Clc07G06480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G06480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Clavata3/esr-related 16, putative
Location	ClcChr07: 12760615 .. 12761603 (-)
RNA-Seq Expression	Clc07G06480
Synteny	Clc07G06480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGGTTGAAATGAAATTGGAACTTGAGCCTTTCTTAAACTTTCTCTAGTGTAAGAGAGAGGAAGAGAAAATCAATAAAAGAAATACATAAGAAGGTTCTCAAGAATCAAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAAAACACATACCCAACTTTTATCTCTCTTTCTCTCTCTCTCTTTCATTCTTCACCATTTTTCCTTCCATTTCCAAACTCTTCAAAGAATCCCCCAAAAAATAAGCCTGTTTTTTTTTTTTTTTTGGAGAGTGTGGTGGGTGTGTGGCAATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAGGCCCATAAGGGCCCAATAACAACAACCCTACATCTGTTTATTCTGCTACAGATCTATTTCTTCTGTAAGAGAAGCTTTTAAATTCTTTTTTTTTTTTTCTTTTTCTTTTTCTTTTTCTTTCTTTTTTTATTTATAAAATTAGTTAGAAATTTGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAAATAAAAAAAATAAAAACAAATAAAAAATTAATTTAATGAAAAAGGGACCAAAAAAAAGGCTAGTGATAATGCTCTTGTTTCTTCTTCTAAGCTTGTGGTTTTTTTTCCCTCCTTCTGTAGTATGTCTTGCATGTGTTTCAATTTATTGCTTTTGTAGTTAATTTGTTCATCC

mRNA sequence

AAGGGGTTGAAATGAAATTGGAACTTGAGCCTTTCTTAAACTTTCTCTAGTGTAAGAGAGAGGAAGAGAAAATCAATAAAAGAAATACATAAGAAGGTTCTCAAGAATCAAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAAAACACATACCCAACTTTTATCTCTCTTTCTCTCTCTCTCTTTCATTCTTCACCATTTTTCCTTCCATTTCCAAACTCTTCAAAGAATCCCCCAAAAAATAAGCCTGTTTTTTTTTTTTTTTTGGAGAGTGTGGTGGGTGTGTGGCAATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAGGCCCATAAGGGCCCAATAACAACAACCCTACATCTGTTTATTCTGCTACAGATCTATTTCTTCTGTAAGAGAAGCTTTTAAATTCTTTTTTTTTTTTTCTTTTTCTTTTTCTTTTTCTTTCTTTTTTTATTTATAAAATTAGTTAGAAATTTGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAAATAAAAAAAATAAAAACAAATAAAAAATTAATTTAATGAAAAAGGGACCAAAAAAAAGGCTAGTGATAATGCTCTTGTTTCTTCTTCTAAGCTTGTGGTTTTTTTTCCCTCCTTCTGTAGTATGTCTTGCATGTGTTTCAATTTATTGCTTTTGTAGTTAATTTGTTCATCC

Coding sequence (CDS)

ATGAGAGTGGGTGTAGAAAGAGGAAGAAACGGCGGTAACGGAAGGACGCAAGCCGGAGCAGTGGCGGCACTTTTCTTCATATGGCTTATTTTGGTGGTGTCTCGAATGAGATTATCGTCCGCTGCCGTTAAAGAGGTTAACGGCCGGACGTTAACCAAATCCACCGCCCTTCACCGGAAGGCTCACATTTTCGAAACGGAAGAGATCTTTAAACCGCCAGCCGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTGCAGACATTATATACGAAGATGATAAACGGGTGGTCCACACCGGCCCAAATCCGCTTCACAACTAG

Protein sequence

MRVGVERGRNGGNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN

Homology

[Close]

BLAST of Clc07G06480 vs. NCBI nr
Match: KAA0063335.1 (putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative Clavata3/esr-related 16 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.1e-46
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGR-TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
           MRVGVERGRNGG GR  +AGAVAA+FFIWLIL+VSRMRLSSAA+KEVN R L KST LHR
Sbjct: 1   MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 60

Query: 61  KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Clc07G06480 vs. NCBI nr
Match: KAE8648231.1 (hypothetical protein Csa_018474 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1  MRVGVERGRNGGNGRT-QAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
          MRVGVERGRNGG GR  +AGAVAA+FFIWLILVVSRMRLSSAA KEVNGR LTKST LHR
Sbjct: 1  MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61 KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRV 99
          K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKR+
Sbjct: 61 KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 99

[Close]

BLAST of Clc07G06480 vs. NCBI nr
Match: KAG6600814.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031451.1 CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 8.3e-35
Identity = 83/112 (74.11%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MRVGVERGRNGGNG--RTQAGAV--AALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTA 60
           MRVGVERGRNGGNG  R   GAV  AA+FFI LI V+SRM LSSAAV+ VN  TLTKS  
Sbjct: 1   MRVGVERGRNGGNGTKRQAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60

Query: 61  LHRKAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           LHRK H+FETEE+FKPPAGFK+H      DVADI+YEDDKRVVHTGPNPLHN
Sbjct: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 107

[Close]

BLAST of Clc07G06480 vs. NCBI nr
Match: KDO64624.1 (hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIF- 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 25  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 84

Query: 72  -KPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 85  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Clc07G06480 vs. NCBI nr
Match: KAE8022866.1 (hypothetical protein FH972_008627 [Carpinus fangiana])

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-09
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 15  RTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFKPPA 74
           R ++GA AA+F +W+ L+ +++ L  AA  E  GR +       RK    ET  +F  P+
Sbjct: 9   RARSGASAAIFLLWVFLISTQIALYCAAAHEDTGRFIRSPP---RKERFSETTPLFHAPS 68

Query: 75  GF----KVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                 ++ GG +N D  D +Y DDKR++HTGPNPLHN
Sbjct: 69  SSAPAQQLLGGAKNGD-PDTLYGDDKRLIHTGPNPLHN 102

[Close]

BLAST of Clc07G06480 vs. ExPASy Swiss-Prot
Match: Q8S8M2 (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-06
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 16  TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKA-HIFETEEIFKPPA 75
           T     AA+FF   I V ++  +SS+A+   +        +L RKA H  E      P A
Sbjct: 16  TSTTGYAAVFFCG-IFVFAQFGISSSALFAPD-----HYPSLPRKAGHFHEMASFQAPKA 75

Query: 76  GFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                G    ++  D +Y+DDKR+VHTGPNPLHN
Sbjct: 76  TVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Clc07G06480 vs. ExPASy TrEMBL
Match: A0A0A0KIX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGRT-QAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
           MRVGVERGRNGG GR  +AGAVAA+FFIWLILVVSRMRLSSAA KEVNGR LTKST LHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Clc07G06480 vs. ExPASy TrEMBL
Match: A0A5A7VBQ7 (Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19870G00010 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MRVGVERGRNGGNGR-TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHR 60
           MRVGVERGRNGG GR  +AGAVAA+FFIWLIL+VSRMRLSSAA+KEVN R L KST LHR
Sbjct: 1   MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 60

Query: 61  KAHIFETEEIFKPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
           K HIFETEE+FKPPAGFKVHGGGENDDV DI+YEDDKRV+HTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Clc07G06480 vs. ExPASy TrEMBL
Match: A0A5N6QZE0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008627 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 15  RTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIFKPPA 74
           R ++GA AA+F +W+ L+ +++ L  AA  E  GR +       RK    ET  +F  P+
Sbjct: 9   RARSGASAAIFLLWVFLISTQIALYCAAAHEDTGRFIRSPP---RKERFSETTPLFHAPS 68

Query: 75  GF----KVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                 ++ GG +N D  D +Y DDKR++HTGPNPLHN
Sbjct: 69  SSAPAQQLLGGAKNGD-PDTLYGDDKRLIHTGPNPLHN 102

[Close]

BLAST of Clc07G06480 vs. ExPASy TrEMBL
Match: A0A067FB56 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIF- 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 25  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 84

Query: 72  -KPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 85  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Clc07G06480 vs. ExPASy TrEMBL
Match: V4UGP5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 12  GNGRTQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKAHIFETEEIF- 71
           G  R  AGA AA FF W+IL+ S + L  A   +  G   T S+   RK   F TE  F 
Sbjct: 14  GRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSARKTRSFNTESTFH 73

Query: 72  -KPPAGFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
             PP+   +    E D+    +YEDDKR++HTGPNPLHN
Sbjct: 74  APPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Clc07G06480 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 16  TQAGAVAALFFIWLILVVSRMRLSSAAVKEVNGRTLTKSTALHRKA-HIFETEEIFKPPA 75
           T     AA+FF   I V ++  +SS+A+   +        +L RKA H  E      P A
Sbjct: 16  TSTTGYAAVFFCG-IFVFAQFGISSSALFAPD-----HYPSLPRKAGHFHEMASFQAPKA 75

Query: 76  GFKVHGGGENDDVADIIYEDDKRVVHTGPNPLHN 109
                G    ++  D +Y+DDKR+VHTGPNPLHN
Sbjct: 76  TVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Clc07G06480 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 89  DIIYEDDKRVVHTGPNPLHN 109
           D IY DDKRVVHTGPNPLHN
Sbjct: 80  DDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Clc07G06480 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 89  DIIYEDDKRVVHTGPNPLHN 109
           D IY DDKRVVHTGPNPLHN
Sbjct: 80  DDIYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of Clc07G06480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063335.1	6.1e-46	85.32	putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative...	[more]
KAE8648231.1	8.6e-40	86.87	hypothetical protein Csa_018474 [Cucumis sativus]	[more]
KAG6600814.1	8.3e-35	74.11	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KDO64624.1	7.8e-09	43.43	hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis]	[more]
KAE8022866.1	7.8e-09	39.80	hypothetical protein FH972_008627 [Carpinus fangiana]	[more]

BLAST of Clc07G06480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M2	8.4e-06	37.23	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of Clc07G06480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6	1.6e-47	88.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]
A0A5A7VBQ7	3.0e-46	85.32	Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5N6QZE0	3.8e-09	39.80	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008627 PE=4 SV=1	[more]
A0A067FB56	3.8e-09	43.43	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706m...	[more]
V4UGP5	3.8e-09	43.43	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 ...	[more]

BLAST of Clc07G06480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01505.1	6.0e-07	37.23	CLAVATA3/ESR-RELATED 16	[more]
AT1G70895.1	1.6e-04	90.00	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.6e-04	90.00	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 9..108
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 9..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G06480.1	Clc07G06480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development