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Clc06G17000 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGTAATTAAGATGCTGTTTAACCGATTTATACTGTTTCTCATCATTAAGAAGGAACGATGTCCATAGGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGTCTTCTTACCACTATATCTTCTATTAGCATCATAAATATCTTTTATTCATAACAGGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTGTCTTTAAGCCACATCACAACTGGAAATTATGACATAAATGTCCTAATTTCATCTCTGGTAGAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAAGTAGGCACTGGGTTGCTTTGAGAAAGTTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCGTCAGAAATTCGAATCCCCACTATTGAAATCAATCCTAAATTTACTCCTGAAGTGTAGTTTTGAGCAGAGCCTGGGATGATATACAAATTCTGCTACATTAAACTTTCAAGGAACTCCAGAGATTTAAAAGATGGTCTTCTAAAAACTAATTCTCTTTCTCTCTAAACATATCCACATGTTATATTAACAATAGAAGACGCTAAAATAATAATGGAAGCTCCTAACTTGGGAAGAAAGTACAGGTAAGCCATAACAGGATGCAAGTTCCGAAAGAATAAAAGATTCTTCTTGAAGATATCATCCGCTAACAACGCTTAAGGATATCAGAGGAAAAAGGGACAAGAAAATACCTTTTCGTGTGTACAAGAACAAAAAAGAAAAAAAAAATGCGTTCAAAGCCTGAAAGTTAACATACCCCGAAAGTTTCTTCCATGATTTCGACATGGCAGAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACGTTAGTGGAAGAACTAGAATCACTCTCTCGATTAATTTCAGTATGTTCATTTTTATGGTAAGGAACCGAGTTAA ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAATTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACTATGTTCATTTTTATGGTAAGGAACCGAGTTAA ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAATTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACTATGTTCATTTTTATGGTAAGGAACCGAGTTAA MPYPRRRHSVGDIQFRDRFHLRRFIICHDLRIRTYRLTVSRFVAFFMYFDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSFRKERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGLVAFGKFNGLWYNLGTDLPAPHPLKDTDEVRQFLDHVISNNGEISILNHFNHSAASESSPASGPAFRNDEDYVHFYGKEPS Homology
BLAST of Clc06G17000 vs. NCBI nr
Match: XP_038902688.1 (josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein [Benincasa hispida]) HSP 1 Score: 170.2 bits (430), Expect = 1.8e-38 Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0
BLAST of Clc06G17000 vs. NCBI nr
Match: XP_016903134.1 (PREDICTED: josephin-like protein [Cucumis melo] >XP_016903135.1 PREDICTED: josephin-like protein [Cucumis melo] >KAA0061848.1 josephin-like protein [Cucumis melo var. makuwa] >TYK15408.1 josephin-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 155.6 bits (392), Expect = 4.5e-34 Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0
BLAST of Clc06G17000 vs. NCBI nr
Match: XP_022986948.1 (josephin-like protein [Cucurbita maxima]) HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33 Identity = 83/153 (54.25%), Postives = 95/153 (62.09%), Query Frame = 0
BLAST of Clc06G17000 vs. NCBI nr
Match: XP_022148354.1 (josephin-like protein [Momordica charantia] >XP_022148355.1 josephin-like protein [Momordica charantia] >XP_022148357.1 josephin-like protein [Momordica charantia] >XP_022148358.1 josephin-like protein [Momordica charantia]) HSP 1 Score: 152.1 bits (383), Expect = 5.0e-33 Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = 0
BLAST of Clc06G17000 vs. NCBI nr
Match: KAG6570667.1 (Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32 Identity = 81/153 (52.94%), Postives = 94/153 (61.44%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy Swiss-Prot
Match: O82391 (Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 2.5e-19 Identity = 61/145 (42.07%), Postives = 76/145 (52.41%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A1S4E4I3 (Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34 Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A5D3CVY1 (Ubiquitinyl hydrolase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00510 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34 Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1JI12 (Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34 Identity = 83/153 (54.25%), Postives = 95/153 (62.09%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1D2P2 (Ubiquitinyl hydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111017028 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 2.4e-33 Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = 0
BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1FYW5 (Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 3.5e-32 Identity = 80/153 (52.29%), Postives = 93/153 (60.78%), Query Frame = 0
BLAST of Clc06G17000 vs. TAIR 10
Match: AT2G29640.1 (JOSEPHIN-like protein ) HSP 1 Score: 97.1 bits (240), Expect = 1.8e-20 Identity = 61/145 (42.07%), Postives = 76/145 (52.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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