYPLVSMSCVGMICEALEHKW 257
               D+ I +S YPL +       C   E  W
Sbjct: 235 DEFVDEKIGLSDYPLSASVACSKFCHGCEDVW 264

[Close]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot
Match: Q06287 (Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EMG1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-25
Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 54  RVIFVLDNAPL--HK----GLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDI 113
           R+I VL  A L  HK    G  G K+ +L+    Q  L K  +++ + R +   Q LL +
Sbjct: 40  RMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTL 99

Query: 114 FDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEV 173
            DS +NKAGK+  VY++   G+L E+ P  RIPRT+ RF GL++ LL K  IR+ ++ E 
Sbjct: 100 LDSPINKAGKL-QVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEK 159

Query: 174 LFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINIC 233
           L +V+  P++ HLP+  R + +S     ++ +Q+Y+   +DD ++   V A    K N  
Sbjct: 160 LLKVIKNPITDHLPTKCRKVTLSFD-APVIRVQDYIEKLDDDESICVFVGAMARGKDNFA 219

Query: 234 ---TDDVISVSHYPLVSMSCVGMICEALEHKW 257
               D+ + +S+YPL +       C   E  W
Sbjct: 220 DEYVDEKVGLSNYPLSASVACSKFCHGAEDAW 249

[Close]

BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A5A7SNC0 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00430 PE=3 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.4e-129
Identity = 238/264 (90.15%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MPPQKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLD 60
           MPPQKRR S+S SSKLAR KQE VENL ELKNVEDV T  SLLD+MNEKPQE RVIFVLD
Sbjct: 1   MPPQKRRNSKSFSSKLARRKQESVENLDELKNVEDVGTTSSLLDMMNEKPQESRVIFVLD 60

Query: 61  NAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGA 120
           NAPLHKGLVGKKWKILDSWRD  FLLKHKKNLKDF  ENVRQPLLDIFDSRVNKAGKVGA
Sbjct: 61  NAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQPLLDIFDSRVNKAGKVGA 120

Query: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHL 180
           VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFR+LNEP+SQHL
Sbjct: 121 VYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRILNEPLSQHL 180

Query: 181 PSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKINICTDDVISVSHYPLV 240
           PSNSRIIGVSNGLEKLVDIQNYVS T DD N +FVVSATDHKKINIC DD+ISVSHYPLV
Sbjct: 181 PSNSRIIGVSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHKKINICADDMISVSHYPLV 240

Query: 241 SMSCVGMICEALEHKWIVEPPSHN 265
           SMSCVGMICEALEHKWIVEP  HN
Sbjct: 241 SMSCVGMICEALEHKWIVEPLLHN 263

[Close]

BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A1S3C5G9 (ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 GN=LOC103496687 PE=3 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.6e-112
Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 45  VMNEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPL 104
           +MNEKPQE RVIFVLDNAPLHKGLVGKKWKILDSWRD  FLLKHKKNLKDF  ENVRQPL
Sbjct: 1   MMNEKPQESRVIFVLDNAPLHKGLVGKKWKILDSWRDHQFLLKHKKNLKDFCPENVRQPL 60

Query: 105 LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT 164
           LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT
Sbjct: 61  LDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDT 120

Query: 165 NEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKI 224
           NEVLFR+LNEP+SQHLPSNSRIIGVSNGLEKLVDIQNYVS T DD N +FVVSATDHKKI
Sbjct: 121 NEVLFRILNEPLSQHLPSNSRIIGVSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHKKI 180

Query: 225 NICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN 265
           NIC DD+ISVSHYPLVSMSCVGMICEALEHKWIVEP  HN
Sbjct: 181 NICADDMISVSHYPLVSMSCVGMICEALEHKWIVEPLLHN 219

[Close]

BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A5D3CR92 (Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00200 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.6e-77
Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 103 PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE 162
           PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE
Sbjct: 58  PLLDIFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAE 117

Query: 163 DTNEVLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHK 222
           DTNEVLFR+LNEP+SQHLPSNSR   VSNGLEKLVDIQNYVS T DD N +FVVSATDHK
Sbjct: 118 DTNEVLFRILNEPLSQHLPSNSR---VSNGLEKLVDIQNYVS-TCDDKNFVFVVSATDHK 177

Query: 223 KINICTDDVISVSHYPLVSMSCVGMICEALEHKWIVEPPSHN 265
           KINIC DD+ISVSHYPLVSMSCVGMICEALEHKWIVEP  HN
Sbjct: 178 KINICADDMISVSHYPLVSMSCVGMICEALEHKWIVEPLLHN 215

[Close]

BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: A0A6J5TWQ3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10640 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.7e-66
Identity = 137/250 (54.80%), Postives = 176/250 (70.40%), Query Frame = 0


Query: 8   KSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKPQEPRVIFVLDNAPLHKG 67
           +SQ+ SS+   +K +  E   +   +E    + +L    N    + R IFV++NA L KG
Sbjct: 14  QSQNCSSRCRTVKPKLEEE--KSTTMEKTEDDATLTLTHNNANDKVRAIFVVENASLTKG 73

Query: 68  LVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKAGKVGAVYVKIDD 127
            V K+WKILDS  D DFLLK KK+L DFR   V + L  I DS++NKAG VGAVYVK D 
Sbjct: 74  FVRKRWKILDSEEDADFLLKQKKDLNDFRPGRVYEALRAILDSKLNKAGMVGAVYVKTDQ 133

Query: 128 GVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEPVSQHLPSNSRII 187
           GVLFEIKPH RIPRT  RFCG+IL+LL  +CIR +DTNE+L RV+ EPV++HLP NSR++
Sbjct: 134 GVLFEIKPHVRIPRTCKRFCGVILELLGHKCIRDKDTNEILMRVIEEPVTRHLPVNSRVV 193

Query: 188 GVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKIN-ICTDDVISVSHYPLVSMSCVG 247
           G+S   EKLVDI  YV++ +D++NL+FVV A  H KI+   TDD ISVS+YPL +  CVG
Sbjct: 194 GLSYSSEKLVDIDEYVNSGSDELNLVFVVGAMVHGKISKEYTDDFISVSNYPLSAQYCVG 253

Query: 248 MICEALEHKW 257
           +ICE+LEHKW
Sbjct: 254 LICESLEHKW 261

[Close]

BLAST of Clc07G06580 vs. ExPASy TrEMBL
Match: M5Y7H9 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019713mg PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 128/211 (60.66%), Postives = 159/211 (75.36%), Query Frame = 0


Query: 47  NEKPQEPRVIFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLD 106
           N    + R IFV++NA L KG V K+WKILDS  D DFLLK KK+L DFR   V + L  
Sbjct: 26  NNANDKVRAIFVVENASLTKGFVRKRWKILDSEEDADFLLKQKKDLNDFRPGRVYEALRA 85

Query: 107 IFDSRVNKAGKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNE 166
           I DS++NKAG VGAVYVK D GVLFEIKPH RIPRT  RFCG+IL+LL  +CIR +DTNE
Sbjct: 86  ILDSKLNKAGMVGAVYVKTDQGVLFEIKPHVRIPRTCKRFCGVILELLGHKCIRDKDTNE 145

Query: 167 VLFRVLNEPVSQHLPSNSRIIGVSNGLEKLVDIQNYVSATNDDMNLIFVVSATDHKKIN- 226
           +L RV+ EPV++HLP NSR++G+S   EKLVDI  YV++ +D++NL+FVV A  H KI+ 
Sbjct: 146 ILMRVVEEPVTRHLPVNSRVVGLSYSSEKLVDIDEYVNSGSDELNLVFVVGAMVHGKISK 205

Query: 227 ICTDDVISVSHYPLVSMSCVGMICEALEHKW 257
             TDD ISVS+YPL +  C+G+ICE+LEHKW
Sbjct: 206 EYTDDFISVSNYPLSAQYCIGLICESLEHKW 236

[Close]

BLAST of Clc07G06580 vs. TAIR 10
Match: AT3G57000.1 (nucleolar essential protein-related )

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-44
Identity = 103/264 (39.02%), Postives = 157/264 (59.47%), Query Frame = 0


Query: 4   QKRRKSQSSSSKLARLKQERVENLGELKNVEDVNTNGSLLDVMNEKP--------QEPRV 63
           ++++K++ SS K  +    R E   + + V  V    +  D++   P        ++  +
Sbjct: 33  EQKQKARESSKKAKKESTSRAEEDNDEEEV-TVEATAAAEDIVGGIPIVLNAPNKEKSGI 92

Query: 64  IFVLDNAPLHKGLVGKKWKILDSWRDQDFLLKHKKNLKDFRLENVRQPLLDIFDSRVNKA 123
           +FVL+ A L    VGK +++L+S    +FL K+ +N  D+R +   Q LL I DS VNKA
Sbjct: 93  VFVLEKASLEVAKVGKTYQLLNSDDHANFLKKNNRNPADYRPDITHQALLMILDSPVNKA 152

Query: 124 GKVGAVYVKIDDGVLFEIKPHARIPRTYNRFCGLILDLLKKRCIRAEDTNEVLFRVLNEP 183
           G++ AVYV+ + GVLFE+KPH RIPRT+ RF G++L LL+K  I A ++ E L R +  P
Sbjct: 153 GRLKAVYVRTEKGVLFEVKPHVRIPRTFKRFAGIMLQLLQKLSITAVNSREKLLRCVKNP 212

Query: 184 VSQ-HLPSNSRIIGVSNGLEKLVDIQNYVSAT-NDDMNLIFVVSATDHKKINI-CTDDVI 243
           + + HLP NS  IG S+  EKLV++Q +++   +DD + +FVV A  H KI+    D+ +
Sbjct: 213 IEEHHLPVNSHRIGFSHSSEKLVNMQKHLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFV 272

Query: 244 SVSHYPLVSMSCVGMICEALEHKW 257
           SVS YPL +  C+  ICEAL   W
Sbjct: 273 SVSEYPLSAAYCISRICEALATNW 295

The following BLAST results are available for this feature:

BLAST of Clc07G06580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032138.1	2.8e-129	90.15	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuw...	[more]
XP_008456875.1	5.4e-112	92.27	PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo...	[more]
XP_038891816.1	2.7e-95	93.33	ribosomal RNA small subunit methyltransferase nep-1-like [Benincasa hispida]	[more]
TYK14383.1	7.4e-77	91.36	ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuw...	[more]
CAB4267774.1	7.6e-66	54.80	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Clc07G06580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O35130	7.0e-30	36.27	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=E...	[more]
Q92979	2.3e-28	34.31	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EM...	[more]
Q9XX15	4.3e-27	33.33	Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans OX...	[more]
Q9P8P7	5.2e-25	33.96	Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans OX=5476 G...	[more]
Q06287	5.2e-25	33.49	Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (...	[more]

BLAST of Clc07G06580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNC0	1.4e-129	90.15	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. mak...	[more]
A0A1S3C5G9	2.6e-112	92.27	ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo OX=3656 ...	[more]
A0A5D3CR92	3.6e-77	91.36	Ribosomal RNA small subunit methyltransferase NEP1-like OS=Cucumis melo var. mak...	[more]
A0A6J5TWQ3	3.7e-66	54.80	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10640 PE=3 S...	[more]
M5Y7H9	1.4e-65	60.66	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019713m...	[more]

BLAST of Clc07G06580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57000.1	3.9e-44	39.02	nucleolar essential protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	PANTHER	PTHR12636:SF13	NUCLEOLAR ESSENTIAL-RELATED-LIKE PROTEIN	coord: 36..257
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 55..258 e-value: 1.0E-58 score: 200.1
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PFAM	PF03587	EMG1	coord: 57..253 e-value: 1.8E-42 score: 145.3
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	PANTHER	PTHR12636	NEP1/MRA1	coord: 36..257
IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	CDD	cd18088	Nep1-like	coord: 55..253 e-value: 4.89625E-61 score: 189.663
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 43..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G06580.2	Clc07G06580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0070037	rRNA (pseudouridine) methyltransferase activity