Clc07G05970 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G05970
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	ClcChr07: 9932381 .. 9932935 (+)
RNA-Seq Expression	Clc07G05970
Synteny	Clc07G05970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGATGATAATGTAGATGAAGTAACAATATCGAGCTATTCTCGGGCACCGAGCGTTTCCTGGTTTAAAAATGCCGAATCTCGTCTCAATCATCACTTGTCAGGACTATTCGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTCCATGTTGCTATTCCTGCATCCAGGGGATAATCCGTTTGATGGAATAATTTCTTAGATGTATTGCCACATCTCCAAGGATTAGGACCACTTTTTATAGGTCAGTGGAATCTTTATGCTCAAAACCCTGATTCAAATAATCATTTATTTGGTACTTCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCTGCAAACGCAAAGTTTATGGTTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTATTTTTATTATTATTATTATTATTATTTTTGTGTTGGTCATATGTATAGAACTAACTTCGGGATTGGACACAGTATAAAAGGTCTTTTAGAAGCACATATTCCGTCGGGGGGACGATTGGGGTGTGGACATAAAGGTTGA

mRNA sequence

ATGTTGGATGATAATGTAGATGAAGTAACAATATCGAGCTATTCTCGGGCACCGAGCGTTTCCTGGTTTAAAAATGCCGAATCTCGTCTCAATCATCACTTGTCAGGACTATTCGGATGGAATCTTTATGCTCAAAACCCTGATTCAAATAATCATTTATTTGGTACTTCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCTGCAAACGCAAAGTTTATGTATAAAAGGTCTTTTAGAAGCACATATTCCGTCGGGGGGACGATTGGGGTGTGGACATAAAGGTTGA

Coding sequence (CDS)

ATGTTGGATGATAATGTAGATGAAGTAACAATATCGAGCTATTCTCGGGCACCGAGCGTTTCCTGGTTTAAAAATGCCGAATCTCGTCTCAATCATCACTTGTCAGGACTATTCGGATGGAATCTTTATGCTCAAAACCCTGATTCAAATAATCATTTATTTGGTACTTCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCTGCAAACGCAAAGTTTATGTATAAAAGGTCTTTTAGAAGCACATATTCCGTCGGGGGGACGATTGGGGTGTGGACATAAAGGTTGA

Protein sequence

MLDDNVDEVTISSYSRAPSVSWFKNAESRLNHHLSGLFGWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSLCIKGLLEAHIPSGGRLGCGHKG

Homology

[Close]

BLAST of Clc07G05970 vs. NCBI nr
Match: CAB4076429.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-26
Identity = 73/136 (53.68%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFG 77
           PSVSWFKNAESRLNHHLSGLFG                      WNLYAQNPDS +HLFG
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGSQWNLYAQNPDSGSHLFG 222

Query: 78  TSEGAGTAILTLLGGFHLQTQSL-------------------------------CIKGLL 101
           TS+GAGTAILTLLGGFH QTQSL                                +K LL
Sbjct: 223 TSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFLFLIAGHMYRTNFGIGHSMKDLL 282

[Close]

BLAST of Clc07G05970 vs. NCBI nr
Match: YP_009945416.1 (photosystem I P700 apoprotein A2 [Sechium edule] >QOE55946.1 photosystem I P700 apoprotein A2 [Sechium edule])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. NCBI nr
Match: YP_004841782.1 (photosystem I P700 apoprotein A2 [Cucumis melo subsp. melo] >YP_009004043.1 photosystem I P700 apoprotein A2 [Cucumis hystrix] >YP_009325988.1 photosystem I P700 chlorophyll a apoprotein A2 [Citrullus lanatus] >YP_009346484.1 photosystem I P700 apoprotein A2 [Cucumis x hytivus] >YP_009348030.1 photosystem I P700 chlorophyll a apoprotein A2 [Citrullus mucosospermus] >YP_009420793.1 photosystem I P700 chlorophyll a apoprotein A2 [Citrullus colocynthis] >YP_009431556.1 photosystem I P700 chlorophyll a apoprotein A2 [Citrullus amarus] >YP_009860072.1 photosystem I P700 apoprotein A2 [Cucumis melo subsp. agrestis] >YP_247598.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis sativus] >Q4VZN4.1 RecName: Full=Photosystem I P700 chlorophyll a apoprotein A2; AltName: Full=PSI-B; AltName: Full=PsaB [Cucumis sativus] >ALF03300.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis sativus var. hardwickii] >APW82460.1 photosystem I P700 chlorophyll a apoprotein A2 [Citrullus lanatus subsp. vulgaris] >ASY96579.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. conomon] >ASY96666.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. makuwa] >ASY96753.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. momordica] >ASY96840.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. dudaim] >ASY96927.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. cantalupo] >ASY97101.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. inodorus] >ASY97275.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo var. flexuosus] >AVE15330.1 PsaB [Cucumis sativus var. sativus] >QJF46382.1 photosystem I P700 chlorophyll a apoprotein A2 [Cucumis melo] >QZL38680.1 photosystem I P700 apoprotein A2 [Citrullus ecirrhosus])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. NCBI nr
Match: QZL38592.1 (photosystem I P700 apoprotein A2 [Citrullus naudinianus])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. NCBI nr
Match: KAF9825350.1 (hypothetical protein H0E87_005072 [Populus deltoides])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot
Match: Q4VZN4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-28
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot
Match: Q3BAP1 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=psaB PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27
Identity = 76/159 (47.80%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLEVLPYPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDS+NHLFGTS+GAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFMGQWNLYAQNPDSSNHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDIAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot
Match: P58385 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=psaB PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-27
Identity = 75/159 (47.17%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGEYVRWNNFLSILPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAI 282

[Close]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot
Match: Q6EW49 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Nymphaea alba OX=34301 GN=psaB PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-27
Identity = 75/159 (47.17%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWAGHLVHVAIPGSRGEYVRWNNFLDVLPYPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDIAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot
Match: Q14FF8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Populus alba OX=43335 GN=psaB PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-27
Identity = 75/159 (47.17%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy TrEMBL
Match: A0A6S7KZ29 (Photosystem I OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5170 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 73/136 (53.68%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFG 77
           PSVSWFKNAESRLNHHLSGLFG                      WNLYAQNPDS +HLFG
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGSQWNLYAQNPDSGSHLFG 222

Query: 78  TSEGAGTAILTLLGGFHLQTQSL-------------------------------CIKGLL 101
           TS+GAGTAILTLLGGFH QTQSL                                +K LL
Sbjct: 223 TSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFLFLIAGHMYRTNFGIGHSMKDLL 282

[Close]

BLAST of Clc07G05970 vs. ExPASy TrEMBL
Match: A0A218KG43 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus var. hardwickii OX=319220 GN=psaB PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.2e-26
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy TrEMBL
Match: A0A6H0ERZ3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii OX=3677 GN=psaB PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.2e-26
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy TrEMBL
Match: G3ETY4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis melo subsp. melo OX=412675 GN=psaB PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.2e-26
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. ExPASy TrEMBL
Match: A0A1X9Q1T8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.2e-26
Identity = 78/159 (49.06%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           PSVSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAF 282

[Close]

BLAST of Clc07G05970 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-27
Identity = 73/159 (45.91%), Postives = 77/159 (48.43%), Query Frame = 0


Query: 18  PSVSWFKNAESRLNHHLSGLFG-------------------------------------- 77
           P VSWFKNAESRLNHHLSGLFG                                      
Sbjct: 163 PRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGL 222

Query: 78  -------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-------------- 101
                  WNLYAQNPDS++HLFGTS+G+GTAILTLLGGFH QTQSL              
Sbjct: 223 GPLFTGQWNLYAQNPDSSSHLFGTSQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAI 282

The following BLAST results are available for this feature:

BLAST of Clc07G05970 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4076429.1	8.5e-26	53.68	unnamed protein product [Lactuca saligna]	[more]
YP_009945416.1	1.9e-25	49.06	photosystem I P700 apoprotein A2 [Sechium edule] >QOE55946.1 photosystem I P700 ...	[more]
YP_004841782.1	1.9e-25	49.06	photosystem I P700 apoprotein A2 [Cucumis melo subsp. melo] >YP_009004043.1 phot...	[more]
QZL38592.1	1.9e-25	49.06	photosystem I P700 apoprotein A2 [Citrullus naudinianus]	[more]
KAF9825350.1	1.9e-25	49.06	hypothetical protein H0E87_005072 [Populus deltoides]	[more]

BLAST of Clc07G05970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN4	2.5e-28	49.06	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q3BAP1	2.1e-27	47.80	Photosystem I P700 chlorophyll a apoprotein A2 OS=Phalaenopsis aphrodite subsp. ...	[more]
P58385	8.0e-27	47.17	Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=ps...	[more]
Q6EW49	8.0e-27	47.17	Photosystem I P700 chlorophyll a apoprotein A2 OS=Nymphaea alba OX=34301 GN=psaB...	[more]
Q14FF8	8.0e-27	47.17	Photosystem I P700 chlorophyll a apoprotein A2 OS=Populus alba OX=43335 GN=psaB ...	[more]

BLAST of Clc07G05970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7KZ29	4.1e-26	53.68	Photosystem I OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5170 PE=3 SV=1	[more]
A0A218KG43	9.2e-26	49.06	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus var. hardwicki...	[more]
A0A6H0ERZ3	9.2e-26	49.06	Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii OX=367...	[more]
G3ETY4	9.2e-26	49.06	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis melo subsp. melo OX=41...	[more]
A0A1X9Q1T8	9.2e-26	49.06	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa...	[more]

BLAST of Clc07G05970 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	4.8e-27	45.91	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 8..40 e-value: 4.9E-6 score: 26.5
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 41..89 e-value: 1.7E-8 score: 34.9
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 15..89
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 16..40 e-value: 4.1E-7 score: 28.6
None	No IPR available	PANTHER	PTHR30128:SF55	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 17..39 coord: 40..79
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 40..79
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 17..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G05970.2	Clc07G05970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005488	binding