Clc07G02010 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G02010
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF4-like
LocationClcChr07: 2030458 .. 2040548 (+)
RNA-Seq ExpressionClc07G02010
SyntenyClc07G02010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACAATTCCAGATCAGTAATTGACCAAGGTCTGTTCATTTGTGCACATTCAATAAACATAAGAGATCCAGCAAAATCATGAACAACTCAACAAACTCCCCCCACGCCACTTTGATCACACCCAAGATGCGTTCCTAGTTCACTAGTAGGGCCTTCTGTTGCTTACTTCATAATCCCAAAACAAATCTGGCTCAACTTTGGCTTTTGGTAGCTATGGAGGATGACATTCTTATGGTTTCCACAGTGCCCACATAATTAAAACAGCAACCATCTCAATATCTTTGTTCTCTAGAATGGTCAACAGACCCTCACTAACCCTAAAGTCAGCAAGAAAGATGGGTAAGGAAGGAACTTTCCTAGTGAACTTACACTTCTACATTAGATGTGTGGTGGAACTAATTCACTTTGACCCTCGATGCCACACTACTTCCCTCCTCCATCGCAACAAGCTGGTAAACACTTTTTGCCCAAAAGAAACCTTTGGGGTCTAGCCCCCAAATAATTTCGTCTCTAGCTCTCCCATAATAAGGGAAAATTCAACCAAATGACCTAAAAAAACAAAAAAATTTCTATGAGTGACCTCTTGTTTGTTATTGACCATTTTGACGTATGAAATACCACTTTTGCCTTAAATGGTTTCTCCTTGTATATTTCCTCCATCTCTTTTGCTTTTCCCTTCCAACTACAAATGGAAATTCAAATTCATTTAAAACTAAAGATACTTTAACATTTTGCTTACTTTATAAGCATAGGGGGAAATAACGCGAAAAATCGTACGAAAACGATCACACTTTTTCTGCGTGATTGATAATTTTGATTTTGTCATATCTTCGTTGATACAACTCCGATTTAACTAAATGACCACTCGTTTTCGTACGATTGTTTGCATTCTTTCCAACCATGCTTATAAAGTAAGCAAAATATTAAAGTATCTTTAGTTTTAAATGACTTTGAATTTTCGTTTGTCGTTGGGAGGAAAAAGCAAAAGAGATGGAGGAAATACATGATGAGAAAGCATTTAATATTGAGGGTAAAAGAAATATTTCATATGTCAAAATGATCAATAATAAACAAGTTTTTAGAAACAGGTCACTCATAGAAATGTTTTTGTTTTTTGGGTCATTTTGTTCAATTTTTCCCATAATAAAGGTGAATAGGGTTTATTAAAACTAATTTAAACTTTTTACTAATGTGGGCAAATTAATAAACTATTTGCAAATGAGTAGTTTAAACAATATTTTTATGCAAACAAATTCACTCTGAATTAAACGAGAAATTAACAATTATACTTTAAAGCACCCTGTTTAATTCTAATAAAAAGATTGGTAATGAATATAGAAATTTAAGAACAACCAATCAAAATAAATCAATATGAGCAATTAATTTCAAGAATTAAAAATTGCAATTAATTTCATGAAATAAAATATAGTAACAAAATTAATTGCAAAAATAAATTAGGAGAGGGATAGAGATAATGACACCGTGAATTTTATAGTGGTTTTACACAACCGGCCTACATCCACTTTCCAAACTCCTCTTGGGTATTTCTTTGACTCTTCCCACGACTTAGAGTCGAACCGCTATAACATTCTTTTTTCGGGCACAAGAACAAACCCGATTCTTTCCACGGTTAAGGATCAAACGGTTACAACAACTTCTTTTTCGAGATCAAGAGCCAACTCATACAAAAGTTTGGAAAAACAAAGAGCACACTTGGCTTGGTGAATTATGGAGGATTGAAAATAATAAAAGTTGTAAAATTTTGGAGAAGATGAAGGGTTTAAAAAGAAATGAAAGTCGGTGAAAATCACATTAATTTGAGCCGTTAGTTCTTTGTAAAAGAAAATTGAATGGTGGATATTTAAACTCAACTAGCCGTTAGACACAAACATATATAATATTAAATTCATTCTTTTTAAAATTAACTACTAGCCGTTAGACACAAACATATATAATAATATTAAATTCATCTTCTTTTTAAAATCATTTTCTTTTTAACATCGATCCAAAAATAAAAAACCCACAAAGTGTAACTTTTCTATTGTTCCAAGTGGTACCTTTGAAGCTTGAAATTATTTTGTGAAGCTTGGTTCGACCATATATTCTTCGTTCGAACTTCGATTTGAGTGATTTAAATTGCGTTGGAACCATTGTTCCAAGCTCCACACAATAGACACTCCAAAACACTCAAATTATTAATAAATAAAGCAAGTTTGTTATCATTAAAACATTAATTAATTTGAGATTAAGGGCCAAAAAAGCCAACAATCTCGCCGATATTCTATCAACATTCCTATCCCCATTCTCTAATATCTCTTTGACTCTCTTGTCCTTAAGATCCACCACAACCCTTTGCGAAATTCTAGAACCTTTTGACTTCAACCATGGATCTTGGTCAATATCACAGTGGAAAATTTTCATCGAAATCTTGAAATTGATATTTCAATGGCCTCGAAATTTTGGGAGGGGAAATTTCATTTTCCCCCCGTTTTGATGAAATTTCGAGAATATTGGGATGAGATTTTTTTTAATTATTTTTTTAGGAATTAGCAACATTAGCTCTGTTTAAGTTTTTACAGGGTCCTTATTACACACAGTGGTATAGTTTCACATGCCAATGCCATTTCTAACGAAAATGAAGCTTTGTCAACGTGCTACTTTTTTTTTTTAATTTTTTAATTTTTTTTAATTTCCAACGTTTCTAAATATTTAGCTTTATTTTCAATCCAAAACTTTTGTTCCCAAAGAAATTGAATTAAAAAAAAACCACAAAAAAGAACCCATATTTATTTTCAACCTCATTCAAACTTTTTCCATTAAATTTTCATATCATTTCACCTCAAAATTGAATTGATGTGAGTTTTGTTACTTTTACCATCCAAAAGTTTCATTTTCGCTTTATTTCACCTCAAAATATTTCTTAACTTTTATATTATTTTGTAATTACTTTTTCATTTCTTTTTTAAAATTTTTGCTATCGCATTGACATCTAAATATTATCTTACTTTATAGAAATGATTATTAAAAATGGTTAACTATAGTCTAATTAAGTCACAATCAAAGTTTCATTAACTAATCATGAAAATTTCCATCAATTTTCATAAAAGTTTCCCAAAATTTCCATTGACATCGAAATTTCCATAAAATAAGGACTTCAATATCTCCACCGATATCAATATTTTGAACCTCGGTCTATAAATGCTGGCCTCATTACCAGCTTTCCATTTATAACTTTTTTGAAATAGATCCCTACCCCACAGGAGAGGGATTGCAACCAAGAGATGAAAATCACCATTGTTGAAGTATCGACCTTTGAAGATTTTAGCAAGCAGGCTGTCAGGATATCATATAATCCTTCAACATGGTTTTGGCTATCATGGCTTGTTTGAACAACCTCAATTCTCTAAAACTCATCCCTCCCAACATCTTTTTCCATCTCAACTATTGAACTTTTTGCCTATACCCCGAGCACTATATCCTGTTGATATTGTTGATATCAGAAGCTTAAAGTAGCTCATCGTATAAATTAGGATGGCTTGGGCTATGGACTCAATAAGTACTTCTTTAACTCCTATGGAGAAAAACTTCTCTTTCCACCCTTGAAGTGATTTTCACGCCCTATCCCCGATTCTTTTGAACAACAACTCTTCCTAGGGCACTCCATTGAGAAGCTTGATGTGAATGTGCTCGACCCCATCCACCACATTATCAATATAAGCAATCTAAGGAGAAACGTAGATTGGGAAGGAAAAATGATTGACCCCAACACTTTTTTGAGCTAGTTTGCAAGAGATTTTGCAACGATCTTGTAAATCACAAAAATAATGAAAATTTAATACCACGATCAAATTGATACTACAATTACAATCTTTGGGGATAATTGGAGTAAAGAGTAAGGAATTATGAAGGTTAGGGAGTTGTAAACTCTTGAAGCCCACAATATAAAAAATTGATAAGATATAAAATTAATATTTTTTAGTGGAGCTAAACCCACCTAAAAAAGAAAAAAGTGAAATATGAGTTGTAACAGATTTCACAACAATGGCTACCATTCTAACCCCATTCCAACCTCCAAACCCCTCTAAAGTTTCGACATTGAGGGTGGAGGGTAAAACTGGGGCGGTGACGTACGCACGTGCGACAGGAAGAATGGAAAAACCAAACAAACACGTGTCACGCAAGTATTGGGTATGAGAAGAAGACGTGGCGCATTTCAGGCTCGGCTCCTCTTTCACTGTCCCGCAAGAACCCTGGAACTTCCCTGTGCCGTGTCTCCATTTTCGTCCTCAATCCCAACCCTTTTCTTCATTTCTCTCTTTATATTGTCCATTTACCCTTCTTTTTCCCTTCCACCTCTCAACCCTTAGAACCCCAACTACAGATATCACAAACCCTAGAACTAATTATCTCATCTCATCTCATCTCATTTAATCTAATCTATTTACCACCTCAAATATCAAGATATTTTTCAACCGTTCATTTCAGGTACACCATCTTGAGATTCGACGAATTTTGTAATTCTTTAAATTGGGTATTTTATCTTGTTAATCTTAGTTATGATCTCTGGGGTTTATTTTTTTTAAAAAATTGCTTTTGTGAATGCTTTCACCGATGTGAGATTGAAGACTTGATGTTTTGGTTCGTGATCGAGTTGGTTTGTGTAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTATGAATTTTGTGGTTTATTATAAGTCTGATGATTAGCCCGAAGATTTGATGTATTTGAATCGTGTGGCGTAACTGATTATGAATGAATGTTTAGGGGGAAAAGGTAGTGGTTGATTTTAAGGAGTGTGTTGTTTTGTGAATAATGTGGGTTTGTCTTTTTAATTATAAATCTGGGAACAAAGTGTTTGTTCATTAAGGAGGATTTTATTGTTGTCGTGGTTTCTGAGTTACAGGGATTTGTTTCTGGTGTTTTTTGCTCCCTGTGAATCTCCTTGTGTTTATTGCATGAGTAGACTTCACGCTTATGGGGTGGTTGCTGAGAATAAGTGTGATGAATAAAGTTATAAAGTTTTCAATTCGTGTGCCATTTCAGTGAATGGTAACTGAAGTTTTTTGTCAGTGTTTTCTTATCCAAGCTTCTCAGACTGTATTTGAATGGTGGTAATTGTGGTTTTGTCTTTGTTGGAAGCCATCAATTTCTTTCTCAAATTTTCCTTTGTTCACTTTATCTTACATGATAAATAAGTTGGGCTCTTATTTGCATTCAGATTTTGAATATATTGAGTGCATGTATTGCAGGTTGCTGAGGAGCTCCAAAATATTGATGAGTACTCAGGCCATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGTATGTTTCCTGTGGCTTCCCTTGAATGCTTAATACTTGCGATTATTCTATCCATATTATATTCTTGTTCTATTGATTCTGATCTGTATTCCGTGAATTCCATTGATTTTCTGTCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGGTATGTATATTTCAGCTGGTGGAGGACTTTAGCTAAGTAGATTTTTTTGCATTACTTCCCTCTTTGTTAATTGGGAAGACAATTGTAGCCTATTGGTCTATCTATTTTAATGTCTTTATCCCTTGCAATGCAATTTTATTTATTTTATTCTCTATTTAGTTGTTTTTTAATAAATTCTAAAGGTCTACTGTTTGCTGCTTGTTCATTATGGAAGGAAGCTCGGAAATTTGCTATATTAAAATATTGAACATTGGTATTAATTAGGAAAGTAATTCGTTGCGATTGATGGTCGCCGTTGTTCATGTGATTAGGAACCTTTAGATTTGGTGATTCATGTTTTCGAACATAACCACATTACAATGATCTTAATTTTAGGATGTTTGAGAAGTTAGACATCTTGAAGCATTAAATACTTTGAAATTGTGAAGACACAGAAGGTGTATTTGTTATTCCATCATTTCTTCTAAATCTTAGCATCCATTAGTAGTTAGAACCATTCCGGCACTGATTTTTGGAATACCTTGTACCCTGTTAGAGCATGGTAAGAGAAATGAATAGAAGAGAGATTTACATTCGATCCATCCTTCCTTAATGCCATAGGAAGGATCAGACCACAGTACAAACAATGATACCCCCCAAAGAAGTACGAAAGTCAAGTGTGGCTCAACCAAAATTCTCCTATTTGAAAGATTTTGTTTCCTCTGGAGGATGACAAAATTTGTGCTGAAACATATAATTTGTCAGTGGACTATTAGGAAATTGTTTTTTTTTTCCTCTCTCGCTCTATGTTCGTTTTTGGGAAAAAAAGATATTTATTGTTTATATTTATGGTTGTACCTAAGGATTGAAATACTCGTCAATATGTTGATATATCTGTAAATTGAAGATATTTATTGTTTATATTTATGGTTGGACCTAAGGATTGAAATATTCGTCGATATGTTGATATATCTGTAAATCGAAGATATTTATTGATTATATTTATGTTTGGACCTAAGGATTGGAATATTCGTCGATATGTTGATATATCTGTAAATCGAAGGGTTCAACGTCAAATTAAGGGTTAAATAGATCTCTCCAATATCTTTTTATAAGTACATATAAAGATAACAAATTAGTTTGGAGGTAAAATAACTATTATTAATTTATAAATTTCTTTATCTATAGAAATATTTCTCAATATCAAATATTTTATCGAAATATCCGTAAAATTGAAATTTCGATATTGATATTGACATCGATATTTTAATCCCTTGATTGTACCGTCTATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGGTACTGGGACAACTTATACCTTTGTTACTCTTCTTTTTGTGCAAGATTTTTCCTGTGTCGTTAGGTGTAGTGTAGATCATATAATTGTCCCTTGTGATTGCAGTTTTTAGCACAAAAACAAATTTTGGCATGTTCTCCCTTAACCTATGTTTGTATTTTCTCGACTAGTTCTCATGGCTATTTCTTGCATATACAATACATCTGGTCGCTTTCATTTCTCCCCTTTGGAAAAGTTAAGTTAGTTTGTTTTATGGTTTTTTAACAATAAGTCACTTACCTCTCACTTTTTCTCTCTCTATGTTTGAGTGCTGCTTTTCTTTTGGTTGATTTATCTTCAAAGTTAGGGTTGTTCACAGGTTGAATTGATTTGGTTTATCTCGTAATGGGGAACTAAACCATATGTTTTGGTTTGATTCATTTGATTATATTTGAAAAAGATAAGGATGGATCATGGATGGTTTGTGCTAAATAATCAGAAACTAAACTAAAAGATGCCTTGATTAGTCTAGTTTTCACTAGGTTTAACTTTTTTCTTGTGACTACCAGTGTTCATCGGTCAGTGTTGGCCTCGCTGACCAGTGACCAATCAGTTTTTCTCAGTTGTTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGACACAAATGAGAGAGGAAGAATAGAGAAAGAATTAATTTTTTCTTGTGACTAGCGGTGTTCATCGGTCAGTCGGTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGCCACAAATGAGAGAGGAAGAATAGAGAGAGAATTAATTTTTTTTTAAACCAGCAACTGGTTTCCGCCTTTTCTTTTCTTCTAATTTTTTTTTAACGTTGGGTTGGGCGGTCGTATTTTCTATAAGAAAAAACTGACTTTGACCAATCAATCCTTGGTTGGATTTGTTTTCAGTCCAATTTTATTCCCCCCTGCTTGTGACTAAACTCTTCAATTTCTAATTGTAGCATCTTATTAGCTGTTAGTGTTGGAAATGTGATTTTGTGTTGAAAATGGGATTATGTCTCAAGTGCTTAATATCGAGCCAACATGTGATTTCTGTGCTATTGGCAGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGAGGCTTGGCTTACATGTAAGTTGCTTAATTGCTTGGTCAATTTCTTGTTCTTATGGTACAAAAAAGTTGCATATGCCCCATTTTTAATATGCTTTTTGGCTATTGGCCTAGGTCTGAGATGTCTTTCATTAATAACTCTGTCCCAGTGGTTATGGGTGAGATCTTTCTTTTTTGTATTATAGTTTAGGGTATAGGATGGTTATTCAATTGTAATTTGCGGCTGGAGCAGTTATGATTGTCGTAAGGGTATTGGTGTAATTGCATGTGTTTGATTAAAGGGACATTTGAAATAGTTGTATTTATGAAAAGTTTGATTATAGGGAGTAATTCAGAAAATTGGTTTTGTATATGAGGGAGGTGGCATGAAATAACTTTATACCTCAGTTTTATTCTTGTATTTCATTTAGGCTAAATTTAAAAAAATACTCTGAAGTGTGAGCTTAACCAAAATGCCCCATAATTTCTAAAGTTGTAACATTATTCTTAAACCTTCATTAATATTTCAAAACTTGTCTTTGGAGTAGAAATTCTATAGAATGTCGGATAGAAATCAAGACTTGAATGGTGTGACAATCACGTAAAATGGTGTGGTGATTCAAACTTTTGTTCTAAGTCACTGCCACAACATTTCAGCTCCCAATTTTCATCCAGGATTTCAATGTTTTTGAAAGTACAAGGGTAATATTGTAACTTTTGGAAGTGTTGGGGTATTTTAAAAAAGAAGATAAAGTTCAAGAGGATCTTTTATAATTTGATGTTTCATTACCCTTTCCTTACGTTTTCATTGCTTAGTTTCAATAAAATAAAATAAAAAATAAAAAATAAAATAAAAAAACCAGAAGAAAGGAAGGAGGGGAAAAAAAAAAAAGAAGAGCAGCCTTTATGGCAATAAAAGATCATTCCCTTAAATATTTCATATCATATGGGTCTTTTGTCTTAATATCATGGAGCCTGTAAATTACTACATTCTATTTCTTCCTACACAGTTTCTCATCAGGGAATGGTAGGAGTATGAATGCACCACATCCTTAGAGGACTATATGATGGATGGAAATTTTAGATTTTGGTTGATTCAAAACTGTGGGAAATTGGAACCATATCTGTGTGAACACATTGAGATCCTTGTCATTTTGTGCCAAGTGCAATCATCTTAACTTTATTTTCTAAATTTGTCTTTTAATATGATTACAGCTCACAGGATTTTGTTTTTGAAGACTTCGAAAGGAAATGGCTGAAGTTTTCTTGTAAGTAAGAAAAGCTAATTTTTAGGTGGAAATTTCCAATGTATTCTGCTGATTGCTGCTGCATCTTGATGATCTCAGAGTTGCATTAGGAGGAGGTAGCAGGAAATTCTAATTTCCATTTTTTTTGTTGTCAACTTTGGTGGTTTTATTGGAGTTGTAAAAGAACTGATTATGAAATCCAACAGTAATGCAAATGAGATTACATAATTATTAATCTAGGAAGTTGCTTTTGTTGGTTGACTTCTG

mRNA sequence

ATGGTTGACAATTCCAGATCAGTAATTGACCAAGGCTCGGCTCCTCTTTCACTGTCCCGCAAGAACCCTGGAACTTCCCTGTGCCGTGTCTCCATTTTCGTCCTCAATCCCAACCCTTTTCTTCATTTCTCTCTTTATATTGTCCATTTACCCTTCTTTTTCCCTTCCACCTCTCAACCCTTAGAACCCCAACTACAGATATCACAAACCCTAGAACTAATTATCTCATCTCATCTCATCTCATTTAATCTAATCTATTTACCACCTCAAATATCAAGATATTTTTCAACCGTTCATTTCAGACTTGATGTTTTGGTTCGTGATCGAGTTGGTTTGTGTAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTTGCTGAGGAGCTCCAAAATATTGATGAGTACTCAGGCCATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGAGGCTTGGCTTACATCTCACAGGATTTTGTTTTTGAAGACTTCGAAAGGAAATGGCTGAAGTTTTCTTGTAAGTAAGAAAAGCTAATTTTTAGGTGGAAATTTCCAATGTATTCTGCTGATTGCTGCTGCATCTTGATGATCTCAGAGTTGCATTAGGAGGAGGTAGCAGGAAATTCTAATTTCCATTTTTTTTGTTGTCAACTTTGGTGGTTTTATTGGAGTTGTAAAAGAACTGATTATGAAATCCAACAGTAATGCAAATGAGATTACATAATTATTAATCTAGGAAGTTGCTTTTGTTGGTTGACTTCTG

Coding sequence (CDS)

ATGGTTGACAATTCCAGATCAGTAATTGACCAAGGCTCGGCTCCTCTTTCACTGTCCCGCAAGAACCCTGGAACTTCCCTGTGCCGTGTCTCCATTTTCGTCCTCAATCCCAACCCTTTTCTTCATTTCTCTCTTTATATTGTCCATTTACCCTTCTTTTTCCCTTCCACCTCTCAACCCTTAGAACCCCAACTACAGATATCACAAACCCTAGAACTAATTATCTCATCTCATCTCATCTCATTTAATCTAATCTATTTACCACCTCAAATATCAAGATATTTTTCAACCGTTCATTTCAGACTTGATGTTTTGGTTCGTGATCGAGTTGGTTTGTGTAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTTGCTGAGGAGCTCCAAAATATTGATGAGTACTCAGGCCATGAGGGGACATACCGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACTTAAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAGACATCTCAATTGGGGTTTCAGGAAGCACCAGTTAATCCACAACAGTCCGTACAACCTGCAATGATTGACATTGAGGCCCTTGATGATGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAATATAGTTGATGTGGATGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

Protein sequence

MVDNSRSVIDQGSAPLSLSRKNPGTSLCRVSIFVLNPNPFLHFSLYIVHLPFFFPSTSQPLEPQLQISQTLELIISSHLISFNLIYLPPQISRYFSTVHFRLDVLVRDRVGLCSWGKRSDGVGIVWRWIFMIGLLRSSKILMSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE
Homology
[Close]
BLAST of Clc07G02010 vs. NCBI nr
Match: XP_038888129.1 (E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888130.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888131.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888132.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888133.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888134.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888135.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida])

HSP 1 Score: 379.0 bits (972), Expect = 4.3e-101
Identity = 195/206 (94.66%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQL FQEA VN QQ VQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQHVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEE  KVSNNNRSKRRRDVSN QPV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEEWTKVSNNNRSKRRRDVSNQQPV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGPLVEETSTRCGHIFCKACIRAAIAVQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           +KCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 NKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. NCBI nr
Match: XP_004144388.1 (E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_031738436.1 E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >KAE8650852.1 hypothetical protein Csa_000772 [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 3.4e-98
Identity = 189/206 (91.75%), Postives = 195/206 (94.66%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGHT RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMID
Sbjct: 1   MSTQAMRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKN+VDVDAEER +VSNNNRSKRRRDVSN   V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGPLVEETSTRCGHIFCKACIRAAI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. NCBI nr
Match: XP_022967334.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967336.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967337.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967338.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967339.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 1.7e-97
Identity = 188/206 (91.26%), Postives = 194/206 (94.17%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MST+AMRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ GFQEA VN QQSVQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEER + SNNNRSKRRRDV N Q V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMK K APPKEP F+CPICMGPLVEETSTRCGHIFCKACI+ AIAVQ
Sbjct: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. NCBI nr
Match: XP_008460369.1 (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460370.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460371.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460372.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_016902544.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 2.9e-97
Identity = 187/206 (90.78%), Postives = 194/206 (94.17%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKN+VDVDAEER +VSNNNRSKRRRDVSN   V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGPLVEETST+CGHIFCKACIRAAI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. NCBI nr
Match: XP_022963653.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963654.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963655.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963656.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963657.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 8.4e-97
Identity = 187/206 (90.78%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ GF EA VN QQSVQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEER + SNNNRSKRRRDV N Q V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLE SNSSMK K APPKEP F+CPICMGPLVEETSTRCGHIFCKACI+ AIAVQ
Sbjct: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match: Q9CQ29 (RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-08
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 281 APPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRV 340
           A P + KF C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match: P78317 (E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.1e-06
Identity = 51/214 (23.83%), Postives = 93/214 (43.46%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MST+  RG        +K              R+   T ++  +  P+   ++    ++D
Sbjct: 1   MSTRKRRGGAINSRQAQK------------RTREATSTPEISLEAEPIELVETAGDEIVD 60

Query: 202 I--EALDD---DVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRD-- 261
           +  E+L+    D+  + +    + + + RRNAR+   D  A+  +  S++    R RD  
Sbjct: 61  LTCESLEPVVVDLTHNDSVVIVDERRRPRRNARRLPQD-HADSCVVSSDDEELSRDRDVY 120

Query: 262 VSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVE-------ETSTRCGH 321
           V+ H P N+           +  ++P+       +CPICM    E         ST CGH
Sbjct: 121 VTTHTPRNA-------RDEGATGLRPS----GTVSCPICMDGYSEIVQNGRLIVSTECGH 180

Query: 322 IFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFL 342
           +FC  C+R ++   + CPTCRK++  K    +++
Sbjct: 181 VFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

[Close]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match: Q9QZS2 (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-05
Identity = 45/182 (24.73%), Postives = 82/182 (45.05%), Query Frame = 0 

Query: 174 RDQGETSQLGFQEAPVNPQQSVQPAMIDI--EALDD---DVIESSARAFAEAKNKSRRNA 233
           R+   T ++  +  P+   ++V   ++D+  E+L+    D+  + +    E + + RRN 
Sbjct: 25  RETTSTPEVSLETEPIELVETVGDEIVDLTCESLEPVVVDLTHNDSVVIVEERRRPRRNG 84

Query: 234 RKNIVDVDAEERIKVSNNNRSKRRRD--VSNHQPVNSDLLINLEASNSSMKVKPAPPKEP 293
           R+   D  A+  +  S++    R +D  V+ H P          ++       P P    
Sbjct: 85  RRLRQD-HADSCVVSSDDEELSRDKDVYVTTHTP---------RSTKDDGATGPRP--SG 144

Query: 294 KFNCPICMGPLVE-------ETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRV 342
             +CPICM    E         ST CGH+FC  C+R ++   + CPTCRK++  K    +
Sbjct: 145 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 194

[Close]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match: B5DF45 (TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 24/45 (53.33%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 282 PPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIA-VQSKCP 326
           PP E K+ CPIC+  L E   T CGH FCKACI  +I     KCP
Sbjct: 62  PPLESKYECPICLMALREAVQTPCGHRFCKACITKSIRDAGHKCP 106

[Close]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match: Q3MV19 (TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0 

Query: 282 PPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIA-VQSKCPTCRKRVTAKEL 337
           PP E K+ CPIC+  L E   T CGH FCKACI  ++     KCP   + +  K+L
Sbjct: 64  PPLESKYECPICLMALREAVQTPCGHRFCKACILKSLRNAGHKCPVDNEILMEKQL 119

[Close]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match: A0A6J1HQI7 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC111466888 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 8.2e-98
Identity = 188/206 (91.26%), Postives = 194/206 (94.17%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MST+AMRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ GFQEA VN QQSVQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEER + SNNNRSKRRRDV N Q V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMK K APPKEP F+CPICMGPLVEETSTRCGHIFCKACI+ AIAVQ
Sbjct: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match: A0A1S3CCB4 (E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.4e-97
Identity = 187/206 (90.78%), Postives = 194/206 (94.17%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKN+VDVDAEER +VSNNNRSKRRRDVSN   V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGPLVEETST+CGHIFCKACIRAAI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match: A0A6J1HFU4 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463920 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 4.1e-97
Identity = 187/206 (90.78%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ GF EA VN QQSVQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEER + SNNNRSKRRRDV N Q V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLE SNSSMK K APPKEP F+CPICMGPLVEETSTRCGHIFCKACI+ AIAVQ
Sbjct: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match: A0A1S3CBW2 (E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.0e-95
Identity = 186/206 (90.29%), Postives = 193/206 (93.69%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQL  Q+A VN QQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKN+VDVDA ER +VSNNNRSKRRRDVSN   V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA-ERSRVSNNNRSKRRRDVSNRPSV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGPLVEETST+CGHIFCKACIRAAI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 205

[Close]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match: A0A6J1E010 (E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024653 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 3.6e-93
Identity = 181/206 (87.86%), Postives = 192/206 (93.20%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           MSTQAMRG TARGYHRRKS+DLDLNSMPP+ENRDQGE SQLG QEA  N QQ +QP MID
Sbjct: 1   MSTQAMRGTTARGYHRRKSLDLDLNSMPPSENRDQGEPSQLGLQEAHSNQQQPLQPTMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPV 261
           IEA+DDDVIESSARAFAEAKNKSRRNARKNIVDVDAEER +VSNN RSKRRR+VSN + V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRVSNNIRSKRRREVSNQRTV 120

Query: 262 NSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQ 321
           NS+LLINLEASNSS+K KP PPKEPKF+CPICMGPLVEETSTRCGHIFCKACI+AAIAVQ
Sbjct: 121 NSNLLINLEASNSSLKEKPVPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIKAAIAVQ 180

Query: 322 SKCPTCRKRVTAKELIRVFLPGTSLE 348
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Clc07G02010 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-41
Identity = 104/212 (49.06%), Postives = 138/212 (65.09%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +     P+ P Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERIKVSNNNRSKRRRDVSN-- 261
           ++A++DDVIESSA AFAEAK+KS RNAR+   +VDV++    +   N  +KRRR  S+  
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 262 -----HQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKA 321
                H  VN +  +N+ +  S  K    PP+EPKF CPICM P  EE ST+CGHIFCK 
Sbjct: 121 VIDCEHASVNDE--VNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKG 180

Query: 322 CIRAAIAVQSKCPTCRKRVTAKELIRVFLPGT 345
           CI+ AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 CIKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]
BLAST of Clc07G02010 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-41
Identity = 104/212 (49.06%), Postives = 138/212 (65.09%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +     P+ P Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERIKVSNNNRSKRRRDVSN-- 261
           ++A++DDVIESSA AFAEAK+KS RNAR+   +VDV++    +   N  +KRRR  S+  
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 262 -----HQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKA 321
                H  VN +  +N+ +  S  K    PP+EPKF CPICM P  EE ST+CGHIFCK 
Sbjct: 121 VIDCEHASVNDE--VNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKG 180

Query: 322 CIRAAIAVQSKCPTCRKRVTAKELIRVFLPGT 345
           CI+ AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 CIKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]
BLAST of Clc07G02010 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-41
Identity = 104/212 (49.06%), Postives = 138/212 (65.09%), Query Frame = 0 

Query: 142 MSTQAMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLGFQEAPVNPQQSVQPAMID 201
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +     P+ P Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 202 IEALDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERIKVSNNNRSKRRRDVSN-- 261
           ++A++DDVIESSA AFAEAK+KS RNAR+   +VDV++    +   N  +KRRR  S+  
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 262 -----HQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKA 321
                H  VN +  +N+ +  S  K    PP+EPKF CPICM P  EE ST+CGHIFCK 
Sbjct: 121 VIDCEHASVNDE--VNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKG 180

Query: 322 CIRAAIAVQSKCPTCRKRVTAKELIRVFLPGT 345
           CI+ AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 CIKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]
BLAST of Clc07G02010 vs. TAIR 10
Match: AT3G07200.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 7.0e-33
Identity = 87/176 (49.43%), Postives = 115/176 (65.34%), Query Frame = 0 

Query: 171 TENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEAL--DDDVIESSARAFAEAKNKSRRNA 230
           T+N  QG+  Q    +AP  PQ    P  I++ A+  DDDV+ES+A AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 231 RKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKF 290
           R+    VD E     +  NRS RRR  S+   V+S   + L     S  V P P +EPKF
Sbjct: 79  RRGSQVVDVES----AGANRSTRRR--SDQTSVDS---VELNKPRKSKAVAP-PVEEPKF 138

Query: 291 NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGT 345
           +CPIC+ P  +E ST+CGHIFCK CI+ A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 139 SCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

[Close]
BLAST of Clc07G02010 vs. TAIR 10
Match: AT3G07200.2 (RING/U-box superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 7.0e-33
Identity = 87/176 (49.43%), Postives = 115/176 (65.34%), Query Frame = 0 

Query: 171 TENRDQGETSQLGFQEAPVNPQQSVQPAMIDIEAL--DDDVIESSARAFAEAKNKSRRNA 230
           T+N  QG+  Q    +AP  PQ    P  I++ A+  DDDV+ES+A AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 231 RKNIVDVDAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKF 290
           R+    VD E     +  NRS RRR  S+   V+S   + L     S  V P P +EPKF
Sbjct: 79  RRGSQVVDVES----AGANRSTRRR--SDQTSVDS---VELNKPRKSKAVAP-PVEEPKF 138

Query: 291 NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGT 345
           +CPIC+ P  +E ST+CGHIFCK CI+ A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 139 SCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

The following BLAST results are available for this feature:
BLAST of Clc07G02010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888129.14.3e-10194.66E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888130.1 E3 ubi... [more]
XP_004144388.13.4e-9891.75E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_031738436.1 E3 ubiquitin-... [more]
XP_022967334.11.7e-9791.26E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiq... [more]
XP_008460369.12.9e-9790.78PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_0... [more]
XP_022963653.18.4e-9790.78E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963654.1 E3 ub... [more]
BLAST of Clc07G02010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CQ297.6e-0845.76RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1[more]
P783177.1e-0623.83E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1[more]
Q9QZS21.2e-0524.73E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1[more]
B5DF452.7e-0553.33TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=... [more]
Q3MV192.7e-0544.64TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=... [more]
BLAST of Clc07G02010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HQI78.2e-9891.26E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC11146688... [more]
A0A1S3CCB41.4e-9790.78E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1HFU44.1e-9790.78E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463... [more]
A0A1S3CBW21.0e-9590.29E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1E0103.6e-9387.86E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Clc07G02010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G48655.21.8e-4149.06RING/U-box superfamily protein [more]
AT5G48655.11.8e-4149.06RING/U-box superfamily protein [more]
AT5G48655.31.8e-4149.06RING/U-box superfamily protein [more]
AT3G07200.17.0e-3349.43RING/U-box superfamily protein [more]
AT3G07200.27.0e-3349.43RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 290..327
e-value: 6.0E-5
score: 32.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 290..328
score: 12.489278
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 289..327
e-value: 2.1E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..263
NoneNo IPR availablePANTHERPTHR47094ELFLESS, ISOFORM Bcoord: 142..344
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 286..334
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 267..342
e-value: 4.2E-17
score: 64.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 305..314

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G02010.2Clc07G02010.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding