Clc07G01060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G01060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	ClcChr07: 1132619 .. 1135699 (+)
RNA-Seq Expression	Clc07G01060
Synteny	Clc07G01060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTGAAGGAACAGTAAAAGTTGATACAGTAATTAATCTCATATGTTTTTTTTGCCAAAGGGAGAGAGTGAGTGTTAGTAGTATTACACCTATGAAAGACAGAGACAGGAAAGAGTATCTTATGATGTTTAGAATCCAGGGCAAAATTGTCCACCCAAAAAAAAAAAAAAAGAAAATTCTTGTAAACAATCAACTCCTACAGAAAGAAAGGTTGCTAAATCTAACCTCTTCTTGTCTCCAAAAACTCAACTCACTGTGCACTTCTTCCCCACAAAAACACACCAATTTCAGAATTTCAATTCTCTCTCTCTTTCTCTCACTCAACTACAGTTTTGGATGAGAAGGGAATAGAAAAACAATCCCATCAACCAGGAAAAAACTTGGTTGTTCTACCTTTTTTAGAAAACCCCAAACCAATATCCTTTCAACTTCATAAATCCACAACAAAATCTCTCCTTTTCCCCTTCTACATTAATTAAAAAAAAAAAAAAAAAATTAAAAATCCAAGTCTCAAACAAAATCCTACCACCAGAGAGAAAGTCCAAGAAAGATAACAGCCTTCTTGTGTAGTCTTCTCAGATCTTGTTCCCTATCTCATCGAAAATCCATCTTTTGATTTACCCACTTTTTTTCTTTTCCTTGTTGGTTACAATCCCAATATCACAGGCTTATAAGAAGGAGGGAAAAAAAAAATTGGAAGAAAAGAAGAAGAAACCCTAGAAGAATCTTTGAGGTGAGATTTTTATGGCAAAAACCTAAGATGTGATGAGAAATAAACTTAATTGTTACATCAATTTTGCCATTATTATCATAATATTGGTAAAACAATTGGGATTTTACTTTCTTTTTTTTTTTTTTTTTTCCTCCCTTTTCTTCTCTTGAATTCTTGAAAATCAAACACAAAATATCTTGAGAGAATTCCTTTTGTTTGTTGAAATATTAGCAGCAAGCAACAGTCTTCTCTTCAACAAACAAAACCAAAAAAGCAAAAAAGAAGAAATTAGGGATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGGTCAATATCTCAACAATCATCGCCCCCCGCTCGCCCTCTCGAGGTGCAGCGGAGCTCACGTCCTCGAATTTCTCAGGTAAATAATAAAACTGCCCTCTCCATCTCACCGTTAACGTAGCTAACATACTACTGTTAGTCAACTATGTAAATCTCGATGTCAAATTATGCAGCAATTGTCTTTCTTTAATTATGGCTGGGGTTGGACAGGTATCTAGATCAATTTGGAAAGACGAAAGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGGTACTACTTCATGATCATCATAAAATAAAATTAAAAAAAATAAAAACAAAGGAGCAAATTTTCGAAAAGAAAAGAAAATTCCCCAATTGGGTATTGCTGTAAACCTTTTCTAAAATCATGGGTTTTGTTTAAATCTTTTATTTTATATGCTTTTTTTTTTCCCCCTTTTTTACCTTGAATAAGTTAAGGGTTTTCACTCTCTCTACTTCTGCTAGGGTTTGGAAAATTTGAAGCATTTTTTTTCTTACTCTTTATTTTTGGCTTTGATGAATAATTTTTTCTGAAAAAGTTCCTAAGAAGACTGTGTAAAGGTGTAGATCTCTGCTTTTGATGCAAATACAAGCAGTGTTACTATTTATAAATTTGTACTCTCCAGTAATATTCAATGTAATGCTTAAACACCATGGTTTATATTTGCAACATTTCTCTTTCTTCCTTTCCCTTTTCATTTTTGTTTTAATCCAATTATTCTCTCTTGCTTATGTTTTTATTTCAATGACCATCAATTTGTTGTGTTGTTTTTAAGTCCACAAAGTTGCTGCAGATCCAGTTCACATGTTAAATTAGTACAAAAATATGCCTGATTTCACTGTCTTGATGGGAAAAAATCTTGCTGTGAGTTTCAAAGTTCTTATTTTTATTAAGCCCCTTTGATAAAATTCTTCTAACTTTCCCCTCCCCTTTCAAAGGCTCTTCTTTTTTCTCTCGAAAATTCGAACATTTAACTTTTTGGTCGAAAATATAAAGGTATATAGCTTTGTTTTGATAGTTTTTTTTAAGTTAATTAAGAATTAGAATTTGTTTATTGAAATGTAATATTGTCTGCCAGAACTTTCTTTGTGTCTATGTCATTAGTTTCTGTGCTCTGAAATTTTTAAGATAATGAATTAAAAATTAGAGAAATAAGAATGTGGTGGAAGAGAACTTTTGGGCAGTTGGTTTCTGTTGATGAGACAGTAGAGAAAAACAAAATAGAGTAACCAAGAAACTATGGTTTCGTTAGGGCTCATGTTGTTGTCCAATGAGTTATAAATATCCTCGTAGTATTTGAGGTTGTTTTTGTGTTGTGTGTCCATTGAAATTAGGTCAGAAACATGTTTTCAGTTGGATTAATTAGTCTTTTTATTACTTTTTCTAGTTTACTTTTTTAACAATGTAAGAATTTAGTGTGATGTAATAAATTGCAGGGTAAATGCAACTTGAGTGTGTAGTTATACTAGATATGACACATTCTTTCGAGACGGAAAGATTAAATATTTAAATCTCTACTACTTTTGATGGTGTTAGATAACTCTTAAAAAATAATAATCCATGAGATAATGAAACCATTTTTCTTTTTTTAGTATAATGAGGACAGAGATGAGGATCAAACTTTTGAACTCAAGAGATGGTATGTTGCTAATTAG

mRNA sequence

ATGTATCAGCAAGCAACAGTCTTCTCTTCAACAAACAAAACCAAAAAAGCAAAAAAGAAGAAATTAGGGATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGTTTACTTTTTTAACAATTATAATGAGGACAGAGATGAGGATCAAACTTTTGAACTCAAGAGATGGTATGTTGCTAATTAG

Coding sequence (CDS)

ATGTATCAGCAAGCAACAGTCTTCTCTTCAACAAACAAAACCAAAAAAGCAAAAAAGAAGAAATTAGGGATGGACTTCTCAAGTAGTAGCAGCCATAACATCATCGTCAACAACAATAACAACAGCATCAACCACCACCAACAAGCTGCAACAACCTCCTCTTCCAGCAGTAGATATGAGAATCAAAAGCGTCGTGATTGGAAAACTTTTGTGCACACGGTCATTTGCCCTTTCTACGGGTTGCCGAACCCTCCGGCACCGTGTCCGTGCCCTCTTCGGCAAGCGTGGGGGAGCCTCGATGCGTTGGTCGGACGGCTTCGAGCAGCTTTTGAAGAGAATGGTGGGAAACCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGATTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAAGCAAGAGGAATTAGCTATGAGAAGAAAAGAAAGCGCCCACCTTCTCAATTGCCTTTGACACAACAAACATCTCATGTTTACTTTTTTAACAATTATAATGAGGACAGAGATGAGGATCAAACTTTTGAACTCAAGAGATGGTATGTTGCTAATTAG

Protein sequence

MYQQATVFSSTNKTKKAKKKKLGMDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTFVHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHVYFFNNYNEDRDEDQTFELKRWYVAN

Homology

[Close]

BLAST of Clc07G01060 vs. NCBI nr
Match: XP_038888358.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038888359.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-64
Identity = 138/179 (77.09%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHH-QQAATTSSSSSRYENQKRRDWKTF------------ 83
           MDFSSSSSHNII+NNNNNSINHH QQAATTSSSSSRYENQKRRDWKTF            
Sbjct: 1   MDFSSSSSHNIIINNNNNSINHHQQQAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPLA 60

Query: 84  -----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 143
                                  VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR
Sbjct: 61  LSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLR 120

Query: 144 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP-SQLPLTQQTSH 166
           AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP SQLPLT  TSH
Sbjct: 121 AAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSSQLPLTHHTSH 179

[Close]

BLAST of Clc07G01060 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 6.8e-64
Identity = 134/177 (75.71%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFSS SSHNII+NNNNN+IN HQQ A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSSGSSHNIIINNNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTH 176

[Close]

BLAST of Clc07G01060 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 133/177 (75.14%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFSSSSSHNII+N+NNN+IN HQQ A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTH 176

[Close]

BLAST of Clc07G01060 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.6 bits (592), Expect = 2.7e-57
Identity = 123/171 (71.93%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFS SSS++II+NNNNN++N HQ +AT SSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSGSSSNSIIINNNNNAMN-HQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 160
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 170

[Close]

BLAST of Clc07G01060 vs. NCBI nr
Match: XP_022155631.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155633.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-56
Identity = 123/177 (69.49%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           M+FSSSS  N++ NNN      H Q A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MEFSSSSGSNMMNNNN------HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPH 171

[Close]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.8e-43
Identity = 98/195 (50.26%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 35  IVNNNNNSINHH---------QQAATTSSSSSRYENQKRRDWKTF--------------- 94
           I++NN++S+              +++ S++SSRYENQKRRDW TF               
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 95  --------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 154
                               VHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 155 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHVYFFN 186
           EENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  +S V    
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASHQ 201

[Close]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-42
Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 44  NHHQQAATTSSSSSRYENQKRRDWKTF--------------------------------- 103
           N +     T  SSSRYENQKRRDW TF                                 
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 104 --VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVR 162
             VH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

[Close]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-41
Identity = 99/173 (57.23%), Postives = 104/173 (60.12%), Query Frame = 0


Query: 37  NNNNNSINHHQQAATTSSSS------------SRYENQKRRDWKTF-------------- 96
           +N N  I       TTSSSS            SRYENQKRRDW TF              
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 97  ---------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 156
                                VHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 157 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLTQ 162
           FEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-41
Identity = 84/141 (59.57%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 50  ATTSSSSSRYENQKRRDWKTF-----------------------------------VHTV 109
           +++S S SRYE+QKRRDW TF                                   VHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 110 ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 156
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

[Close]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-41
Identity = 84/141 (59.57%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 50  ATTSSSSSRYENQKRRDWKTF-----------------------------------VHTV 109
           +++S S SRYE+QKRRDW TF                                   VHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 110 ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 156
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

[Close]

BLAST of Clc07G01060 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.3e-64
Identity = 134/177 (75.71%), Postives = 137/177 (77.40%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFSS SSHNII+NNNNN+IN HQQ A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSSGSSHNIIINNNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQT+H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTTH 176

[Close]

BLAST of Clc07G01060 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-64
Identity = 133/177 (75.14%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFSSSSSHNII+N+NNN+IN HQQ A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTH 176

[Close]

BLAST of Clc07G01060 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-64
Identity = 133/177 (75.14%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           MDFSSSSSHNII+N+NNN+IN HQQ A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MDFSSSSSHNIIINHNNNTIN-HQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPP+QLPLTQQT+H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPLTQQTTH 176

[Close]

BLAST of Clc07G01060 vs. ExPASy TrEMBL
Match: A0A6J1DS94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 GN=LOC111022718 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.5e-56
Identity = 123/177 (69.49%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 24  MDFSSSSSHNIIVNNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF------------- 83
           M+FSSSS  N++ NNN      H Q A TSSSSSRYENQKRRDWKTF             
Sbjct: 1   MEFSSSSGSNMMNNNN------HLQGAATSSSSSRYENQKRRDWKTFGQYLNNHRPPLAL 60

Query: 84  ----------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 143
                                 VH  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA
Sbjct: 61  SRCSGAHVLEFLRYLDQFGKTKVHAPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRA 120

Query: 144 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSH 166
           AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL QQT H
Sbjct: 121 AFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLPQQTPH 171

[Close]

BLAST of Clc07G01060 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.3e-56
Identity = 121/174 (69.54%), Postives = 129/174 (74.14%), Query Frame = 0


Query: 24  MDFSSSSSHNIIV---NNNNNSINHHQQAATTSSSSSRYENQKRRDWKTF---------- 83
           MDFS SSS++I++   NNNNN+  +HQ +AT SSSSSRYENQKRRDWKTF          
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 84  -------------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 143
                                    VHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 144 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 160
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174

[Close]

BLAST of Clc07G01060 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-44
Identity = 98/195 (50.26%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 35  IVNNNNNSINHH---------QQAATTSSSSSRYENQKRRDWKTF--------------- 94
           I++NN++S+              +++ S++SSRYENQKRRDW TF               
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 95  --------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAF 154
                               VHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 155 EENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPLTQQTSHVYFFN 186
           EENGGKPE NPFGARAVRLYLREVRD+QSKARG+SYEKK+++ P     T  +S V    
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASHQ 201

[Close]

BLAST of Clc07G01060 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-43
Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 44  NHHQQAATTSSSSSRYENQKRRDWKTF--------------------------------- 103
           N +     T  SSSRYENQKRRDW TF                                 
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 104 --VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVR 162
             VH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

[Close]

BLAST of Clc07G01060 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 99/173 (57.23%), Postives = 104/173 (60.12%), Query Frame = 0


Query: 37  NNNNNSINHHQQAATTSSSS------------SRYENQKRRDWKTF-------------- 96
           +N N  I       TTSSSS            SRYENQKRRDW TF              
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 97  ---------------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 156
                                VHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 157 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYE-KKRKRPPSQLPLTQ 162
           FEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP  Q
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQ 187

[Close]

BLAST of Clc07G01060 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 93/176 (52.84%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 37  NNNNNSINHHQQAATTSS-----SSSRYENQKRRDWKTF--------------------- 96
           N+NN + N      T SS     SSSRYENQKRRDW TF                     
Sbjct: 7   NHNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHV 66

Query: 97  --------------VHTVICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGK 156
                         VH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG 
Sbjct: 67  LDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGA 126

Query: 157 PEANPFGARAVRLYLREVRDLQSKARGISYEKKRKR----------PPSQLPLTQQ 163
           PE +PFG+R+VR++LREVRD Q+K+RG+SYEKKRKR          P SQ PL QQ
Sbjct: 127 PETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQ 182

[Close]

BLAST of Clc07G01060 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-36
Identity = 74/138 (53.62%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 54  SSSSRYENQKRRDWKTF-----------------------------------VHTVICPF 113
           ++ SRYE+QKRRDW TF                                   VH   CP+
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 114 YGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQ 156
           +G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

The following BLAST results are available for this feature:

BLAST of Clc07G01060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888358.1	1.4e-64	77.09	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888835...	[more]
XP_004152053.1	6.8e-64	75.71	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothe...	[more]
XP_008447415.1	2.0e-63	75.14	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
KAG7036313.1	2.7e-57	71.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022155631.1	5.2e-56	69.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Momordica charantia] >XP_022155...	[more]

BLAST of Clc07G01060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	6.8e-43	50.26	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q6NNI3	5.8e-42	58.82	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	1.7e-41	57.23	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	2.9e-41	59.57	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	2.9e-41	59.57	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]

BLAST of Clc07G01060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E1	3.3e-64	75.71	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	9.5e-64	75.14	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	9.5e-64	75.14	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DS94	2.5e-56	69.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ETL1	4.3e-56	69.54	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Clc07G01060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	4.9e-44	50.26	Protein of unknown function (DUF640)	[more]
AT5G28490.1	4.1e-43	58.82	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.2e-42	57.23	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.1e-40	52.84	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.4e-36	53.62	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 68..136 e-value: 2.9E-32 score: 111.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 68..150 score: 42.849339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 36..70 coord: 68..165
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 68..165 coord: 36..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G01060.2	Clc07G01060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus