Clc07G05740 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G05740
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr07: 8791019 .. 8793187 (+)
RNA-Seq ExpressionClc07G05740
SyntenyClc07G05740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGATTCAATTTACTCTCCTGTAAAGGCTCAAAGCTGCTCAACTGTAAAGGAAAGGGGCTTATATGCTTTACCTAGTTTAATTGGGAAGAAGCCGGATCTACGCCCTGCCTTGTCGGGTCGAAGTTTAGACCGCTCACACTAGTTCGACCTATAGAAAAGATCATCAGAGAGGAGACAACTCATTTATGATTCCAGCCGAGAAGACTAGTAAAAGGAAGGATCAAGAATGTCATATATTTCAGGAGCAAGATCTGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTGCAATAGTGATGATCTTAGGCTCAACCTAAAGGTCCTATTCATAAGGCTTGGTATGATCTTTTCTAAATTTAAATTATATAATATAATATTAAAATATATCTTAAATTTTCTAAATCGCATTCAAATTCTAAAAGTTGCCTATCTAACATATATTTGGGTTTCATTCAGATCTCATATATCTTTAATATCTAATCTACATATTATTCTCCTCAATATTTAATGCCTACTTAATGTACCAACACATAAAATATGAGCATATATTCCACCTCTAATGTATTCTACTTTCTTTCAACCAAATGATCTATAGATTTTTATATATTTAATGCTGTTTTGAATATTTCAAATCGTACTTTCTTCCAACAAACTTATTCATTTTAAAGTTCTTGTGAGTTAGCGAGAAGAATTTATACATGGGTCTACAAATTAAGTCCAATAATATAAAATTAATTAATTAAACTTATTAATCAACTCATTTCATTCATTAGCCATATAATGTGATGATACTGTGCCTTATGTATTTACCAAATACATTTCACACTGAGTGCACGTGCAAAGAGTTCAACTATTTAGCTCCATGCTCACATACAATAGTTGCAGTAAGGTCAAGGAATATTGATAGCTCCCTAAGTGAGCTATCTTATTGTCTCTAATCTTGCTTGCTTGTAATGTTAATGTGTTTATATCTCTATGTTATTAGAAACTTGAGCAATTCATGTGTTTCAAAGCATTACAGGTTGTTTAGGATTATTTGGAGTAATTAGGAACTAAAAAGAGCAACCAAACTTCAAAAGAGTGAAAAAGGAAAAAGACTAATGGATGGAATTTGTCGCCCAATTCTGTGCCAAATAAATTTTCCTAACTTACCCACAGTAGTAGTGGCAAGCCAGGTCAAACACAGGGAACCCTCGAATTTCACAATTGAAAGTTTTCAATTCAAGTAACCAAAGGGGAGTTTGAGAAACGATTGATTGCAAGAAACTTAAATTGCATGAAAACAAATTGCGCGAATTAAAAAAAAAAGCTAAACTTCAATTGAAGAAGCTCTAGCTTGGGTTATGCGAGATTTTCTTTGTTCGATGTTCTTATCATTCGTTCGTCATTACTAAATCCTTTGAAGCTAGCACCTAATCAATTCAATTGGAAATGCCAAAATTGAATTGTCCTAGTCGACAAGTTAGATTTAAGGAAAATCAATAAAAAGCAAGCAAAATTTGACTAAACCTAACCTCATTAAGTTCAAAGGAAAATTAGGCGGAACATTCAACTGGATAGACCTAGATTGAATGTCCTATCGATTTAATCCTAGGTTGATAAGAACAATGCACATCTGATCTAGATTTGCAAGCTAACCTAACCTATTGCTTCCTATGATTAACATACAACAAATTGTCACGAATTGTAATACAATCAAAATAAACACTAGCGTTACAAATTGATCGTAATTCTTAAAGACTCTGAATTAAATCATGCATACACTTGAATTAAGTTCAAAACCTCAAAAGAACATTAATTACAAGGAAAACCCCTAATACCCAAGCTAGAAAAACGTTACCTTAGCCAATAATCGACATACCGATTATGAAGTCAAAAGGCAGCTGGTCGAGTCTTTTAGAAACCTAGAAATCGAAGGTTTCCTTTTATAAAAACTGTCGCAGCGTCATGGTGCTGACGCGAATTAGGCTGTATAATATTTTCGGAGCGTCGCCGCACCTGCTGCGTTTCTCCAGCGGAACTCCCCGGGAAAAAGCGTCGTGGCACTGTGGCTTTAGGGGCATTTTGGTTATTTTGGAGTTCTATTTCCCAGTTAATGTCGTGGAACTCCGTTTTGGTCCGTTTTAG

mRNA sequence

ATGATCGATTCAATTTACTCTCCTGTAAAGGCTCAAAGCTGCTCAACTGTAAAGGAAAGGGGCTTATATGCTTTACCTAGTTTAATTGGGAAGAAGCCGGATCTACGCCCTGCCTTGTCGGCCGAGAAGACTAGTAAAAGGAAGGATCAAGAATGTCATATATTTCAGGAGCAAGATCTGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGCGTCATGGTGCTGACGCGAATTAGGCTGTATAATATTTTCGGAGCGTCGCCGCACCTGCTGCGTTTCTCCAGCGGAACTCCCCGGGAAAAAGCGTCGTGGCACTGTGGCTTTAGGGGCATTTTGGTTATTTTGGAGTTCTATTTCCCAGTTAATGTCGTGGAACTCCGTTTTGGTCCGTTTTAG

Coding sequence (CDS)

ATGATCGATTCAATTTACTCTCCTGTAAAGGCTCAAAGCTGCTCAACTGTAAAGGAAAGGGGCTTATATGCTTTACCTAGTTTAATTGGGAAGAAGCCGGATCTACGCCCTGCCTTGTCGGCCGAGAAGACTAGTAAAAGGAAGGATCAAGAATGTCATATATTTCAGGAGCAAGATCTGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGCGTCATGGTGCTGACGCGAATTAGGCTGTATAATATTTTCGGAGCGTCGCCGCACCTGCTGCGTTTCTCCAGCGGAACTCCCCGGGAAAAAGCGTCGTGGCACTGTGGCTTTAGGGGCATTTTGGTTATTTTGGAGTTCTATTTCCCAGTTAATGTCGTGGAACTCCGTTTTGGTCCGTTTTAG

Protein sequence

MIDSIYSPVKAQSCSTVKERGLYALPSLIGKKPDLRPALSAEKTSKRKDQECHIFQEQDLLPINKSELPQPKLMELDLKKPFSVMVLTRIRLYNIFGASPHLLRFSSGTPREKASWHCGFRGILVILEFYFPVNVVELRFGPF
Homology
[Close]
BLAST of Clc07G05740 vs. NCBI nr
Match: KAA0040730.1 (hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 39 LSAEKTSKRKDQECHIFQEQDLLPINKSELPQPKLMELDLKKPF 83
          + AEKTS+RKDQECHIFQEQD LPINKSELPQ KLMELDLKKPF
Sbjct: 2  IPAEKTSQRKDQECHIFQEQDQLPINKSELPQLKLMELDLKKPF 45

[Close]
BLAST of Clc07G05740 vs. ExPASy TrEMBL
Match: A0A5A7TBN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00050 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.3e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 39 LSAEKTSKRKDQECHIFQEQDLLPINKSELPQPKLMELDLKKPF 83
          + AEKTS+RKDQECHIFQEQD LPINKSELPQ KLMELDLKKPF
Sbjct: 2  IPAEKTSQRKDQECHIFQEQDQLPINKSELPQLKLMELDLKKPF 45

The following BLAST results are available for this feature:
BLAST of Clc07G05740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040730.11.7e-1188.64hypothetical protein E6C27_scaffold45541G00050 [Cucumis melo var. makuwa][more]
BLAST of Clc07G05740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc07G05740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBN18.3e-1288.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Clc07G05740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G05740.1Clc07G05740.1mRNA