Clc07G01750 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G01750
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein FAM98A-like isoform X1
Location	ClcChr07: 1843393 .. 1846215 (+)
RNA-Seq Expression	Clc07G01750
Synteny	Clc07G01750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTGAGAGGTTTTAGGTTCTTCTCAAGTGATACAGTTAACAGTTCCCCTGTGGCCCGTTAGGGTTTCTGATTTTATCTCATCATCGTCTTCGTCACTCTCCCTCTCTATCGCTTTCCCTTCAATCACGACGCCATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACATCTTCAGGTTTATCTTCTCCTCATTCGATCTCCTTTCTCCTTCATTTTCATCTGCTTGTCGGAGTTCCGCCTGCTGATTTTGTAGCAATGCTGTGTCTGTTCTGTAGGCTTGGGTTCGTCTGTCTGAACTTTCGTGTTTTGTTTAATTTGGAACAGTCTTGGTGTCTATCGATTTGGGTATTTCTCATTGGATGATTTTGTGATTGTATTGATATGTTAATGATGACTAGTCTGATATCTTTTTGGGTTGTTGGGGATTTTTTTTTTTCTCTTCACTTAGTTTCATTGGATGTGCATGCTGTTTTTATAAGGAACAAATATTTGAATGAAAAGATGAAACATGTTGAAGGATTCCAAGGAGATAACAAATACACTCTAATTGGAGACTGACCATAAAACTCATGCAACTAGAGGTCTGTTGAGAAGTAACAAAAACATTGGTCCCCAAGCTCCATGTTTAAGGTTTAAACATCATCAAAGTTATTTTTAAATTTAGTTTAATGTTAGTTATAATGTGTCCACTACTTTTGATTGTCCTACTGTCATCTGTTTAATCCTTGGTGCACCCTCTTCTTGTTTTTCTTCTGATTTTTATCTTATTCTTGTTCTTTTTTAAGCACCTTTTGCCTTTGAGTATGTTGTTTGATAAATGGTTTATAGTATTTTGGTTATCAGCAAGACTGCATTACATAGGATGTTGTTCTTCTTGGAACTTATTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGGTTTGTTTCCTTTATAATATGCGTGCCTCTGAGTGCAAATATTTCATGATTGATAAGCCATGTGTATCCCCAAAACAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGTAAGTTTTTTTATTTTCTGCATTCAAATTTCAAGTTTAATTTAATTGTATGATAAAGAATTGAGAGGCTAATTGTGTTTAATTTGATTTGCACTCATATATACAGCATTCACAACTTTGTTGCATGTTCTATGGGTTTGTAGTATGTAGTCTTGTACTTTAGATGTGCAAGAAATAACTTCTAACATGTCACGCAGGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTAAGTTGTTTTGGAAACTTCACAATTTGGTATAAAATGTGGCATTTAGTTATTTTTCTTGCATGTTTCATGCTTTTGGTTTCTTCTGTATGTATGAGGATGAATTAACTTCTGTGCGTAGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGGTGATTTCAGCAACACTTCATTATTGGATTATGGAACTCTGCCTTGTCTGGACTTTGACATATTTCTGCCACTTTTGCAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGGTGAATATGGAACTGTCAAATAATTTCGATAGAAGTATGCTTTGAAGTGTTCAGTGTATTGCATTTGACTTTGTATTGTTCTGGAGTACGATTTTTAACTCTCGTGAGATTTCTTCATCATAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGTAAGTTTTTTTCTTAACGTTCTCCATGCATCACAAAAGTATAAGCCAAGAGTCTGTCTTTGAGTTGACTGAGGAATGTACGCGGTCAAGTCTTGAAATGCATCGTCTCATTGATTTTTCTTCAAAATTATAACTAGTAATTTAGGGTAGTATATGTAGACGTCTGATCAATGTAATGTTTGCAAAATGCTCTTGTGGGAACAAGGCGTTTCAAGCAATTATTATCCTCCTGCAGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAGACGAAATCAAAACGTATTCGTTTGTTCCTCCTACCTCTTGCTTGAGCTATAAATGCTTGCCTTGGCCAGTGGGATGAATTATCACATATTTGTTTTGATAGCTTGAAATTCAGTTTTTACAATTTCCAGCGTTTTTAGGCAGTGTCTTTTTCTTCTTTTCTTCTTTTTTCTTCTTTTCTTTTAAGATAATATGGGGAATGCAGCATTGTATTTGTGGGGCAAGGTTGCTTTTTTGGTTCCATGTTTTTTGCATTTTTAGCTTAAGGGCAATCAGTTTATTGTTTGTTATTAATGTAATTCGTTTTACCAATG

mRNA sequence

CCTTTGAGAGGTTTTAGGTTCTTCTCAAGTGATACAGTTAACAGTTCCCCTGTGGCCCGTTAGGGTTTCTGATTTTATCTCATCATCGTCTTCGTCACTCTCCCTCTCTATCGCTTTCCCTTCAATCACGACGCCATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACATCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGGTGATTTCAGCAACACTTCATTATTGGATTATGGAACTCTGCCTTGTCTGGACTTTGACATATTTCTGCCACTTTTGCAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAGACGAAATCAAAACGTATTCGTTTGTTCCTCCTACCTCTTGCTTGAGCTATAAATGCTTGCCTTGGCCAGTGGGATGAATTATCACATATTTGTTTTGATAGCTTGAAATTCAGTTTTTACAATTTCCAGCGTTTTTAGGCAGTGTCTTTTTCTTCTTTTCTTCTTTTTTCTTCTTTTCTTTTAAGATAATATGGGGAATGCAGCATTGTATTTGTGGGGCAAGGTTGCTTTTTTGGTTCCATGTTTTTTGCATTTTTAGCTTAAGGGCAATCAGTTTATTGTTTGTTATTAATGTAATTCGTTTTACCAATG

Coding sequence (CDS)

ATGGATAGATACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATTAACGAAAATGAGATCCGAATCACTAGTCAAGGCGCCATTCGTAACTACATCACCTATGCTTCTACACATCTTCAGGAAAAACGTGTCAGAGAGATCGTCTTAAAAGCAATGGGACAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGTTGCATCAGGAAACGGCTATCAGCTCAGTTAGCATAACTGATGTATGGGAGCCCATTGAAGAGGGTCTTGTACCGGTGGAGATGACTCGTCATGTCTCAATGATTTCAATTACCTTGTCCAATCGGGAGCTAAATAAAAATTCTCCGGGGTACCAAGCTCCACACTTTGTGGAACAGCCAAAGCAACAATACAACAATCAGCAGCCGCTGCCACAACAACAACCCCCCAGACAACCACGCGTTTATCACAATGCTGCTAACGAAGGTGATTTCAGCAACACTTCATTATTGGATTATGGAACTCTGCCTTGTCTGGACTTTGACATATTTCTGCCACTTTTGCAGATCCATATGGCCAAGGAAGAGGGCGTGGTAGAGGGAGAGGGCGTGGTTGGGGAAGAGGTGGATATGGGAACTATCAAGGTGGATATGGCAACTACCAAGGTGGATACGGCCACTACCAAGGTGGTTACGGCCACTACCAAGGTGGATCTGATAACTACCAAGGTGGACCTGGATATTATCAAGATAATGGTGGGTACTCAAATTGGGGAAGAGGAGGTGGACGGAGTAGAGGCTGGGCCTACCGTGGAGCTGGATATGAAAGAGGCAGAGGGGGTAGAGGTTATGGCCGTGGACGGGGGCGAATGGGCGGTCGCACAAGGGGTGGCGGAGGAAACCAGGCTTAGACGAAATCAAAACGTATTCGTTTGTTCCTCCTACCTCTTGCTTGAGCTATAA

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDFSNTSLLDYGTLPCLDFDIFLPLLQIHMAKEEGVVEGEGVVGEEVDMGTIKVDMATTKVDTATTKVVTATTKVDLITTKVDLDIIKIMVGTQIGEEEVDGVEAGPTVELDMKEAEGVEVMAVDGGEWAVAQGVAEETRLRRNQNVFVCSSYLLLEL

Homology

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BLAST of Clc07G01750 vs. NCBI nr
Match: XP_038888002.1 (protein FAM98A-like isoform X3 [Benincasa hispida])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-80
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDFSN 167
           SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNA NEG F++
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAVNEGTFAD 166

[Close]

BLAST of Clc07G01750 vs. NCBI nr
Match: XP_038888000.1 (protein FAM98A-like isoform X1 [Benincasa hispida])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-80
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDFSN 167
           SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNA NEG F++
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAVNEGTFAD 166

[Close]

BLAST of Clc07G01750 vs. NCBI nr
Match: KAG7011317.1 (Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 3.0e-80
Identity = 199/307 (64.82%), Postives = 215/307 (70.03%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPE PI+ENEIRIT+QGAIRNYITYAST LQEKRVR+IVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPELPISENEIRITTQGAIRNYITYASTLLQEKRVRDIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVP   + +++  S + S+R     
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVP--QSNNITTSSSSSSSRP---- 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDFSNTSLLDYGTLPCLDF 180
                            NN  P                                    D 
Sbjct: 121 -----------------NNHHP------------------------------------DN 180

Query: 181 DIFLP--LLQIHMAKEEGVVEGEGVVGEEVDMGTIKVDMATTKVDTATTKVVTATTKVDL 240
            +F+   L++IHMAK EGVVEGEGVVGEEVDMGTIKVD ATTKVD ATTKV TATTKV L
Sbjct: 181 LVFITMLLMKIHMAKAEGVVEGEGVVGEEVDMGTIKVDTATTKVDMATTKVATATTKVVL 240

Query: 241 ITTKVDLDIIKIMVGTQIGEEEVDGVEAGPTVELDMKEA-EGVEVMAVDGGEWAVAQ-GV 300
            TTKV L IIKIMV T+IG+EEV GVEAGPTVELD KEA E VEV+AVDGGEW VAQ G 
Sbjct: 241 TTTKVVLAIIKIMVDTRIGDEEVGGVEAGPTVELDTKEAEEEVEVIAVDGGEWVVAQGGA 248

Query: 301 AEETRLR 304
           A ETRLR
Sbjct: 301 AGETRLR 248

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BLAST of Clc07G01750 vs. NCBI nr
Match: XP_038888001.1 (protein FAM98A-like isoform X2 [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 4.3e-79
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDF 165
           SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNA NE  +
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAVNEDPY 164

[Close]

BLAST of Clc07G01750 vs. NCBI nr
Match: XP_031737653.1 (RNA-binding protein FUS isoform X1 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-77
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDF 165
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE  +
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPY 164

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BLAST of Clc07G01750 vs. ExPASy Swiss-Prot
Match: Q8N5L8 (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens OX=9606 GN=RPP25L PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-12
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 1   MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAM 60
           M+ Y+K          P P+ P +  E+R+     IRN +  A   L+    R +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query: 61  GQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI--EEGLVPVEMTRHVSMISIT 120
           G+A  KAV+ AEI+K+R+  LHQ T +  +   D W P   + GL P+ + RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 121 LSNRELNKNSPGYQAP 128
           LS   L+ N  GYQ P
Sbjct: 121 LSRDPLDPNECGYQPP 136

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BLAST of Clc07G01750 vs. ExPASy Swiss-Prot
Match: Q99JH1 (Ribonuclease P protein subunit p25-like protein OS=Mus musculus OX=10090 GN=Rpp25l PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 10  PKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKAVAIAEILKK 69
           P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  KAV+ AEI+K+
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RISRLHQETAISSVSITDVWEPI--EEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAP 128
           R+  LHQ T +  +   D W P   + GL P+ + RHV  + + LS   L+ +  GYQ P
Sbjct: 77  RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

[Close]

BLAST of Clc07G01750 vs. ExPASy Swiss-Prot
Match: Q2KIR4 (Ribonuclease P protein subunit p25-like protein OS=Bos taurus OX=9913 GN=RPP25L PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-10
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 1   MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAM 60
           M+ Y+K          P P+ P +  E+R+ +   IRN +  A   L+    R +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60

Query: 61  GQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI--EEGLVPVEMTRHVSMISIT 120
           G+A  KAV+ AEI+K+R+  L+Q T +  +   D W P   + GL P+ +  HV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 121 LSNRELNKNSPGYQAP 128
           LS   L+ N  GYQ P
Sbjct: 121 LSRDPLDPNEYGYQPP 136

[Close]

BLAST of Clc07G01750 vs. ExPASy Swiss-Prot
Match: Q9BUL9 (Ribonuclease P protein subunit p25 OS=Homo sapiens OX=9606 GN=RPP25 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09
Identity = 36/118 (30.51%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 21  IRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAI 80
           +R+     IRN + +A+  + +   R IV    G+A +K V  AEILK+R++ LHQ T +
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  SSVSITDVWEPIEEG----------LVPVEMTRHVSMISITLSNRELNKNSPGYQAPH 129
              S+ +VW+ +  G             + + ++V  ++I LS   L+   PGYQ P+
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN 155

[Close]

BLAST of Clc07G01750 vs. ExPASy Swiss-Prot
Match: Q91WE3 (Ribonuclease P protein subunit p25 OS=Mus musculus OX=10090 GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.3e-09
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 21  IRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAI 80
           +R+     IRN + +A+  + +   R IV    G+A +K V  AEILK+R++ LHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  SSVSITDVWEPIEEGLVP----------VEMTRHVSMISITLSNRELNKNSPGYQAPHFV 134
              S+ +VW+ +  G  P          + + ++V  ++I LS   L+    GYQ P+  
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157

[Close]

BLAST of Clc07G01750 vs. ExPASy TrEMBL
Match: A0A5A7VGR8 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003370 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDF 165
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE  +
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPY 164

[Close]

BLAST of Clc07G01750 vs. ExPASy TrEMBL
Match: A0A1S3BYB0 (protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDF 165
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE  +
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPY 164

[Close]

BLAST of Clc07G01750 vs. ExPASy TrEMBL
Match: A0A1S3C001 (protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDF 165
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE  +
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNEDPY 164

[Close]

BLAST of Clc07G01750 vs. ExPASy TrEMBL
Match: A0A5A7UHR2 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00070 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 156/161 (96.89%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSN ELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNGELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANE 162
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNE 161

[Close]

BLAST of Clc07G01750 vs. ExPASy TrEMBL
Match: A0A5D3DWB1 (Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00450 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 156/161 (96.89%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYAST LQEKRVREIVLKAMGQAISKA
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSN ELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNGELNKN 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANE 162
           SPGYQAPHFVEQPKQQYNNQQPLPQ  PPRQPRVYHNA NE
Sbjct: 121 SPGYQAPHFVEQPKQQYNNQQPLPQPPPPRQPRVYHNAVNE 161

[Close]

BLAST of Clc07G01750 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-53
Identity = 136/248 (54.84%), Postives = 158/248 (63.71%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++ LQEK V++IVLKAMGQAISK 
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           VAI+EILK +I  LHQ+ AISS+SITDVWEP EEGL PVE+TRHVSMISITLS  ELNK+
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 121 SPGYQAPHFVEQPKQQYNNQQPLPQQQPPRQPRVYHNAANEGDFSNTSLLDYGTLPCLDF 180
           SPGYQAP   +Q K QY       Q Q  RQ R+ +NA             YG       
Sbjct: 121 SPGYQAPAQSDQSKPQY-------QPQQGRQARLPYNA-------------YG------- 180

Query: 181 DIFLPLLQIHMAKEEGVVEGEGVVGEEVDMGTIKVDMATTKVDTATTKVVTATTKVDLIT 240
                        EEG V  EG  GEEVDM T K  M   +    T K +  T KV + T
Sbjct: 181 -------------EEGEVVAEGEAGEEVDMETTKGVM--KEKTKGTIKKIIKTMKVGIQT 206

Query: 241 TKVDLDII 249
               +D++
Sbjct: 241 RAEAVDVV 206

[Close]

BLAST of Clc07G01750 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 161.8 bits (408), Expect = 9.3e-40
Identity = 84/134 (62.69%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA T LQ+K   E+V KAMG+AI+K 
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           V I E++K+RI  LHQ T+I S  ITD WEP EEGL+P+E TRHVSMI+ITLS  ELN +
Sbjct: 61  VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query: 121 SPGYQAPHFVEQPK 135
           S GYQ P  +E  K
Sbjct: 121 SVGYQCPIPIELVK 134

[Close]

BLAST of Clc07G01750 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-37
Identity = 86/157 (54.78%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTHLQEKRVREIVLKAMGQAISKA 60
           MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA   LQE +  E++ KAMG+AI+K+
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120
           V I E++K+RI  LHQ T+I S  ITD WEP EEGL  +E TRHVSMI+ITLS  +LN +
Sbjct: 61  VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query: 121 SPGYQAPHFVEQPKQ----QYNNQQPLPQQQPPRQPR 154
           S GYQ P  +E  K      Y  Q   P+ +  R+ R
Sbjct: 121 SVGYQCPIPIEMVKPLAEIDYEGQDGSPRGRGGRRGR 157

The following BLAST results are available for this feature:

BLAST of Clc07G01750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888002.1	1.7e-80	96.99	protein FAM98A-like isoform X3 [Benincasa hispida]	[more]
XP_038888000.1	1.7e-80	96.99	protein FAM98A-like isoform X1 [Benincasa hispida]	[more]
KAG7011317.1	3.0e-80	64.82	Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. a...	[more]
XP_038888001.1	4.3e-79	96.95	protein FAM98A-like isoform X2 [Benincasa hispida]	[more]
XP_031737653.1	1.1e-77	95.73	RNA-binding protein FUS isoform X1 [Cucumis sativus]	[more]

BLAST of Clc07G01750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8N5L8	8.0e-12	33.82	Ribonuclease P protein subunit p25-like protein OS=Homo sapiens OX=9606 GN=RPP25...	[more]
Q99JH1	2.3e-11	35.00	Ribonuclease P protein subunit p25-like protein OS=Mus musculus OX=10090 GN=Rpp2...	[more]
Q2KIR4	1.2e-10	32.35	Ribonuclease P protein subunit p25-like protein OS=Bos taurus OX=9913 GN=RPP25L ...	[more]
Q9BUL9	4.8e-09	30.51	Ribonuclease P protein subunit p25 OS=Homo sapiens OX=9606 GN=RPP25 PE=1 SV=1	[more]
Q91WE3	6.3e-09	30.08	Ribonuclease P protein subunit p25 OS=Mus musculus OX=10090 GN=Rpp25 PE=2 SV=1	[more]

BLAST of Clc07G01750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGR8	5.1e-78	95.73	Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BYB0	5.1e-78	95.73	protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1	[more]
A0A1S3C001	5.1e-78	95.73	protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1	[more]
A0A5A7UHR2	5.6e-77	96.89	Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DWB1	5.6e-77	96.89	Protein FAM98A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Clc07G01750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07030.1	2.5e-53	54.84	Alba DNA/RNA-binding protein	[more]
AT1G76010.1	9.3e-40	62.69	Alba DNA/RNA-binding protein	[more]
AT1G20220.1	1.1e-37	54.78	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 19..80 e-value: 8.0E-17 score: 60.8
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 14..117 e-value: 4.0E-33 score: 115.3
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 16..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..160
None	No IPR available	PANTHER	PTHR13516	RIBONUCLEASE P SUBUNIT P25	coord: 1..192
None	No IPR available	PANTHER	PTHR13516:SF3	ALBA DNA/RNA-BINDING PROTEIN	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G01750.2	Clc07G01750.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding