Clc07G02810 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G02810
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	ClcChr07: 2705185 .. 2705748 (-)
RNA-Seq Expression	Clc07G02810
Synteny	Clc07G02810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTTCCCCTCAACCAAGTGGTGGAAGTCATGGATCAACCCCAAGTAGATATGAGTCCCAAAAAAGAAGGGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTTTTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTTACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGAGGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATAACTTCTACTAGTCAAACCAAAGGAGGTGATCAAGATTCTACTTCAAGCTCCATGATGCACTTTGTGCCTTGA

mRNA sequence

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTTCCCCTCAACCAAGTGGTGGAAGTCATGGATCAACCCCAAGTAGATATGAGTCCCAAAAAAGAAGGGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTTTTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTTACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGAGGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATAACTTCTACTAGTCAAACCAAAGGAGGTGATCAAGATTCTACTTCAAGCTCCATGATGCACTTTGTGCCTTGA

Coding sequence (CDS)

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTTCCCCTCAACCAAGTGGTGGAAGTCATGGATCAACCCCAAGTAGATATGAGTCCCAAAAAAGAAGGGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTTTTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAAAATGGTGGTTTACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGAGGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGATAACTTCTACTAGTCAAACCAAAGGAGGTGATCAAGATTCTACTTCAAGCTCCATGATGCACTTTGTGCCTTGA

Protein sequence

MSIEGSISKDFSEGSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSSMMHFVP

Homology

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BLAST of Clc07G02810 vs. NCBI nr
Match: XP_038887380.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 175/191 (91.62%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGG-SHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVP 60
           MSIEGSISKDF EGSSSSSSPQ SGG SHGS TPSRYESQKRRDWNTFCQYLKNQRPPVP
Sbjct: 1   MSIEGSISKDFYEGSSSSSSPQASGGSSHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP 60

Query: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 120
           LSHCN NQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPP PCTCPLRQAWGSLDALIGRLR
Sbjct: 61  LSHCNSNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPNPCTCPLRQAWGSLDALIGRLR 120

Query: 121 AAYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG--DQD 180
           AAYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK TSTSQ KGG  DQ+
Sbjct: 121 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTSTSQPKGGGDDQE 180

Query: 181 STSSSMMHFVP 188
           S+S+SMMHFVP
Sbjct: 181 SSSTSMMHFVP 191

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BLAST of Clc07G02810 vs. NCBI nr
Match: XP_008455303.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 7.8e-89
Identity = 170/191 (89.01%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVPL 60
           MSIEGSISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVPL
Sbjct: 1   MSIEGSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPL 60

Query: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120
           SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG---DQD 180
           AYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK ++ +QTKGG   DQD
Sbjct: 121 AYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQD 180

Query: 181 STSSSMMHFVP 188
           S+S+SMMHFVP
Sbjct: 181 SSSTSMMHFVP 188

[Close]

BLAST of Clc07G02810 vs. NCBI nr
Match: KAA0031563.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVPL 60
           MSIEGSISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVPL
Sbjct: 1   MSIEGSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPL 60

Query: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120
           SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITST-SQTKGG---DQ 180
           AYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK +ST +QTKGG   DQ
Sbjct: 121 AYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQ 180

Query: 181 DSTSSSMMHFVP 188
           DS+S+SMMHFVP
Sbjct: 181 DSSSTSMMHFVP 189

[Close]

BLAST of Clc07G02810 vs. NCBI nr
Match: XP_004136831.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypothetical protein Csa_017146 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.6e-86
Identity = 171/193 (88.60%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MSIEG-SISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVP 60
           MSIEG SISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVP
Sbjct: 1   MSIEGSSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP 60

Query: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 120
           LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 120

Query: 121 AAYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG----D 180
           AAYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+ SQTKG     D
Sbjct: 121 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK-TTISQTKGSGGHDD 180

Query: 181 QDSTSSSMMHFVP 188
           QDS+S+SMMHFVP
Sbjct: 181 QDSSSTSMMHFVP 189

[Close]

BLAST of Clc07G02810 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 4.4e-84
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60
           MS EG+ +KDFSEGSSS+SSPQP     GS PSRYESQKRRDWNTFCQYLKNQRPPVPLS
Sbjct: 1   MSFEGA-TKDFSEGSSSTSSPQPG----GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60

Query: 61  HCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120
           HC+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  HCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSS 180
           YEE+GG PETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG +    S+
Sbjct: 121 YEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAED---ST 179

Query: 181 SMMHFVP 188
           SMMHFVP
Sbjct: 181 SMMHFVP 179

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BLAST of Clc07G02810 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.5e-74
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 22  QPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTK 81
           + SG     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL+FLRYLDQFGKTK
Sbjct: 13  ESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTK 72

Query: 82  VHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVY 141
           VH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFASGAIRVY
Sbjct: 73  VHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVY 132

Query: 142 LREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
           LREVRECQAKARGIPYKKKKKK   T +  GG +DS+SSS
Sbjct: 133 LREVRECQAKARGIPYKKKKKK-KPTPEMGGGREDSSSSS 171

[Close]

BLAST of Clc07G02810 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 112/175 (64.00%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 19  SSPQPSGGSHGSTP------------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQ 78
           S P PS  + G  P            SRYESQKRRDWNTF QYL+N RPP+ L+ C+   
Sbjct: 4   SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAH 63

Query: 79  VLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 138
           V+EFLRYLDQFGKTKVH  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE+GG
Sbjct: 64  VIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGG 123

Query: 139 LPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
            PE+NPFA+ A+R+YLREVR+ QAKARGIPY+KKK+K +  +Q  G +   +SS+
Sbjct: 124 TPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSA 178

[Close]

BLAST of Clc07G02810 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 112/175 (64.00%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 19  SSPQPSGGSHGSTP------------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQ 78
           S P PS  + G  P            SRYESQKRRDWNTF QYL+N RPP+ L+ C+   
Sbjct: 4   SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAH 63

Query: 79  VLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 138
           V+EFLRYLDQFGKTKVH  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE+GG
Sbjct: 64  VIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGG 123

Query: 139 LPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
            PE+NPFA+ A+R+YLREVR+ QAKARGIPY+KKK+K +  +Q  G +   +SS+
Sbjct: 124 TPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSA 178

[Close]

BLAST of Clc07G02810 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.1e-59
Identity = 111/174 (63.79%), Postives = 130/174 (74.71%), Query Frame = 0


Query: 14  GSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRY 73
           GSSSS+S    G     +PSRYE+QKRRDWNTF QYL+N RPP+ L+ C+   VLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 74  LDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPF 133
           LDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 134 ASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSSMMHFVP 188
           A+ A+R+YLREVRE QA+ARG+ Y+KKK+K     Q +GGD         H  P
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPP 194

[Close]

BLAST of Clc07G02810 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 228.8 bits (582), Expect = 5.1e-59
Identity = 111/174 (63.79%), Postives = 130/174 (74.71%), Query Frame = 0


Query: 14  GSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRY 73
           GSSSS+S    G     +PSRYE+QKRRDWNTF QYL+N RPP+ L+ C+   VLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 74  LDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPF 133
           LDQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 134 ASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSSMMHFVP 188
           A+ A+R+YLREVRE QA+ARG+ Y+KKK+K     Q +GGD         H  P
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPP 194

[Close]

BLAST of Clc07G02810 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.8e-89
Identity = 170/191 (89.01%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVPL 60
           MSIEGSISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVPL
Sbjct: 1   MSIEGSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPL 60

Query: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120
           SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG---DQD 180
           AYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK ++ +QTKGG   DQD
Sbjct: 121 AYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQD 180

Query: 181 STSSSMMHFVP 188
           S+S+SMMHFVP
Sbjct: 181 SSSTSMMHFVP 188

[Close]

BLAST of Clc07G02810 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.4e-89
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVPL 60
           MSIEGSISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVPL
Sbjct: 1   MSIEGSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPL 60

Query: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120
           SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITST-SQTKGG---DQ 180
           AYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK +ST +QTKGG   DQ
Sbjct: 121 AYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQ 180

Query: 181 DSTSSSMMHFVP 188
           DS+S+SMMHFVP
Sbjct: 181 DSSSTSMMHFVP 189

[Close]

BLAST of Clc07G02810 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 171/193 (88.60%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MSIEG-SISKDFSEGSSSSSSPQPSGGSHGS-TPSRYESQKRRDWNTFCQYLKNQRPPVP 60
           MSIEG SISKDFSEGSSSSS     G +HGS TPSRYESQKRRDWNTFCQYLKNQRPPVP
Sbjct: 1   MSIEGSSISKDFSEGSSSSSG---GGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP 60

Query: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 120
           LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 120

Query: 121 AAYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG----D 180
           AAYEENGG  ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+ SQTKG     D
Sbjct: 121 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK-TTISQTKGSGGHDD 180

Query: 181 QDSTSSSMMHFVP 188
           QDS+S+SMMHFVP
Sbjct: 181 QDSSSTSMMHFVP 189

[Close]

BLAST of Clc07G02810 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60
           MS EG+ +KDFSEGSSS+SSPQP     GS PSRYESQKRRDWNTFCQYLKNQRPPVPLS
Sbjct: 1   MSFEGA-TKDFSEGSSSTSSPQPG----GSIPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60

Query: 61  HCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120
           HC+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  HCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSS 180
           YEE+GG PETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG +    S+
Sbjct: 121 YEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAED---ST 179

Query: 181 SMMHFVP 188
           SMMHFVP
Sbjct: 181 SMMHFVP 179

[Close]

BLAST of Clc07G02810 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.4e-82
Identity = 158/187 (84.49%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60
           MS EG  SKDFSEGSSS+SSPQP     G  PSRYESQKRRDWNTFCQYLKNQRPPVPLS
Sbjct: 1   MSFEGG-SKDFSEGSSSTSSPQPG----GPIPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60

Query: 61  HCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120
           HC+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  HCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSS 180
           YEE+GG PETNPFASGAIRVYLR+VRECQAKARGIPY KKKKK T+T+Q+KG +    S+
Sbjct: 121 YEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAED---ST 178

Query: 181 SMMHFVP 188
           SMMHFVP
Sbjct: 181 SMMHFVP 178

[Close]

BLAST of Clc07G02810 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-75
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 22  QPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTK 81
           + SG     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL+FLRYLDQFGKTK
Sbjct: 13  ESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTK 72

Query: 82  VHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVY 141
           VH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFASGAIRVY
Sbjct: 73  VHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVY 132

Query: 142 LREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
           LREVRECQAKARGIPYKKKKKK   T +  GG +DS+SSS
Sbjct: 133 LREVRECQAKARGIPYKKKKKK-KPTPEMGGGREDSSSSS 171

[Close]

BLAST of Clc07G02810 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-75
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 22  QPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTK 81
           + SG     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL+FLRYLDQFGKTK
Sbjct: 13  ESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTK 72

Query: 82  VHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVY 141
           VH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFASGAIRVY
Sbjct: 73  VHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVY 132

Query: 142 LREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
           LREVRECQAKARGIPYKKKKKK   T +  GG +DS+SSS
Sbjct: 133 LREVRECQAKARGIPYKKKKKK-KPTPEMGGGREDSSSSS 171

[Close]

BLAST of Clc07G02810 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.6 bits (579), Expect = 8.1e-60
Identity = 115/187 (61.50%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSS-SSSPQPSGGSHGSTP-----SRYESQKRRDWNTFCQYLKNQR 60
           M+   +  K  +EGSS   S PQP      S P     SRYESQKRRDWNTFCQYL+NQ+
Sbjct: 1   MASHSNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQ 60

Query: 61  PPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALI 120
           PPV +S C  N +L+FL+YLDQFGKTKVHI GC+F+GQ EP   C CPL+QAWGSLDALI
Sbjct: 61  PPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGLPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGD 180
           GRLRAA+EENGGLPE NPFA G IRV+LREVR+ QAKARG+PYKK+KK+           
Sbjct: 121 GRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDG 180

Query: 181 QDSTSSS 182
           +D T+ +
Sbjct: 181 EDGTTGT 187

[Close]

BLAST of Clc07G02810 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-58
Identity = 108/149 (72.48%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 15  SSSSSSPQPSGGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYL 74
           ++SSSS   SGGS  +  SRYE+QKRRDWNTF QYL+N RPP+ LS C+   VLEFLRYL
Sbjct: 29  TTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYL 88

Query: 75  DQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFA 134
           DQFGKTKVH   C F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EENGG PETNPF 
Sbjct: 89  DQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFG 148

Query: 135 SGAIRVYLREVRECQAKARGIPYKKKKKK 164
           + A+R+YLREVR+ QAKARGI Y+KKK+K
Sbjct: 149 ARAVRLYLREVRDSQAKARGISYEKKKRK 177

[Close]

BLAST of Clc07G02810 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-58
Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 21  PQPS-GGSHGSTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGK 80
           P PS   S  +TPSRYESQKRRDWNTF QYLKN +PP+ LS C+   V+EFL+YLDQFGK
Sbjct: 17  PGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGK 76

Query: 81  TKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIR 140
           TKVH+  C ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEENGG P++NPFA+ A+R
Sbjct: 77  TKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVR 136

Query: 141 VYLREVRECQAKARGIPYKKKKKKITSTSQTKGGDQDSTSSS 182
           +YLREVRE QAKARGIPY+KKK+K   T  T   D  S+  S
Sbjct: 137 IYLREVRESQAKARGIPYEKKKRKRPPTVTTVRVDVASSRQS 178

The following BLAST results are available for this feature:

BLAST of Clc07G02810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887380.1	1.8e-90	91.62	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida]	[more]
XP_008455303.1	7.8e-89	89.01	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo]	[more]
KAA0031563.1	1.7e-88	89.58	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014...	[more]
XP_004136831.1	3.6e-86	88.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypoth...	[more]
XP_022930813.1	4.4e-84	85.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]

BLAST of Clc07G02810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.5e-74	84.38	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	1.8e-59	64.00	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.8e-59	64.00	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
A2XVI8	5.1e-59	63.79	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	5.1e-59	63.79	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]

BLAST of Clc07G02810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1B9	3.8e-89	89.01	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	8.4e-89	89.58	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K2D1	1.7e-86	88.60	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]
A0A6J1EWG4	2.1e-84	85.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	3.4e-82	84.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Clc07G02810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.8e-75	84.38	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.8e-75	84.38	Protein of unknown function (DUF640)	[more]
AT1G78815.1	8.1e-60	61.50	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.6e-58	72.48	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.4e-58	66.67	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 30..147 e-value: 2.2E-64 score: 215.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..161 score: 78.71801
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..187
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 5..185
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 5..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G02810.2	Clc07G02810.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus