Clc06G17000 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G17000
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ubiquitinyl hydrolase 1
Location	ClcChr06: 27661351 .. 27662660 (+)
RNA-Seq Expression	Clc06G17000
Synteny	Clc06G17000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGTAATTAAGATGCTGTTTAACCGATTTATACTGTTTCTCATCATTAAGAAGGAACGATGTCCATAGGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGTCTTCTTACCACTATATCTTCTATTAGCATCATAAATATCTTTTATTCATAACAGGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTGTCTTTAAGCCACATCACAACTGGAAATTATGACATAAATGTCCTAATTTCATCTCTGGTAGAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAAGTAGGCACTGGGTTGCTTTGAGAAAGTTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCGTCAGAAATTCGAATCCCCACTATTGAAATCAATCCTAAATTTACTCCTGAAGTGTAGTTTTGAGCAGAGCCTGGGATGATATACAAATTCTGCTACATTAAACTTTCAAGGAACTCCAGAGATTTAAAAGATGGTCTTCTAAAAACTAATTCTCTTTCTCTCTAAACATATCCACATGTTATATTAACAATAGAAGACGCTAAAATAATAATGGAAGCTCCTAACTTGGGAAGAAAGTACAGGTAAGCCATAACAGGATGCAAGTTCCGAAAGAATAAAAGATTCTTCTTGAAGATATCATCCGCTAACAACGCTTAAGGATATCAGAGGAAAAAGGGACAAGAAAATACCTTTTCGTGTGTACAAGAACAAAAAAGAAAAAAAAAATGCGTTCAAAGCCTGAAAGTTAACATACCCCGAAAGTTTCTTCCATGATTTCGACATGGCAGAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACGTTAGTGGAAGAACTAGAATCACTCTCTCGATTAATTTCAGTATGTTCATTTTTATGGTAAGGAACCGAGTTAA

mRNA sequence

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAATTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACTATGTTCATTTTTATGGTAAGGAACCGAGTTAA

Coding sequence (CDS)

ATGCCCTATCCGCGGCGAAGGCACTCCGTCGGTGATATACAATTCCGAGATCGCTTCCATCTCCGAAGATTTATTATTTGCCATGATCTCAGAATTAGAACTTATCGTCTCACTGTTTCACGATTTGTTGCATTCTTTATGTATTTCGATGAAAAGGATGCATTTACTCGAGCAAACTTAAATGCAATTGCTGAAAAGCTGGTGCTCGACGAGCCAAACAAAGAACCTTGGACGTCATTATCATTTAGAAAGGAAAGAGTGGTGTGGCTTGACCATCGGAATGGAGCTTCTTCAATTGATTTGGATGGACCTGTGGATACCCATAAACTTATGGAATTGCACTTAACGTCTCAGTTAGAAGGTTTGGTGGCATTTGGAAAATTCAACGGATTATGGTATAATTTGGGCACTGATCTGCCTGCTCCTCATCCGCTAAAGGACACTGATGAAGTAAGACAATTTTTGGATCATGTGATCAGTAACAATGGAGAAATTAGCATTCTCAATCACTTCAATCATTCTGCTGCATCCGAATCCTCACCTGCCTCCGGCCCTGCTTTTAGAAATGACGAGGACTATGTTCATTTTTATGGTAAGGAACCGAGTTAA

Protein sequence

MPYPRRRHSVGDIQFRDRFHLRRFIICHDLRIRTYRLTVSRFVAFFMYFDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSFRKERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGLVAFGKFNGLWYNLGTDLPAPHPLKDTDEVRQFLDHVISNNGEISILNHFNHSAASESSPASGPAFRNDEDYVHFYGKEPS

Homology

[Close]

BLAST of Clc06G17000 vs. NCBI nr
Match: XP_038902688.1 (josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-38
Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F EKDAFTRANLNAIAEKLVLDEPN+E WT LSF                        + 
Sbjct: 27  FQEKDAFTRANLNAIAEKLVLDEPNEERWTPLSFVFKPHHNTVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGASSIDLDGP DTHKLM + L   +            VA  K NGLWYNL
Sbjct: 87  KIVVWHDHRNGASSIDLDGPEDTHKLMGIVLNVSVRRFGGIWKSRHWVALRKINGLWYNL 146

[Close]

BLAST of Clc06G17000 vs. NCBI nr
Match: XP_016903134.1 (PREDICTED: josephin-like protein [Cucumis melo] >XP_016903135.1 PREDICTED: josephin-like protein [Cucumis melo] >KAA0061848.1 josephin-like protein [Cucumis melo var. makuwa] >TYK15408.1 josephin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 4.5e-34
Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F EKDAFTRANLNAIAEKLV DEPN+E WT LS                         + 
Sbjct: 28  FQEKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKG 87

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGAS+IDLDGP DT KLM + L   +            VA  K +GLWYNL
Sbjct: 88  KSVVWHDHRNGASTIDLDGPDDTRKLMGIVLNVSVRRFGGIWKSRHWVALRKIDGLWYNL 147

[Close]

BLAST of Clc06G17000 vs. NCBI nr
Match: XP_022986948.1 (josephin-like protein [Cucurbita maxima])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33
Identity = 83/153 (54.25%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E +AFTRA+LNAIAEKLVLDEPNKEPWT LSF                        + 
Sbjct: 27  FQENNAFTRAHLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNSVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGASSIDLDGP  THKLM + L   +            VA  K N LWYNL
Sbjct: 87  KSVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINELWYNL 146

[Close]

BLAST of Clc06G17000 vs. NCBI nr
Match: XP_022148354.1 (josephin-like protein [Momordica charantia] >XP_022148355.1 josephin-like protein [Momordica charantia] >XP_022148357.1 josephin-like protein [Momordica charantia] >XP_022148358.1 josephin-like protein [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-33
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E DAFTRANLNAIAE LVL+EPNKEPWT LSF                        + 
Sbjct: 27  FQENDAFTRANLNAIAENLVLNEPNKEPWTPLSFVFKPHHNTVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW D RNGASSIDLDGP DTHKLM + L   +            +A  K NGLWYNL
Sbjct: 87  KSVVWHDRRNGASSIDLDGPEDTHKLMGIVLNVSVRRFGGIWKSRHWIALRKINGLWYNL 146

[Close]

BLAST of Clc06G17000 vs. NCBI nr
Match: KAG6570667.1 (Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32
Identity = 81/153 (52.94%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E DAFTRA+LNAI+EKLVLDEPN+EPWT LSF                        + 
Sbjct: 27  FQENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGASSIDLDGP  THKLM + L   +            VA  K N LWYNL
Sbjct: 87  KSVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINELWYNL 146

[Close]

BLAST of Clc06G17000 vs. ExPASy Swiss-Prot
Match: O82391 (Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-19
Identity = 61/145 (42.07%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F +KDAFT+ +LN+IAEKL  ++PNKE WT LSF                        + 
Sbjct: 27  FQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLE---GL------VAFGKFNGLWYNL 161
           + VVW D R GASSIDLD   D   LM + L   ++   GL      V   K NG+WYNL
Sbjct: 87  KSVVWHDKRIGASSIDLD---DADTLMGIVLNVPVKRYGGLWRSRHWVVVRKINGVWYNL 146

[Close]

BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A1S4E4I3 (Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F EKDAFTRANLNAIAEKLV DEPN+E WT LS                         + 
Sbjct: 28  FQEKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKG 87

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGAS+IDLDGP DT KLM + L   +            VA  K +GLWYNL
Sbjct: 88  KSVVWHDHRNGASTIDLDGPDDTRKLMGIVLNVSVRRFGGIWKSRHWVALRKIDGLWYNL 147

[Close]

BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A5D3CVY1 (Ubiquitinyl hydrolase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00510 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F EKDAFTRANLNAIAEKLV DEPN+E WT LS                         + 
Sbjct: 28  FQEKDAFTRANLNAIAEKLVRDEPNQETWTPLSIVFKPHHNTVTGNYDINVLISALEEKG 87

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGAS+IDLDGP DT KLM + L   +            VA  K +GLWYNL
Sbjct: 88  KSVVWHDHRNGASTIDLDGPDDTRKLMGIVLNVSVRRFGGIWKSRHWVALRKIDGLWYNL 147

[Close]

BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1JI12 (Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 83/153 (54.25%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E +AFTRA+LNAIAEKLVLDEPNKEPWT LSF                        + 
Sbjct: 27  FQENNAFTRAHLNAIAEKLVLDEPNKEPWTPLSFVFKPHHNSVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGASSIDLDGP  THKLM + L   +            VA  K N LWYNL
Sbjct: 87  KSVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINELWYNL 146

[Close]

BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1D2P2 (Ubiquitinyl hydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111017028 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.4e-33
Identity = 80/153 (52.29%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E DAFTRANLNAIAE LVL+EPNKEPWT LSF                        + 
Sbjct: 27  FQENDAFTRANLNAIAENLVLNEPNKEPWTPLSFVFKPHHNTVTGNYDINVLISALEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW D RNGASSIDLDGP DTHKLM + L   +            +A  K NGLWYNL
Sbjct: 87  KSVVWHDRRNGASSIDLDGPEDTHKLMGIVLNVSVRRFGGIWKSRHWIALRKINGLWYNL 146

[Close]

BLAST of Clc06G17000 vs. ExPASy TrEMBL
Match: A0A6J1FYW5 (Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-32
Identity = 80/153 (52.29%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F E DAFTRA+LNAI+EKLVLDEPN+EPWT LSF                        + 
Sbjct: 27  FQENDAFTRAHLNAISEKLVLDEPNREPWTPLSFVFKPHHNSVTGNYDINVLISAMEEKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLEGL---------VAFGKFNGLWYNL 168
           + VVW DHRNGASSIDLDGP  THKLM + L   +            VA  K N  WYNL
Sbjct: 87  KSVVWHDHRNGASSIDLDGPEATHKLMGIVLNVPVRRFGGIWKSRHWVALRKINESWYNL 146

[Close]

BLAST of Clc06G17000 vs. TAIR 10
Match: AT2G29640.1 (JOSEPHIN-like protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-20
Identity = 61/145 (42.07%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 49  FDEKDAFTRANLNAIAEKLVLDEPNKEPWTSLSF------------------------RK 108
           F +KDAFT+ +LN+IAEKL  ++PNKE WT LSF                        + 
Sbjct: 27  FQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITGNYDVNVMITALEGKG 86

Query: 109 ERVVWLDHRNGASSIDLDGPVDTHKLMELHLTSQLE---GL------VAFGKFNGLWYNL 161
           + VVW D R GASSIDLD   D   LM + L   ++   GL      V   K NG+WYNL
Sbjct: 87  KSVVWHDKRIGASSIDLD---DADTLMGIVLNVPVKRYGGLWRSRHWVVVRKINGVWYNL 146

The following BLAST results are available for this feature:

BLAST of Clc06G17000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902688.1	1.8e-38	58.82	josephin-like protein [Benincasa hispida] >XP_038902689.1 josephin-like protein ...	[more]
XP_016903134.1	4.5e-34	53.59	PREDICTED: josephin-like protein [Cucumis melo] >XP_016903135.1 PREDICTED: josep...	[more]
XP_022986948.1	1.0e-33	54.25	josephin-like protein [Cucurbita maxima]	[more]
XP_022148354.1	5.0e-33	52.29	josephin-like protein [Momordica charantia] >XP_022148355.1 josephin-like protei...	[more]
KAG6570667.1	1.5e-32	52.94	Josephin-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc06G17000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82391	2.5e-19	42.07	Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1	[more]

BLAST of Clc06G17000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4I3	2.2e-34	53.59	Ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103502098 PE=4 SV=1	[more]
A0A5D3CVY1	2.2e-34	53.59	Ubiquitinyl hydrolase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JI12	4.9e-34	54.25	Ubiquitinyl hydrolase 1 OS=Cucurbita maxima OX=3661 GN=LOC111484533 PE=4 SV=1	[more]
A0A6J1D2P2	2.4e-33	52.29	Ubiquitinyl hydrolase 1 OS=Momordica charantia OX=3673 GN=LOC111017028 PE=4 SV=1	[more]
A0A6J1FYW5	3.5e-32	52.29	Ubiquitinyl hydrolase 1 OS=Cucurbita moschata OX=3662 GN=LOC111449101 PE=4 SV=1	[more]

BLAST of Clc06G17000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29640.1	1.8e-20	42.07	JOSEPHIN-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040053	Josephin-1/2	PANTHER	PTHR13291	JOSEPHIN 1, 2	coord: 49..82
IPR040053	Josephin-1/2	PANTHER	PTHR13291	JOSEPHIN 1, 2	coord: 80..167
None	No IPR available	PANTHER	PTHR13291:SF0	JOSEPHIN-LIKE PROTEIN	coord: 49..82
None	No IPR available	PANTHER	PTHR13291:SF0	JOSEPHIN-LIKE PROTEIN	coord: 80..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G17000.2	Clc06G17000.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004843	thiol-dependent deubiquitinase