Clc07G01960 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G01960
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF181-like protein
LocationClcChr07: 1999424 .. 2000287 (-)
RNA-Seq ExpressionClc07G01960
SyntenyClc07G01960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTTTTATTTCTGGTAGAAACAAAAATCTCCTAATGGAAAAGGAAAATTAAAACTTCCTAATTGGAAGGCTCTCCGTCTGGTTGGATTATAAATAAATAAAAAACCCTAAGTTGGTAATTTAATTGGTAATAACAACAATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAACAAATAAAAAAAGAAAAGATTTAGTAAAATAAAAAAACACAAGTGTACAATATGCTGACATACGAGTGAATTTATAACCATGGAAAAATATACGATATGTTGTTTACGTTAAAAAAATGTGAAATGATTGATTTAAAATAAAATTATAAAAACAAAAATATGTTTTATATAATGCAATTATGCTAAGTATCCGATCACTTTTGAG

mRNA sequence

TGCCTTTTATTTCTGGTAGAAACAAAAATCTCCTAATGGAAAAGGAAAATTAAAACTTCCTAATTGGAAGGCTCTCCGTCTGGTTGGATTATAAATAAATAAAAAACCCTAAGTTGGTAATTTAATTGGTAATAACAACAATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAACAAATAAAAAAAGAAAAGATTTAGTAAAATAAAAAAACACAAGTGTACAATATGCTGACATACGAGTGAATTTATAACCATGGAAAAATATACGATATGTTGTTTACGTTAAAAAAATGTGAAATGATTGATTTAAAATAAAATTATAAAAACAAAAATATGTTTTATATAATGCAATTATGCTAAGTATCCGATCACTTTTGAG

Coding sequence (CDS)

ATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAA

Protein sequence

MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNATLPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVAEINHIRLFWPENEENRNGEDPASKRLKKEEFEDGDCSVCLQELKDEVCRILK
Homology
BLAST of Clc07G01960 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-31
Identity = 91/205 (44.39%), Postives = 111/205 (54.15%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           MSL T +  R  L RND G DQ L IR+G L RL+SR P  G+PY+I  E    S    T
Sbjct: 1   MSLETASTFRYSLRRND-GVDQSLHIRLGFLWRLLSRSPSSGLPYEILYEIPSSSPRETT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PL LR L+DPLFC +YIA  L      AV  D +AR ITS VVE+L  GNYD KF + A
Sbjct: 61  FPLSLRDLEDPLFCEAYIAQLLHSLDLGAVTCDIVARKITSVVVEVLESGNYDVKFQIAA 120

Query: 121 EINHIRLFWPENEEN----RNGE----------------------DPASKRLKKEEFED- 171
           EI+H+++FW E E +     NGE                      +  SKRLK E+F++ 
Sbjct: 121 EIDHVQMFWAEEERSSVPVENGERRGIVVEERAVLEEAPARRRAAERESKRLKMEKFDEL 180

BLAST of Clc07G01960 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 85/200 (42.50%), Postives = 114/200 (57.00%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           MSLA     RC LHR D G DQ L+IR+G   RL++  PF G P+ I  E+   ++ +A 
Sbjct: 1   MSLADLATFRCNLHRYD-GPDQLLQIRIGHSSRLLTGSPFSGYPFNIVHETLPTTMADAQ 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFC +YI  FLS +   A   + IAR I S VV+ +A GNY+  F +VA
Sbjct: 61  FPLPLRELEDPLFCQAYIKEFLSSYNLGATIKNAIARRIASFVVQ-MACGNYEMTFYIVA 120

Query: 121 EINHIRLFW----------PENEE-----------NRNGEDPASKRLKKEEFED------ 171
           EI++I++FW           E+EE            R   + A +RLKKE+F+       
Sbjct: 121 EIDYIQMFWMDDSATAAEEEEDEEEETEIFDDFSGRRGAPETAIERLKKEKFDGFGGEDL 180

BLAST of Clc07G01960 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-28
Identity = 85/197 (43.15%), Postives = 113/197 (57.36%), Query Frame = 0

Query: 2   SLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNATL 61
           SL T +  R  L R+D   DQ L IR+G + R +SR P  G+PY+I  ES+   +     
Sbjct: 3   SLQTASTFRFSLRRHDDSDDQSLLIRLGFMHRQLSRSPSAGLPYEILHESNSIPMRINMF 62

Query: 62  PLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVAE 121
           PLPLR L+DPL C  Y+   LS+   +AVA D IA +ITS + E+LA GN++ KF +VA+
Sbjct: 63  PLPLRDLEDPLLCRVYVLRLLSYLDLNAVACDIIAHDITSFICEVLAAGNFEVKFRIVAD 122

Query: 122 INHIRLFWPEN-EENRNG----------EDP--------ASKRLKKEEF------EDGDC 171
           I+HIR+FW E   E+R G          E P        A +RLK+E+F      E GDC
Sbjct: 123 IDHIRMFWREQIGESRRGVVAEETVILEEAPTRRTAAKTAIERLKREKFDGFRGEELGDC 182

BLAST of Clc07G01960 vs. NCBI nr
Match: XP_023539485.1 (RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-26
Identity = 81/205 (39.51%), Postives = 111/205 (54.15%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           MS A +   RC LHR D G  Q L+IR+G   RL+    F G P+ I  E+    + +A 
Sbjct: 1   MSFADSITFRCNLHRYD-GLYQLLQIRIGHSTRLLIGSSFPGYPFNIVYETLTTRMADAQ 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFC +YI  FLS +   A  ++ IA+ ITS VV+ +A GNY+  F +VA
Sbjct: 61  FPLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRITSFVVQ-MACGNYEMTFYIVA 120

Query: 121 EINHIRLFWPEN-------------------------EENRNGEDPASKRLKKEEFED-- 172
           EI++I++FW +                           E R   + A +RLKKE+F+   
Sbjct: 121 EIDYIQMFWLDQSAIATEEEEEEEDEEEEVEVIFDNFSERRGAPETAIERLKKEKFDGFG 180

BLAST of Clc07G01960 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 8.6e-26
Identity = 83/212 (39.15%), Postives = 113/212 (53.30%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           MSLA +   RC LHR D   DQ L+IR+    RL++  PF G P+ I  E+   ++ +A 
Sbjct: 1   MSLADSATFRCNLHRYD-DPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQ 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFC +YI  FLS +   A   + IAR I S VV+ +A GNY+  F +VA
Sbjct: 61  FPLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQ-MACGNYEMTFYIVA 120

Query: 121 EINHIRLFW--------------------PENEE-------------NRNGEDPASKRLK 171
           EI++I++FW                     E+EE              R   + A +RLK
Sbjct: 121 EIDYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLK 180

BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match: A0A5D3D7E9 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001290 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M+L   +  R  + R +G   Q L+IR+GR+  L+SR P  G+PY+I  E+S  S+  AT
Sbjct: 1   MTLDGASTFRYSIRRKEGSIQQSLQIRLGRVVSLLSRPPSAGLPYEILKETSSISIQEAT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR L+D   C  YI   LS F    V S  I+R ITS VVE+LA G+YD KF +VA
Sbjct: 61  FPLPLRDLEDSCLCEIYIVQLLSSFNLGTVTSGIISRKITSMVVEVLAAGDYDTKFQIVA 120

Query: 121 EINHIRL-FWPENEE--------NRNG-------------------EDPASKRLKKEEFE 165
           EI+HI++ FW E EE        N +G                      A++R +K  F+
Sbjct: 121 EIDHIQMYFWGEEEERSWVGRGNNNSGIRRGVVVEERVVLEGVPARRRAAAEREEKGGFD 180

BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match: A0A0A0L2F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036440 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M L + +  R  + R   G +Q L+IR+GR+ RL+S  P  G+PY+I  ES+   +  AT
Sbjct: 1   MPLESASTFRYSIRRR-CGVEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEAT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR ++D   C  YI   LS F    V S  I++ ITS VVE+L  G+YDAKF +VA
Sbjct: 61  FPLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVA 120

Query: 121 EINHIRL-FWPENEE 135
           EI+HIR+ FW E EE
Sbjct: 121 EIDHIRMYFWTEEEE 134

BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M  A  + +R  L RN  G DQ L++R+G   RLISR P  G+PY I  E+    + +A 
Sbjct: 1   MPFANASTLRYSLRRNH-GADQLLQLRLGYSSRLISRSPSAGLPYDILEETPSTPMADAL 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFCH+Y+   +S F   +V  + I + ITS V +  A  +YDAKF LVA
Sbjct: 61  FPLPLRELEDPLFCHAYLVELVSSFNLGSVTWNPIVQKITSFVTQ-WAAVDYDAKFQLVA 120

Query: 121 EINHIRLFWPENEENRNG-----------EDPASKRLKKEEFEDGDCSVCLQELKDE 167
           +I++I++FW E      G           E+      +K+     +CSVC +  + E
Sbjct: 121 DIDYIQMFWMEKHRGSVGRGVMVEERVVLEETGVAAAEKQGIGGEECSVCYESYEAE 175

BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M  A ++ +R  L R D GTDQ L++R+G   RLISR P+ G+PY I  E+    + +  
Sbjct: 1   MLFANSSTLRYSLRRKD-GTDQLLQVRLGYSSRLISRSPYSGLPYDILEETPSTLIADTL 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFCH+Y+   +S     +++ + IA+ ITS V +  A  +YD KF LVA
Sbjct: 61  FPLPLRELEDPLFCHAYLVELVSSLNLDSISCNPIAQKITSLVTQ-WAAVDYDLKFQLVA 120

Query: 121 EINHIRLFWPEN-----------EENRNGED---PASKRLKKEEFEDGDCSVCLQELKDE 167
           +I++I++FW E            EE    E+    A+    K+     +CSVC +   +E
Sbjct: 121 DIDYIQMFWREESRGPVRRGVMVEEKVVLEEAGVAATSAAGKQGMGGEECSVCYECYDEE 178

BLAST of Clc07G01960 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.9e-21
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M  A ++ +R  L R+  GTDQ L++R+G   RLIS+ P  G+PY I  E+ L  + +A 
Sbjct: 1   MLFANSSTLRYSLRRHH-GTDQLLQVRLGYSSRLISQSPSAGLPYDILEETPLTPIADAL 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR+L+DPLFCH+Y+   +S     +++ + I + ITS V +  A  +YDAKF LV 
Sbjct: 61  FPLPLRELEDPLFCHAYLVELVSSLNLDSMSCNPIIQKITSLVTQ-WAAVDYDAKFQLVV 120

Query: 121 EINHIRLFWPE 132
           +I++I++FW E
Sbjct: 121 DIDYIQMFWRE 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876865.16.8e-3144.39putative RING-H2 finger protein ATL53 [Benincasa hispida][more]
XP_023539480.11.1e-2842.50E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
XP_038905732.15.4e-2843.15E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida][more]
XP_023539485.13.9e-2639.51RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo][more]
XP_023539471.18.6e-2639.15uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D7E91.2e-2539.59E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A0A0L2F89.6e-2346.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036440 PE=4 SV=1[more]
A0A6J1G7L11.3e-2237.85NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE... [more]
A0A6J1G7R81.4e-2137.22E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
A0A6J1L1916.9e-2142.75E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G01960.1Clc07G01960.1mRNA