Clc07G05840 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G05840
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chlororespiratory reduction 3
Location	ClcChr07: 9163903 .. 9166202 (-)
RNA-Seq Expression	Clc07G05840
Synteny	Clc07G05840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGCAATGGCTTCCTTCCTCTGCATTTCTGTAACCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACCACTCTCACTCTCCTCCTCTCAAAACCAATGGCGCCGCCGAGACCATTCCGATCAGCAATCCACGGCTACGGCGCCGGCTTCCCAAACCCCGTCGCCCCTCCGTCATTGAGATCGAACGTGCTATTGGTGGCGGAAGGTTCAGAGACGCCGACCCTAGGCAAGTCTCAGAGTTCCATTTGTCTCTCAATATCTGTTATTTTCATTTCTGTGGTGTGTAATGCAACATTTTGATTCTCAGGGATTTGGAAGAAGATAGGAAGGCTACATTTGACATGTTTTTGATGAATTTTACGGGAAAATATGAAGGGCCACTCATGAAAAAGCTTCGTGAGACAGGGGAATGGGTAACTGATCAAACTGAAACCAAATTTCAAGCTTCGGGTAACCATTTTTCTGTCCCTCTTTAACTTCTTGATGCTATTACTCATAGATTTCATTGATTGTTTTCTATAAGGTAATTCATTCTCTCAAAACCACTTTACACAGTCATAACATAAACGTTTGATGCTTTTGACCTCAATAATTGAACCTCATGTCTTAGCAAGCAAACTCTCTTCACCTACAAAGGTCAATTTTGTTTTCAAATTATATTATTTCAATCTCATGTGTAAAGATGTAAAATATTCGACTGTCATTCCCAATACCCGGTTTGTCAGAAAGAAAAGAAAAAGATATTCAAACCGTCATACTTTGTGGCATTGGAGTTTCCATGGCTTGTTATGCATCTTGTTGGTGAACCAATAGAGCTATCCATTTACTGGATTAGTTGGGTTTGGTGACCAAAGTAATGTTGGTAGTTTACTGTAGTCCTAAATTGGCTAGGAAAGAGAAAAATCACGAGTATATAAATGAGAGGCCACATTTACATTGATACGAAGTCTTTTAGGTAAAACAGGAAACGAAGTCATGAGAGCTTATGGTGGACATTATCATACCACTGTAAAGATATGTTGAGGATGTTGAGGTCCATTGTCTGTAACAAGCCATATTAAAGACATGTCCTAGACTTAGCCTTGTTTGATGTGCTCCAAAAGAAGAGAAGAACTAGCTTGGATGAGAGTAAACTCTTGATAAAGCTAGAAAGGTGAACAGTAGATGACTATCTAAGGATAGATTATGTGGTCCTTTGTTTGCGGAGAGGACTATTGGGAGTGTGATCAAAGTCTCATATTGCCTAGGAAAGAGAAGATCACGGGCGTATAAGTAAAAGACAATAATCTCTATTGGTAGAGGCCTTTTGGGTGAAACAAAGAACAAAGTTATGAGGGTTGGTTGAAGTGGACAACATCATATCATTATGGAGATCTATTGTAGTCCGTGACAAGTAGTCCATTGTGGAATTATGGAAGGAAAACTCTCAACGCTACTTATCCAAAACAACCACGCTCTTATTGATACAAATCTTGTTTGCTTTGAAATTTGATAATTGCTTCTCGTTCTCCATTTAGCCAAGTGATTCGAAGGATTTTTGAATTCAAATTAATTTTTCTTTTTATTTTCTTGTAAATTGGAAGAATTGAGCCAATGTTGTTGCAATGGTCGACTTAGAGATAAACATCTTGCTAGCCATGAAGTGATGGGTTCACGAACAAAACATAAGAGCACACAAGCCAAGAAGAAGATGGTCTCTTAAATAACTTATCCTTTTGGAAAGGAGGGAGACAAATGACTCCTTGTTCATGGGTACATTAGAAAAGATAAAATTAATACAGATACATGCATAACATATATTTGTATATATCTAATACTTTACTTTCATACACTTGAAAATTCATAGTTCATTAATCTAATAATACATCAAGTGATTAAGCTAGCTTATTTCCAAGTCCCATGTTGCTCGGTTACCCCTTCAAAGAGAACATTTATTCTGTCTTATTTGATTGGTTTGATTTTAATTTGCAGGGAAATGGTTTCTGCTGTTTACATTTCGATGGGTTCTTCCAATTTGGGCATTGTCACTTCTTGTGGCTTCTGGGGTCATTAAGCTACCATTCAATACTCCATTCCTAAATGAACTTCTCATGTAATAAAGTAAACTTAAATTACAAGTTTAGTCTCTAAATTTTCGGTTTGTGTCAAATAGTTCAATAAATGTTCAGTTTTGTGTCTAATCGGTAATTGAAGTTTACAAAAGTGTCTAAAGTCCATAAACTTTCAATTTTATGTATAATAAGTTCTAACTTTCAATTTTGTGACTAGGTTACTTAACCTATTTCAACATT

mRNA sequence

ATGGAACAGCAATGGCTTCCTTCCTCTGCATTTCTGTAACCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACCACTCTCACTCTCCTCCTCTCAAAACCAATGGCGCCGCCGAGACCATTCCGATCAGCAATCCACGGCTACGGCGCCGGCTTCCCAAACCCCGTCGCCCCTCCGTCATTGAGATCGAACGTGCTATTGGTGGCGGAAGGTTCAGAGACGCCGACCCTAGGGATTTGGAAGAAGATAGGAAGGCTACATTTGACATGTTTTTGATGAATTTTACGGGAAAATATGAAGGGCCACTCATGAAAAAGCTTCGTGAGACAGGGGAATGGGTAACTGATCAAACTGAAACCAAATTTCAAGCTTCGGGGAAATGGTTTCTGCTGTTTACATTTCGATGGGTTCTTCCAATTTGGGCATTGTCACTTCTTGTGGCTTCTGGGGTCATTAAGCTACCATTCAATACTCCATTCCTAAATGAACTTCTCATGTAATAAAGTAAACTTAAATTACAAGTTTAGTCTCTAAATTTTCGGTTTGTGTCAAATAGTTCAATAAATGTTCAGTTTTGTGTCTAATCGGTAATTGAAGTTTACAAAAGTGTCTAAAGTCCATAAACTTTCAATTTTATGTATAATAAGTTCTAACTTTCAATTTTGTGACTAGGTTACTTAACCTATTTCAACATT

Coding sequence (CDS)

ATGGCTTCCTTCCTCTGCATTTCTGTAACCAAAAATGTGGCTCTCGCTTCACTCAATCCCAACGACCACTCTCACTCTCCTCCTCTCAAAACCAATGGCGCCGCCGAGACCATTCCGATCAGCAATCCACGGCTACGGCGCCGGCTTCCCAAACCCCGTCGCCCCTCCGTCATTGAGATCGAACGTGCTATTGGTGGCGGAAGGTTCAGAGACGCCGACCCTAGGGATTTGGAAGAAGATAGGAAGGCTACATTTGACATGTTTTTGATGAATTTTACGGGAAAATATGAAGGGCCACTCATGAAAAAGCTTCGTGAGACAGGGGAATGGGTAACTGATCAAACTGAAACCAAATTTCAAGCTTCGGGGAAATGGTTTCTGCTGTTTACATTTCGATGGGTTCTTCCAATTTGGGCATTGTCACTTCTTGTGGCTTCTGGGGTCATTAAGCTACCATTCAATACTCCATTCCTAAATGAACTTCTCATGTAA

Protein sequence

MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEIERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM

Homology

[Close]

BLAST of Clc07G05840 vs. NCBI nr
Match: XP_038893324.1 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida])

HSP 1 Score: 303.9 bits (777), Expect = 8.3e-79
Identity = 149/163 (91.41%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           MASF  IS+TKNV LASLNP D SHSPP KTNGAAETIPI+NPRLRRRLPKPRRPSVIEI
Sbjct: 1   MASFFSISLTKNVVLASLNPKDDSHSPPPKTNGAAETIPINNPRLRRRLPKPRRPSVIEI 60

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIGGGRFRDADPRDLEEDRKA FDMFLM+FTGKYEGP+MKKLRETGEWVT+QTETKFQ
Sbjct: 61  ERAIGGGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGPVMKKLRETGEWVTNQTETKFQ 120

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM 164
           ASGKWFLLFTF+WVLPIWALSLLVASG+IKLPFNTPFLNELLM
Sbjct: 121 ASGKWFLLFTFQWVLPIWALSLLVASGIIKLPFNTPFLNELLM 163

[Close]

BLAST of Clc07G05840 vs. NCBI nr
Match: XP_023511915.1 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 5.0e-76
Identity = 147/162 (90.74%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           MA F CISVTKNVALASLNP+D SHSPP KTNGAAETIPI NPRLRRRLPKPRRPSVIEI
Sbjct: 1   MACFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPIKNPRLRRRLPKPRRPSVIEI 60

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIG GRFRDADPRDLEEDRKA FDMFLM+FTGKYEG LMKKLRETGEWVTDQTETKFQ
Sbjct: 61  ERAIGAGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQ 120

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELL 163
           ASGK FLLFTF+WVLPIWA SLLVASGVIKLPFNTPFL++LL
Sbjct: 121 ASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL 162

[Close]

BLAST of Clc07G05840 vs. NCBI nr
Match: KAG6600832.1 (putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 3.3e-75
Identity = 145/162 (89.51%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           MA F CISVTKNVA+ASLNP+D SHSPP KTNGAA+TIPI+NPRLRRRLPKPRRPSVIEI
Sbjct: 174 MACFSCISVTKNVAIASLNPSDDSHSPPPKTNGAAKTIPITNPRLRRRLPKPRRPSVIEI 233

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIG GRFRDADPRDLEEDRKA FDMFLM+FTGKYEG LMKKLRETGEWVTDQTETKFQ
Sbjct: 234 ERAIGAGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQ 293

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELL 163
           ASGK FLLFTF+WVLPIWA SLLVASGVIKLPFNTPFL++LL
Sbjct: 294 ASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL 335

[Close]

BLAST of Clc07G05840 vs. NCBI nr
Match: XP_022942899.1 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 3.3e-75
Identity = 145/162 (89.51%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           MA F CISVTKNVA+ASLNP+D SHSPP KTNGAA+TIPI+NPRLRRRLPKPRRPSVIEI
Sbjct: 1   MACFSCISVTKNVAIASLNPSDDSHSPPPKTNGAAKTIPITNPRLRRRLPKPRRPSVIEI 60

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIG GRFRDADPRDLEEDRKA FDMFLM+FTGKYEG LMKKLRETGEWVTDQTETKFQ
Sbjct: 61  ERAIGAGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQ 120

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELL 163
           ASGK FLLFTF+WVLPIWA SLLVASGVIKLPFNTPFL++LL
Sbjct: 121 ASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL 162

[Close]

BLAST of Clc07G05840 vs. NCBI nr
Match: XP_008464703.1 (PREDICTED: probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 3.6e-74
Identity = 145/167 (86.83%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPN----DHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPS 60
           MAS   IS+TKNVALASLNPN     HSHSPPLKTN AA+TIPI  PRLR +L  PRRPS
Sbjct: 12  MASLFSISITKNVALASLNPNRHSHSHSHSPPLKTNDAADTIPIKTPRLRPKLLNPRRPS 71

Query: 61  VIEIERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTE 120
           VIEIERAIGGGRFRDADPRDLEED+KA FDMFLM+FTGKYEGPLMKKLRETGEWVT+QTE
Sbjct: 72  VIEIERAIGGGRFRDADPRDLEEDKKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTE 131

Query: 121 TKFQASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM 164
           TKFQASGKWFLLFTF+WVLPIWALSLLVASGVIKLPFNTPFLNELLM
Sbjct: 132 TKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFNTPFLNELLM 178

[Close]

BLAST of Clc07G05840 vs. ExPASy Swiss-Prot
Match: Q9ZVE7 (Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR3 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-24
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 28  PLKTNGAAETIPISNPRLRRRLPKPRRPSVIEIERAIGGGRFRDADPRDLEEDRKATFDM 87
           PLK    ++ +   N + R       +PS+ +IERA G G +RD++    E D    FD 
Sbjct: 47  PLKLRQVSKQMGSQNQQRR-----GNKPSIAQIERAFGSGSYRDSEG---EMDMNTVFDE 106

Query: 88  FLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQASGKWFLLFTFRWVLPIWALSLLVASG 147
            L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT +W+LPIW +SLLVA G
Sbjct: 107 LLLGHANKFESKIEKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACG 166

Query: 148 VIKLPFNTPFLNELLM 164
           VIKLPF+ PFL++L+M
Sbjct: 167 VIKLPFSIPFLDDLIM 174

[Close]

BLAST of Clc07G05840 vs. ExPASy TrEMBL
Match: A0A6J1FSN9 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447789 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 145/162 (89.51%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           MA F CISVTKNVA+ASLNP+D SHSPP KTNGAA+TIPI+NPRLRRRLPKPRRPSVIEI
Sbjct: 1   MACFSCISVTKNVAIASLNPSDDSHSPPPKTNGAAKTIPITNPRLRRRLPKPRRPSVIEI 60

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIG GRFRDADPRDLEEDRKA FDMFLM+FTGKYEG LMKKLRETGEWVTDQTETKFQ
Sbjct: 61  ERAIGAGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTETKFQ 120

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELL 163
           ASGK FLLFTF+WVLPIWA SLLVASGVIKLPFNTPFL++LL
Sbjct: 121 ASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL 162

[Close]

BLAST of Clc07G05840 vs. ExPASy TrEMBL
Match: A0A1S3CM65 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502523 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 145/167 (86.83%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPN----DHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPS 60
           MAS   IS+TKNVALASLNPN     HSHSPPLKTN AA+TIPI  PRLR +L  PRRPS
Sbjct: 12  MASLFSISITKNVALASLNPNRHSHSHSHSPPLKTNDAADTIPIKTPRLRPKLLNPRRPS 71

Query: 61  VIEIERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTE 120
           VIEIERAIGGGRFRDADPRDLEED+KA FDMFLM+FTGKYEGPLMKKLRETGEWVT+QTE
Sbjct: 72  VIEIERAIGGGRFRDADPRDLEEDKKAAFDMFLMSFTGKYEGPLMKKLRETGEWVTNQTE 131

Query: 121 TKFQASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM 164
           TKFQASGKWFLLFTF+WVLPIWALSLLVASGVIKLPFNTPFLNELLM
Sbjct: 132 TKFQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFNTPFLNELLM 178

[Close]

BLAST of Clc07G05840 vs. ExPASy TrEMBL
Match: A0A6J1J6W0 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483096 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 145/165 (87.88%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLR---RRLPKPRRPSV 60
           MA F CISVTKNVALASLNP+D SHSPP KTNGAAETIP++NP+LR   RRLPKPRRPSV
Sbjct: 1   MACFFCISVTKNVALASLNPSDDSHSPPPKTNGAAETIPVNNPQLRRRQRRLPKPRRPSV 60

Query: 61  IEIERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTET 120
           IEIERAIG GRFRDADPRDLEEDRKA FDMFLM+FTGKYEG LMKKLRETGEWVTDQTET
Sbjct: 61  IEIERAIGAGRFRDADPRDLEEDRKAAFDMFLMSFTGKYEGALMKKLRETGEWVTDQTET 120

Query: 121 KFQASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELL 163
           KFQASGK FLLFTF+WVLPIWA SLLVASGVIKLPFNTPFL++LL
Sbjct: 121 KFQASGKSFLLFTFQWVLPIWAFSLLVASGVIKLPFNTPFLDQLL 165

[Close]

BLAST of Clc07G05840 vs. ExPASy TrEMBL
Match: A0A0A0KJA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G033460 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 140/165 (84.85%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLN--PNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVI 60
           MAS   IS TKNVA ASLN  P+ HSHSPPLKTN AA TIPI+NPRLRR+L  P RPS+I
Sbjct: 1   MASLFSISFTKNVAFASLNPDPHSHSHSPPLKTNLAAHTIPINNPRLRRKLLNPPRPSLI 60

Query: 61  EIERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETK 120
           EIERAIGGGRFRDADPR+LEED+KA FDMFLM+FTGKYE PLMKKLRETGEWVT+QTETK
Sbjct: 61  EIERAIGGGRFRDADPRELEEDKKAAFDMFLMSFTGKYEAPLMKKLRETGEWVTNQTETK 120

Query: 121 FQASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM 164
           FQASGKWFLLFTF+WVLPIWALSLLVASGVIKLPF+TPFLNELLM
Sbjct: 121 FQASGKWFLLFTFQWVLPIWALSLLVASGVIKLPFSTPFLNELLM 165

[Close]

BLAST of Clc07G05840 vs. ExPASy TrEMBL
Match: A0A6J1DQ49 (probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022530 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.9e-69
Identity = 137/163 (84.05%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 1   MASFLCISVTKNVALASLNPNDHSHSPPLKTNGAAETIPISNPRLRRRLPKPRRPSVIEI 60
           +ASF CISVTKNVALASLN +D SHSP  K NG A+TIPI N    RRLPKPRRPSVIEI
Sbjct: 5   LASFSCISVTKNVALASLNGSDDSHSPSPKPNGTADTIPIKNSP-HRRLPKPRRPSVIEI 64

Query: 61  ERAIGGGRFRDADPRDLEEDRKATFDMFLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQ 120
           ERAIG GRFRDADPRDLEEDRK  FDMFL++FT KYEGPLMKKLRETGEWVT+QTETKFQ
Sbjct: 65  ERAIGAGRFRDADPRDLEEDRKTVFDMFLLSFTEKYEGPLMKKLRETGEWVTNQTETKFQ 124

Query: 121 ASGKWFLLFTFRWVLPIWALSLLVASGVIKLPFNTPFLNELLM 164
           ASGKWFLLFTF+W+LPIWALSLLVASGVIKLPF+TPFL+ELLM
Sbjct: 125 ASGKWFLLFTFQWLLPIWALSLLVASGVIKLPFSTPFLDELLM 166

[Close]

BLAST of Clc07G05840 vs. TAIR 10
Match: AT2G01590.1 (chlororespiratory reduction 3 )

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 28  PLKTNGAAETIPISNPRLRRRLPKPRRPSVIEIERAIGGGRFRDADPRDLEEDRKATFDM 87
           PLK    ++ +   N + R       +PS+ +IERA G G +RD++    E D    FD 
Sbjct: 47  PLKLRQVSKQMGSQNQQRR-----GNKPSIAQIERAFGSGSYRDSEG---EMDMNTVFDE 106

Query: 88  FLMNFTGKYEGPLMKKLRETGEWVTDQTETKFQASGKWFLLFTFRWVLPIWALSLLVASG 147
            L+    K+E  + KKLRE GE    +TE K ++SGK  L+FT +W+LPIW +SLLVA G
Sbjct: 107 LLLGHANKFESKIEKKLREIGEIFVARTEPKLRSSGKPVLMFTIQWILPIWIMSLLVACG 166

Query: 148 VIKLPFNTPFLNELLM 164
           VIKLPF+ PFL++L+M
Sbjct: 167 VIKLPFSIPFLDDLIM 174

The following BLAST results are available for this feature:

BLAST of Clc07G05840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893324.1	8.3e-79	91.41	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida]	[more]
XP_023511915.1	5.0e-76	90.74	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp...	[more]
KAG6600832.1	3.3e-75	89.51	putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita a...	[more]
XP_022942899.1	3.3e-75	89.51	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]	[more]
XP_008464703.1	3.6e-74	86.83	PREDICTED: probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1...	[more]

BLAST of Clc07G05840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVE7	7.9e-24	44.12	Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of Clc07G05840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FSN9	1.6e-75	89.51	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Cucurbita moschata...	[more]
A0A1S3CM65	1.7e-74	86.83	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X1 OS=Cucumis...	[more]
A0A6J1J6W0	3.0e-74	87.88	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Cucurbita maxima O...	[more]
A0A0A0KJA3	2.4e-71	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G033460 PE=4 SV=1	[more]
A0A6J1DQ49	2.9e-69	84.05	probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic OS=Momordica charanti...	[more]

BLAST of Clc07G05840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01590.1	5.6e-25	44.12	chlororespiratory reduction 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..38
IPR038931	Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic	PANTHER	PTHR36340	NAD(P)H DEHYDROGENASE SUBUNIT CRR3, CHLOROPLASTIC-RELATED	coord: 3..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G05840.1	Clc07G05840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)