Clc06G19170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G19170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein indeterminate-domain 16
Location	ClcChr06: 29416243 .. 29417396 (+)
RNA-Seq Expression	Clc06G19170
Synteny	Clc06G19170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATACAAGAGCCATCAGGCTGATGTTGGATGGTCATTGTATAAGAATGTAAACTCCACATCCACAATCATGGAAAAGAAAGGAGATGGGTAAATCGGTAATTTCATGAGCCAATTTGTTATATATATAGGTGAAAGTTTCTGCCATTTCATTCAGAGAGTCTGTTTCCATTGTACTCAGAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAAAAAAAAGAAGAAGAAAAAGAAAAATCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATATCGTTAATCATTATTTACCTCATTAATTACCCTTCCATTTTCCCATATTTTCTTCTACCCTTAATTATTAAGCGTTATATGCAGAGTTTCTTTTAATTAAGTCTCTGCCTTGGTCTGTCTTTTCTTTTTTTCAATTAATAATCTTTTAAATTAAGAAAAATAGAGAGAAAATATGGGTTAATTATTAGTCGGATCATCATCATCTTCATCAACAATCACACAATAAATAAATCAAAAGTATGGAGTTCAAATTCAATTTTGTTTTGGAAACTTGAATTTGGTGTCCTGGTTTCTTGTTTAGTAAATTAAGTTTGTATGATATTATAATATATATTAATAATCATATGCACGGTTTGTTTATGCC

mRNA sequence

AAAATACAAGAGCCATCAGGCTGATGTTGGATGGTCATTGTATAAGAATGTAAACTCCACATCCACAATCATGGAAAAGAAAGGAGATGGGTAAATCGGTAATTTCATGAGCCAATTTGTTATATATATAGGTGAAAGTTTCTGCCATTTCATTCAGAGAGTCTGTTTCCATTGTACTCAGAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAAAAAAAAGAAGAAGAAAAAGAAAAATCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATATCGTTAATCATTATTTACCTCATTAATTACCCTTCCATTTTCCCATATTTTCTTCTACCCTTAATTATTAAGCGTTATATGCAGAGTTTCTTTTAATTAAGTCTCTGCCTTGGTCTGTCTTTTCTTTTTTTCAATTAATAATCTTTTAAATTAAGAAAAATAGAGAGAAAATATGGGTTAATTATTAGTCGGATCATCATCATCTTCATCAACAATCACACAATAAATAAATCAAAAGTATGGAGTTCAAATTCAATTTTGTTTTGGAAACTTGAATTTGGTGTCCTGGTTTCTTGTTTAGTAAATTAAGTTTGTATGATATTATAATATATATTAATAATCATATGCACGGTTTGTTTATGCC

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Protein sequence

MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

Homology

[Close]

BLAST of Clc06G19170 vs. NCBI nr
Match: XP_008464429.1 (PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 6.0e-80
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Clc06G19170 vs. NCBI nr
Match: KAA0057771.1 (protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA+EKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Clc06G19170 vs. NCBI nr
Match: XP_038878928.1 (protein indeterminate-domain 16 [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-79
Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSD FEAAGPGSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDAFEAAGPGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RPA   AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA
Sbjct: 61  RPA---AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of Clc06G19170 vs. NCBI nr
Match: XP_004138047.1 (protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 4.9e-74
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEA   GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRP  A GAECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of Clc06G19170 vs. NCBI nr
Match: XP_022921773.1 (protein indeterminate-domain 16-like [Cucurbita moschata])

HSP 1 Score: 282.0 bits (720), Expect = 3.5e-72
Identity = 157/173 (90.75%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+E AGPGS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYE-AGPGSLDLQLSISVR 60

Query: 61  PIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP    AEC+FKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE
Sbjct: 61  PIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120

Query: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 169

[Close]

BLAST of Clc06G19170 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of Clc06G19170 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 107 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 166
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 167 RFR 170
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of Clc06G19170 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 28  RPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEA 87
           RPS+      + PF A+      L+L +S+   R  +A A    K E  +  E A+    
Sbjct: 212 RPSNQHSPAFAYPFNASSAPFESLELQLSIGMAR-TSAQARHNEKRETSLTKERAN---- 271

Query: 88  LKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKER 147
                         E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E 
Sbjct: 272 -------------EEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREE 331

Query: 148 ATRQMDSTCMEITCQSCRQRFR 170
           A +++++T MEITC SC+Q F+
Sbjct: 332 AIKRINATMMEITCHSCKQLFQ 335

[Close]

BLAST of Clc06G19170 vs. ExPASy TrEMBL
Match: A0A5D3BFD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00530 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Clc06G19170 vs. ExPASy TrEMBL
Match: A0A1S3CN02 (protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Clc06G19170 vs. ExPASy TrEMBL
Match: A0A5A7UWD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00540 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.5e-80
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPI 60
           MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPI
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAGSGGSVDLQLSISLRPI 60

Query: 61  RPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELA 120
           RP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA+EKAYAERVRELTKREIELA
Sbjct: 61  RPVTAGGECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERVRELTKREIELA 120

Query: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 QTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of Clc06G19170 vs. ExPASy TrEMBL
Match: A0A0A0LRS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.4e-74
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEA   GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRP  A GAECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of Clc06G19170 vs. ExPASy TrEMBL
Match: A0A6J1E4S8 (protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC111429927 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 157/173 (90.75%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLR 60
           MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+E AGPGS+DLQLSIS+R
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPSASSMRFRSDPYE-AGPGSLDLQLSISVR 60

Query: 61  PIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120
           PIRP    AEC+FKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE
Sbjct: 61  PIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIE 120

Query: 121 LAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 172
           LAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 LAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 169

[Close]

BLAST of Clc06G19170 vs. TAIR 10
Match: AT3G48550.1 (BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 91/171 (53.22%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 2   EDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAG--PGSVDLQLSISLRP 61
           + +  KELQLLP+P S  + S     RP+  +    ++   ++      +DL+LSISL  
Sbjct: 4   QQDHHKELQLLPSPPS--TESPVRKHRPTVITTDHHNNHHRSSSMIHHDLDLKLSISLSS 63

Query: 62  IRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIEL 121
           I  A          EE+  P     VEALKWQAAEQIRLAA+EKAYAERVRELT+RE+E+
Sbjct: 64  ISTA----------EEL--PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELTRREMEM 123

Query: 122 AQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 171
           AQ+EFARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 AQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]

BLAST of Clc06G19170 vs. TAIR 10
Match: AT2G01940.1 (C2H2-like zinc finger protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of Clc06G19170 vs. TAIR 10
Match: AT2G01940.2 (C2H2-like zinc finger protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 246 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 305

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 306 KISSTIMQVTCQTCKGQFQ 324

[Close]

BLAST of Clc06G19170 vs. TAIR 10
Match: AT2G01940.3 (C2H2-like zinc finger protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 92  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 151
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 152 QMDSTCMEITCQSCRQRFR 170
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]

BLAST of Clc06G19170 vs. TAIR 10
Match: AT1G68130.1 (indeterminate(ID)-domain 14 )

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 107 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 166
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 167 RFR 170
            F+
Sbjct: 375 HFQ 377

The following BLAST results are available for this feature:

BLAST of Clc06G19170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464429.1	6.0e-80	96.49	PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein in...	[more]
KAA0057771.1	1.8e-79	95.91	protein indeterminate-domain 16 [Cucumis melo var. makuwa]	[more]
XP_038878928.1	2.3e-79	97.66	protein indeterminate-domain 16 [Benincasa hispida]	[more]
XP_004138047.1	4.9e-74	93.71	protein indeterminate-domain 16 [Cucumis sativus]	[more]
XP_022921773.1	3.5e-72	90.75	protein indeterminate-domain 16-like [Cucurbita moschata]	[more]

BLAST of Clc06G19170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IPE3	1.3e-08	41.77	Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5...	[more]
Q9C9X7	1.6e-06	44.44	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]
Q9FRH4	3.5e-06	31.69	Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV...	[more]

BLAST of Clc06G19170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFD1	2.9e-80	96.49	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CN02	2.9e-80	96.49	protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=...	[more]
A0A5A7UWD1	8.5e-80	95.91	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0LRS8	2.4e-74	93.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1	[more]
A0A6J1E4S8	1.7e-72	90.75	protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]

BLAST of Clc06G19170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48550.1	1.7e-32	53.22	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:...	[more]
AT2G01940.1	9.1e-10	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.2	9.1e-10	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.3	9.1e-10	41.77	C2H2-like zinc finger protein	[more]
AT1G68130.1	1.1e-07	44.44	indeterminate(ID)-domain 14	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..34
None	No IPR available	PANTHER	PTHR34946:SF2	OS03G0310200 PROTEIN	coord: 1..170
IPR039288	Zinc finger protein SHOOT GRAVITROPISM 5-like	PANTHER	PTHR34946	OS03G0310200 PROTEIN	coord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G19170.1	Clc06G19170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005634	nucleus