Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTTTTATTTCTGGTAGAAACAAAAATCTCCTAATGGAAAAGGAAAATTAAAACTTCCTAATTGGAAGGCTCTCCGTCTGGTTGGATTATAAATAAATAAAAAACCCTAAGTTGGTAATTTAATTGGTAATAACAACAATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAACAAATAAAAAAAGAAAAGATTTAGTAAAATAAAAAAACACAAGTGTACAATATGCTGACATACGAGTGAATTTATAACCATGGAAAAATATACGATATGTTGTTTACGTTAAAAAAATGTGAAATGATTGATTTAAAATAAAATTATAAAAACAAAAATATGTTTTATATAATGCAATTATGCTAAGTATCCGATCACTTTTGAG
mRNA sequence
TGCCTTTTATTTCTGGTAGAAACAAAAATCTCCTAATGGAAAAGGAAAATTAAAACTTCCTAATTGGAAGGCTCTCCGTCTGGTTGGATTATAAATAAATAAAAAACCCTAAGTTGGTAATTTAATTGGTAATAACAACAATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAACAAATAAAAAAAGAAAAGATTTAGTAAAATAAAAAAACACAAGTGTACAATATGCTGACATACGAGTGAATTTATAACCATGGAAAAATATACGATATGTTGTTTACGTTAAAAAAATGTGAAATGATTGATTTAAAATAAAATTATAAAAACAAAAATATGTTTTATATAATGCAATTATGCTAAGTATCCGATCACTTTTGAG
Coding sequence (CDS)
ATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAA
Protein sequence
MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNATLPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVAEINHIRLFWPENEENRNGEDPASKRLKKEEFEDGDCSVCLQELKDEVCRILK
Homology
BLAST of Clc07G01960 vs. NCBI nr
Match:
XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida])
HSP 1 Score: 144.8 bits (364), Expect = 6.8e-31
Identity = 91/205 (44.39%), Postives = 111/205 (54.15%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
MSL T + R L RND G DQ L IR+G L RL+SR P G+PY+I E S T
Sbjct: 1 MSLETASTFRYSLRRND-GVDQSLHIRLGFLWRLLSRSPSSGLPYEILYEIPSSSPRETT 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PL LR L+DPLFC +YIA L AV D +AR ITS VVE+L GNYD KF + A
Sbjct: 61 FPLSLRDLEDPLFCEAYIAQLLHSLDLGAVTCDIVARKITSVVVEVLESGNYDVKFQIAA 120
Query: 121 EINHIRLFWPENEEN----RNGE----------------------DPASKRLKKEEFED- 171
EI+H+++FW E E + NGE + SKRLK E+F++
Sbjct: 121 EIDHVQMFWAEEERSSVPVENGERRGIVVEERAVLEEAPARRRAAERESKRLKMEKFDEL 180
BLAST of Clc07G01960 vs. NCBI nr
Match:
XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 85/200 (42.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
MSLA RC LHR D G DQ L+IR+G RL++ PF G P+ I E+ ++ +A
Sbjct: 1 MSLADLATFRCNLHRYD-GPDQLLQIRIGHSSRLLTGSPFSGYPFNIVHETLPTTMADAQ 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFC +YI FLS + A + IAR I S VV+ +A GNY+ F +VA
Sbjct: 61 FPLPLRELEDPLFCQAYIKEFLSSYNLGATIKNAIARRIASFVVQ-MACGNYEMTFYIVA 120
Query: 121 EINHIRLFW----------PENEE-----------NRNGEDPASKRLKKEEFED------ 171
EI++I++FW E+EE R + A +RLKKE+F+
Sbjct: 121 EIDYIQMFWMDDSATAAEEEEDEEEETEIFDDFSGRRGAPETAIERLKKEKFDGFGGEDL 180
BLAST of Clc07G01960 vs. NCBI nr
Match:
XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida])
HSP 1 Score: 135.2 bits (339), Expect = 5.4e-28
Identity = 85/197 (43.15%), Postives = 113/197 (57.36%), Query Frame = 0
Query: 2 SLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNATL 61
SL T + R L R+D DQ L IR+G + R +SR P G+PY+I ES+ +
Sbjct: 3 SLQTASTFRFSLRRHDDSDDQSLLIRLGFMHRQLSRSPSAGLPYEILHESNSIPMRINMF 62
Query: 62 PLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVAE 121
PLPLR L+DPL C Y+ LS+ +AVA D IA +ITS + E+LA GN++ KF +VA+
Sbjct: 63 PLPLRDLEDPLLCRVYVLRLLSYLDLNAVACDIIAHDITSFICEVLAAGNFEVKFRIVAD 122
Query: 122 INHIRLFWPEN-EENRNG----------EDP--------ASKRLKKEEF------EDGDC 171
I+HIR+FW E E+R G E P A +RLK+E+F E GDC
Sbjct: 123 IDHIRMFWREQIGESRRGVVAEETVILEEAPTRRTAAKTAIERLKREKFDGFRGEELGDC 182
BLAST of Clc07G01960 vs. NCBI nr
Match:
XP_023539485.1 (RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 129.0 bits (323), Expect = 3.9e-26
Identity = 81/205 (39.51%), Postives = 111/205 (54.15%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
MS A + RC LHR D G Q L+IR+G RL+ F G P+ I E+ + +A
Sbjct: 1 MSFADSITFRCNLHRYD-GLYQLLQIRIGHSTRLLIGSSFPGYPFNIVYETLTTRMADAQ 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFC +YI FLS + A ++ IA+ ITS VV+ +A GNY+ F +VA
Sbjct: 61 FPLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRITSFVVQ-MACGNYEMTFYIVA 120
Query: 121 EINHIRLFWPEN-------------------------EENRNGEDPASKRLKKEEFED-- 172
EI++I++FW + E R + A +RLKKE+F+
Sbjct: 121 EIDYIQMFWLDQSAIATEEEEEEEDEEEEVEVIFDNFSERRGAPETAIERLKKEKFDGFG 180
BLAST of Clc07G01960 vs. NCBI nr
Match:
XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 127.9 bits (320), Expect = 8.6e-26
Identity = 83/212 (39.15%), Postives = 113/212 (53.30%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
MSLA + RC LHR D DQ L+IR+ RL++ PF G P+ I E+ ++ +A
Sbjct: 1 MSLADSATFRCNLHRYD-DPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQ 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFC +YI FLS + A + IAR I S VV+ +A GNY+ F +VA
Sbjct: 61 FPLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQ-MACGNYEMTFYIVA 120
Query: 121 EINHIRLFW--------------------PENEE-------------NRNGEDPASKRLK 171
EI++I++FW E+EE R + A +RLK
Sbjct: 121 EIDYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLK 180
BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match:
A0A5D3D7E9 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001290 PE=4 SV=1)
HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
M+L + R + R +G Q L+IR+GR+ L+SR P G+PY+I E+S S+ AT
Sbjct: 1 MTLDGASTFRYSIRRKEGSIQQSLQIRLGRVVSLLSRPPSAGLPYEILKETSSISIQEAT 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR L+D C YI LS F V S I+R ITS VVE+LA G+YD KF +VA
Sbjct: 61 FPLPLRDLEDSCLCEIYIVQLLSSFNLGTVTSGIISRKITSMVVEVLAAGDYDTKFQIVA 120
Query: 121 EINHIRL-FWPENEE--------NRNG-------------------EDPASKRLKKEEFE 165
EI+HI++ FW E EE N +G A++R +K F+
Sbjct: 121 EIDHIQMYFWGEEEERSWVGRGNNNSGIRRGVVVEERVVLEGVPARRRAAAEREEKGGFD 180
BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match:
A0A0A0L2F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036440 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
M L + + R + R G +Q L+IR+GR+ RL+S P G+PY+I ES+ + AT
Sbjct: 1 MPLESASTFRYSIRRR-CGVEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEAT 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR ++D C YI LS F V S I++ ITS VVE+L G+YDAKF +VA
Sbjct: 61 FPLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVA 120
Query: 121 EINHIRL-FWPENEE 135
EI+HIR+ FW E EE
Sbjct: 121 EIDHIRMYFWTEEEE 134
BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match:
A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
M A + +R L RN G DQ L++R+G RLISR P G+PY I E+ + +A
Sbjct: 1 MPFANASTLRYSLRRNH-GADQLLQLRLGYSSRLISRSPSAGLPYDILEETPSTPMADAL 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFCH+Y+ +S F +V + I + ITS V + A +YDAKF LVA
Sbjct: 61 FPLPLRELEDPLFCHAYLVELVSSFNLGSVTWNPIVQKITSFVTQ-WAAVDYDAKFQLVA 120
Query: 121 EINHIRLFWPENEENRNG-----------EDPASKRLKKEEFEDGDCSVCLQELKDE 167
+I++I++FW E G E+ +K+ +CSVC + + E
Sbjct: 121 DIDYIQMFWMEKHRGSVGRGVMVEERVVLEETGVAAAEKQGIGGEECSVCYESYEAE 175
BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match:
A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
M A ++ +R L R D GTDQ L++R+G RLISR P+ G+PY I E+ + +
Sbjct: 1 MLFANSSTLRYSLRRKD-GTDQLLQVRLGYSSRLISRSPYSGLPYDILEETPSTLIADTL 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFCH+Y+ +S +++ + IA+ ITS V + A +YD KF LVA
Sbjct: 61 FPLPLRELEDPLFCHAYLVELVSSLNLDSISCNPIAQKITSLVTQ-WAAVDYDLKFQLVA 120
Query: 121 EINHIRLFWPEN-----------EENRNGED---PASKRLKKEEFEDGDCSVCLQELKDE 167
+I++I++FW E EE E+ A+ K+ +CSVC + +E
Sbjct: 121 DIDYIQMFWREESRGPVRRGVMVEEKVVLEEAGVAATSAAGKQGMGGEECSVCYECYDEE 178
BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match:
A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 6.9e-21
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 0
Query: 1 MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
M A ++ +R L R+ GTDQ L++R+G RLIS+ P G+PY I E+ L + +A
Sbjct: 1 MLFANSSTLRYSLRRHH-GTDQLLQVRLGYSSRLISQSPSAGLPYDILEETPLTPIADAL 60
Query: 61 LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
PLPLR+L+DPLFCH+Y+ +S +++ + I + ITS V + A +YDAKF LV
Sbjct: 61 FPLPLRELEDPLFCHAYLVELVSSLNLDSMSCNPIIQKITSLVTQ-WAAVDYDAKFQLVV 120
Query: 121 EINHIRLFWPE 132
+I++I++FW E
Sbjct: 121 DIDYIQMFWRE 129
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038876865.1 | 6.8e-31 | 44.39 | putative RING-H2 finger protein ATL53 [Benincasa hispida] | [more] |
XP_023539480.1 | 1.1e-28 | 42.50 | E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo] | [more] |
XP_038905732.1 | 5.4e-28 | 43.15 | E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida] | [more] |
XP_023539485.1 | 3.9e-26 | 39.51 | RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo] | [more] |
XP_023539471.1 | 8.6e-26 | 39.15 | uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D7E9 | 1.2e-25 | 39.59 | E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A0A0L2F8 | 9.6e-23 | 46.67 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036440 PE=4 SV=1 | [more] |
A0A6J1G7L1 | 1.3e-22 | 37.85 | NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE... | [more] |
A0A6J1G7R8 | 1.4e-21 | 37.22 | E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... | [more] |
A0A6J1L191 | 6.9e-21 | 42.75 | E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111... | [more] |
Match Name | E-value | Identity | Description | |