Clc07G02050 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G02050
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSeed nucellus-specific protein
LocationClcChr07: 2048840 .. 2049476 (-)
RNA-Seq ExpressionClc07G02050
SyntenyClc07G02050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGACTACCAAAATTCCCTTTGCTAGCTATAAATTTGGAGGCCTCAAACCATTTTCACTACAAGAAGAAAAGAAGATAGAAAAACCAAAGCAAGAGAAGATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGAAACTAAAGCTAACCCATAAGCATAGTTATATATTGCTTATGTTTTCTATGAATAATAATAATAAGTAGGTCTTGCTTAATGGGATTTTGCTTTAACTAAATATGTAAGTAAGGCCAAGGTAATGGAATGAAAAATCTTCCTACTAAGGTATATGCTATTTGATAAAAAGACACTTTCTCCCTCC

mRNA sequence

AAAAAGACTACCAAAATTCCCTTTGCTAGCTATAAATTTGGAGGCCTCAAACCATTTTCACTACAAGAAGAAAAGAAGATAGAAAAACCAAAGCAAGAGAAGATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGAAACTAAAGCTAACCCATAAGCATAGTTATATATTGCTTATGTTTTCTATGAATAATAATAATAAGTAGGTCTTGCTTAATGGGATTTTGCTTTAACTAAATATGTAAGTAAGGCCAAGGTAATGGAATGAAAAATCTTCCTACTAAGGTATATGCTATTTGATAAAAAGACACTTTCTCCCTCC

Coding sequence (CDS)

ATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGA

Protein sequence

MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Homology
BLAST of Clc07G02050 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Sbjct: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

BLAST of Clc07G02050 vs. NCBI nr
Match: KAA0068070.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 9.5e-37
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLN---------EKYEGYKP 63
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L+         E YEGYKP
Sbjct: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKP 62

Query: 64  KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 117
           KEDYECDGYKYKDK+CYEYGNCDKSPYNE+  D QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 63  KEDYECDGYKYKDKDCYEYGNCDKSPYNEDV-DHQYNWGPYKKPITKPKEMGEKYGVHQS 122

BLAST of Clc07G02050 vs. NCBI nr
Match: KAE8650853.1 (hypothetical protein Csa_001704, partial [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-29
Identity = 76/122 (62.30%), Postives = 86/122 (70.49%), Query Frame = 0

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEK--------------- 63
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E                
Sbjct: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGYKP 62

Query: 64  ---YEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 108
              YEGYKPKEDYECDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 63  KEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122

BLAST of Clc07G02050 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_005092 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60
           M   GK LVA+L  S +AM  +ENVEG R+MGLKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNEDEYD 60

Query: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

BLAST of Clc07G02050 vs. NCBI nr
Match: TYK14008.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 9.9e-26
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           M ++GK LVA+L IS + M  +ENVEGGREMGLKEAT     HV NE  + YKPKE+  C
Sbjct: 1   MMMIGKNLVAVLAISTLVMMFMENVEGGREMGLKEATKAYNGHVSNENVD-YKPKEEDGC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKY 110
           DGYKYKDK+CYEYGNC KSPY  + DD QYN + + KP+PKPKEM  KY
Sbjct: 61  DGYKYKDKDCYEYGNCGKSPY-PDYDDGQYNWNSHMKPVPKPKEMDEKY 107

BLAST of Clc07G02050 vs. ExPASy TrEMBL
Match: O22351 (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.3e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Sbjct: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

BLAST of Clc07G02050 vs. ExPASy TrEMBL
Match: A0A5A7VLH5 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00080 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLN---------EKYEGYKP 63
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L+         E YEGYKP
Sbjct: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKP 62

Query: 64  KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 117
           KEDYECDGYKYKDK+CYEYGNCDKSPYNE+  D QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 63  KEDYECDGYKYKDKDCYEYGNCDKSPYNEDV-DHQYNWGPYKKPITKPKEMGEKYGVHQS 122

BLAST of Clc07G02050 vs. ExPASy TrEMBL
Match: A0A0A0L8T2 (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.2e-34
Identity = 81/131 (61.83%), Postives = 93/131 (70.99%), Query Frame = 0

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEK--------------- 63
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E                
Sbjct: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGYKP 62

Query: 64  ---YEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 117
              YEGYKPKEDYECDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 63  KEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122

BLAST of Clc07G02050 vs. ExPASy TrEMBL
Match: A0A0A0KAR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.9e-29
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60
           M   GK LVA+L  S +AM  +ENVEG R+MGLKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNEDEYD 60

Query: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

BLAST of Clc07G02050 vs. ExPASy TrEMBL
Match: A0A5D3CS37 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00050 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.8e-26
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           M ++GK LVA+L IS + M  +ENVEGGREMGLKEAT     HV NE  + YKPKE+  C
Sbjct: 1   MMMIGKNLVAVLAISTLVMMFMENVEGGREMGLKEATKAYNGHVSNENVD-YKPKEEDGC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKY 110
           DGYKYKDK+CYEYGNC KSPY  + DD QYN + + KP+PKPKEM  KY
Sbjct: 61  DGYKYKDKDCYEYGNCGKSPY-PDYDDGQYNWNSHMKPVPKPKEMDEKY 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AAB82329.11.5e-58100.00seed nucellus-specific protein [Citrullus lanatus][more]
KAA0068070.19.5e-3768.03Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucel... [more]
KAE8650853.11.9e-2962.30hypothetical protein Csa_001704, partial [Cucumis sativus][more]
KGN46573.11.6e-2862.71hypothetical protein Csa_005092 [Cucumis sativus][more]
TYK14008.19.9e-2663.30Seed nucellus-specific protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
O223517.3e-59100.00Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1[more]
A0A5A7VLH54.6e-3768.03Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0L8T26.2e-3461.83Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S... [more]
A0A0A0KAR77.9e-2962.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1[more]
A0A5D3CS374.8e-2663.30Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G02050.1Clc07G02050.1mRNA