Clc06G16450 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G16450
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	suppressor of phytochrome b 5
Location	ClcChr06: 27200287 .. 27201390 (+)
RNA-Seq Expression	Clc06G16450
Synteny	Clc06G16450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCTCTAGTTTTGTAAGCCTGAGCCAATCCATCTCTCTGCATTTAAAGCTACCCTTTTCTAATTATGACAGAATTCAGAGAAGAGTTAAGATGATTATTGCCATCTTCTCTTAAGAAACCCAAATGACCAAATGAACCAACCCCATGTCCTTTCAAATTAGCATGTATATACCTTTTGCAATAACAACTATTTCTCTTTCATTGACACCTTCTAGCTGTCTTCTGCTCACTGAAAGTCAGAAAATTTATTTGCCTTTGGATTTCCAGGTGGTGCAGTGAGGGTTTTTATCTATCTACCCATTAAAAACTTGTTTTTCCTTTCAAAATTTGGGTTTTGTAGCTTTCATATTATTAGATAAGCCTGTTTGGATCAGAGAGGTAGCAAAATGGCATGAATGGTCTCTTCAGGTGTCTAAATTCAGCTTCCCCATTCAATAACTTTCCTTAATTCTGTTATTGATTCTTCTTCTTCTTGTTCTTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTACCTTAAACTCCTCAAATTTGCTTGTTCCTAGTTATGGAACCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGGTTCAAGTGATGCAGCTTCTGATGAAGATGAGGATGAAGATAAAGAACATAAAGGCTATTATTATGCAGCAAATAACCAAGATGACAGTGATGATTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGAACATCAATTTAAAGGGATGAAAAATCCTCATGGTGAAGTAAAGTCTTGCTTAGAAACAAAAACCAAGAAGCCATTAATGGAAAAGAAGAAGCAAAGAGCTGAGAAAAAAGAAGTCAAAGTGGGACAAAAGCCTAAGAGTTCAGTTCAAAGCAGTTCTAAGGTAAGAAAAAGCATCTTGATGGGTAAAAGAAACTAGCCAAGCTAGTTCTTCTTCTTCTTCTTCTTTGGGTATTTCATTTATGCTTTGCTGTAGGCTGAAAAAAAATGAACACTTGGAGAAAAAAAAAAATGAGCTGTTTCTTTTACAAGACAATATTTTGGTA

mRNA sequence

ATTCTCTCTAGTTTTGTAAGCCTGAGCCAATCCATCTCTCTGCATTTAAAGCTACCCTTTTCTAATTATGACAGAATTCAGAGAAGAGTTAAGATGATTATTGCCATCTTCTCTTAAGAAACCCAAATGACCAAATGAACCAACCCCATGTCCTTTCAAATTAGCATGTATATACCTTTTGCAATAACAACTATTTCTCTTTCATTGACACCTTCTAGCTGTCTTCTGCTCACTGAAAGTCAGAAAATTTATTTGCCTTTGGATTTCCAGGTGGTGCAGTGAGGGTTTTTATCTATCTACCCATTAAAAACTTGTTTTTCCTTTCAAAATTTGGGTTTTGTAGCTTTCATATTATTAGATAAGCCTGTTTGGATCAGAGAGGTAGCAAAATGGCATGAATGGTCTCTTCAGTTATGGAACCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGGTTCAAGTGATGCAGCTTCTGATGAAGATGAGGATGAAGATAAAGAACATAAAGGCTATTATTATGCAGCAAATAACCAAGATGACAGTGATGATTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGAACATCAATTTAAAGGGATGAAAAATCCTCATGGTGAAGTAAAGTCTTGCTTAGAAACAAAAACCAAGAAGCCATTAATGGAAAAGAAGAAGCAAAGAGCTGAGAAAAAAGAAGTCAAAGTGGGACAAAAGCCTAAGAGTTCAGTTCAAAGCAGTTCTAAGGTAAGAAAAAGCATCTTGATGGGTAAAAGAAACTAGCCAAGCTAGTTCTTCTTCTTCTTCTTCTTTGGGTATTTCATTTATGCTTTGCTGTAGGCTGAAAAAAAATGAACACTTGGAGAAAAAAAAAAATGAGCTGTTTCTTTTACAAGACAATATTTTGGTA

Coding sequence (CDS)

ATGGTCTCTTCAGTTATGGAACCTTCCCAAATTTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCTCCTGCTAATGGTTCAAGTGATGCAGCTTCTGATGAAGATGAGGATGAAGATAAAGAACATAAAGGCTATTATTATGCAGCAAATAACCAAGATGACAGTGATGATTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAGAACATCAATTTAAAGGGATGAAAAATCCTCATGGTGAAGTAAAGTCTTGCTTAGAAACAAAAACCAAGAAGCCATTAATGGAAAAGAAGAAGCAAAGAGCTGAGAAAAAAGAAGTCAAAGTGGGACAAAAGCCTAAGAGTTCAGTTCAAAGCAGTTCTAAGGTAAGAAAAAGCATCTTGATGGGTAAAAGAAACTAG

Protein sequence

MVSSVMEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDSDDSMASDASSGPSHQQEHQFKGMKNPHGEVKSCLETKTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN

Homology

[Close]

BLAST of Clc06G16450 vs. NCBI nr
Match: XP_038879181.1 (protein SOB FIVE-LIKE 3-like [Benincasa hispida])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 125/142 (88.03%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDS- 65
           MEPSQIFGVSEECHSSESGWTMYIGSP NGSSDAASD+DEDE  EHK YYYA NNQDDS 
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPVNGSSDAASDDDEDE--EHKSYYYATNNQDDSD 60

Query: 66  DDSMASDASSGPS-HQQEHQFKGMKNPHGEVKSCLETKTKKPLMEKKKQRAEKKEVKVGQ 125
           DDSMASDASSGP+ HQQ + FKGMK+P+GE+  CLETKTKKPLMEKKKQRAEKKEVKVGQ
Sbjct: 61  DDSMASDASSGPNHHQQGNSFKGMKSPNGEMNFCLETKTKKPLMEKKKQRAEKKEVKVGQ 120

Query: 126 KPKSSVQSSSKVRKSILMGKRN 146
           KPKSSVQSSSKVRKSILMGKRN
Sbjct: 121 KPKSSVQSSSKVRKSILMGKRN 140

[Close]

BLAST of Clc06G16450 vs. NCBI nr
Match: XP_031737107.1 (uncharacterized protein LOC105434528 [Cucumis sativus] >KAE8652445.1 hypothetical protein Csa_014063 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-41
Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDS- 65
           MEPSQIFGVSEECHSSESGWTMYIGSPAN  S  A+ +D+DED+EHKGYYYAANN +DS 
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60

Query: 66  DDSMASDASSGPSHQQ--EHQFKGMKNPHGEVKSCLET--KTKKPLME-KKKQRAEKKEV 125
           DDSMASDASSGP HQ+   + FKGMKNP+GE+  CLET    +KPLME KKKQRAE+KEV
Sbjct: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120

Query: 126 KVGQKPKSSVQSSSKVRK 138
           +VGQKPK+SVQSSSK  K
Sbjct: 121 QVGQKPKTSVQSSSKAEK 138

[Close]

BLAST of Clc06G16450 vs. NCBI nr
Match: XP_022135291.1 (uncharacterized protein LOC111007289 isoform X1 [Momordica charantia])

HSP 1 Score: 168.3 bits (425), Expect = 4.8e-38
Identity = 112/163 (68.71%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASD--------EDEDEDKEHKGYYYA 65
           MEPSQIFGV+EECHSSESGWTMYIGSPA GSSDA +D        EDEDED++  G    
Sbjct: 1   MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSGDDGEDEDEDEDCYG---- 60

Query: 66  ANNQDDSDDSMASDASSGPSHQQEHQFKG-----MKNPHG-----EVKSCLETKTKKPLM 125
            NNQD+SDDSMASDASSGPSHQ  H F G       NPHG     EVK C ETKTKKPLM
Sbjct: 61  -NNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLM 120

Query: 126 EKKKQRAEKKEVK-----VGQKPKSSVQSSSKVRKSILMGKRN 146
           E  KQRAE+KEVK     VGQKPK+SVQSSSKVRKSI MGK+N
Sbjct: 121 E--KQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN 156

[Close]

BLAST of Clc06G16450 vs. NCBI nr
Match: XP_022987931.1 (uncharacterized protein LOC111485335 isoform X2 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 116/166 (69.88%), Postives = 123/166 (74.10%), Query Frame = 0


Query: 1   MVSSVMEPSQIFGVSEECHSSESGWTMYIGSP--ANGSSD----AASDEDEDEDKEHKGY 60
           MVSSVMEPSQ+FGVSEECHSSESGWTMYIGSP  A+GSSD    AASDE   ED+EHKGY
Sbjct: 1   MVSSVMEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDE---EDEEHKGY 60

Query: 61  YYAANNQDDSDDSMASDASSGPSHQQ-EHQFKGMKNP----------HGEVKSCLET--- 120
           Y    NQDDSDDSMASDASSGPSHQQ  H F GMKNP            +  SCLET   
Sbjct: 61  YDI--NQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPK 120

Query: 121 -KTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN 146
            K KKPL  KKKQRAE+KEVK   +PKSSVQSSSK RKSI MGKR+
Sbjct: 121 PKPKKPL--KKKQRAERKEVK---EPKSSVQSSSKARKSIWMGKRS 156

[Close]

BLAST of Clc06G16450 vs. NCBI nr
Match: XP_022921474.1 (uncharacterized protein LOC111429737 isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 116/168 (69.05%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 1   MVSSVMEPSQIFGVSEECHSSESGWTMYIGSP--ANGSSD----AASDEDEDEDKEHKGY 60
           MVSSVMEPSQ+FGVSEECHSSESGWTMYIGSP  A+GSSD    AASDE+EDE  EHKGY
Sbjct: 1   MVSSVMEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDE--EHKGY 60

Query: 61  YYAANNQDDSDDSMASDASSGPSHQQ-EHQFKGMKNP----------HGEVKSCLET--- 120
           Y    NQDDSDDSMASDASSGPSHQQ  H F GMKNP            +  SC ET   
Sbjct: 61  YDI--NQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPK 120

Query: 121 ---KTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN 146
              K KKPL  KKKQRAE+KEVK   +PKSSVQSSSK RK I MGKRN
Sbjct: 121 PKPKPKKPL--KKKQRAERKEVK---EPKSSVQSSSKARKCIWMGKRN 159

[Close]

BLAST of Clc06G16450 vs. ExPASy Swiss-Prot
Match: Q9FKQ9 (Protein SOB FIVE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SOFL4 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-07
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 16 EECHSSESGWTMYIGSPANGSSDAASDEDE--DEDKEHKGY---------YYAANNQDDS 75
          EEC SSESGWT Y+ SP         DEDE  DED  ++GY          +      DS
Sbjct: 4  EECSSSESGWTTYLSSPIK------VDEDEVVDEDYYYEGYNIYNYSSKVEHEEERNKDS 63

Query: 76 DDSMASDASSGPSHQQEHQ 84
          DDSMASDASSGP++Q+ HQ
Sbjct: 64 DDSMASDASSGPNYQRFHQ 76

[Close]

BLAST of Clc06G16450 vs. ExPASy Swiss-Prot
Match: Q9LEZ1 (Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.6e-04
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDSD 65
           ME + IFG  E+C S ESGWTMY+ S ++   D     D+DE++E            D  
Sbjct: 1   MESANIFGSDEDCRSCESGWTMYLASQSHDRDDDCYYGDDDEEEE----------DSDGG 60

Query: 66  DSMASDASSGPSHQQEHQFKGMKNPHGEVKSCLETKTKKPLMEKKKQRAEK 117
           DSM SDASSGP     +           +K   E + +  + +KKK+  E+
Sbjct: 61  DSMDSDASSGPMEATSY-----------LKLAQEIEEQNSIKKKKKKTNEE 90

[Close]

BLAST of Clc06G16450 vs. ExPASy TrEMBL
Match: A0A0A0LUQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.8e-46
Identity = 113/146 (77.40%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDS- 65
           MEPSQIFGVSEECHSSESGWTMYIGSPAN  S  A+ +D+DED+EHKGYYYAANN +DS 
Sbjct: 1   MEPSQIFGVSEECHSSESGWTMYIGSPANDDSSDAASDDDDEDEEHKGYYYAANNHNDSD 60

Query: 66  DDSMASDASSGPSHQQ--EHQFKGMKNPHGEVKSCLET--KTKKPLME-KKKQRAEKKEV 125
           DDSMASDASSGP HQ+   + FKGMKNP+GE+  CLET    +KPLME KKKQRAE+KEV
Sbjct: 61  DDSMASDASSGPCHQKGNHNPFKGMKNPNGEMNFCLETTRTVRKPLMEKKKKQRAERKEV 120

Query: 126 KVGQKPKSSVQSSSKVRKSILMGKRN 146
           +VGQKPK+SVQSSSKVRKSILM KRN
Sbjct: 121 QVGQKPKTSVQSSSKVRKSILMSKRN 146

[Close]

BLAST of Clc06G16450 vs. ExPASy TrEMBL
Match: A0A6J1C092 (uncharacterized protein LOC111007289 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007289 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.3e-38
Identity = 112/163 (68.71%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASD--------EDEDEDKEHKGYYYA 65
           MEPSQIFGV+EECHSSESGWTMYIGSPA GSSDA +D        EDEDED++  G    
Sbjct: 1   MEPSQIFGVAEECHSSESGWTMYIGSPAGGSSDADADAAPSGDDGEDEDEDEDCYG---- 60

Query: 66  ANNQDDSDDSMASDASSGPSHQQEHQFKG-----MKNPHG-----EVKSCLETKTKKPLM 125
            NNQD+SDDSMASDASSGPSHQ  H F G       NPHG     EVK C ETKTKKPLM
Sbjct: 61  -NNQDESDDSMASDASSGPSHQVGHPFGGNGRVKNPNPHGLKQQSEVKFCFETKTKKPLM 120

Query: 126 EKKKQRAEKKEVK-----VGQKPKSSVQSSSKVRKSILMGKRN 146
           E  KQRAE+KEVK     VGQKPK+SVQSSSKVRKSI MGK+N
Sbjct: 121 E--KQRAERKEVKEKLVLVGQKPKTSVQSSSKVRKSIWMGKKN 156

[Close]

BLAST of Clc06G16450 vs. ExPASy TrEMBL
Match: A0A6J1JFR5 (uncharacterized protein LOC111485335 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485335 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.5e-37
Identity = 116/166 (69.88%), Postives = 123/166 (74.10%), Query Frame = 0


Query: 1   MVSSVMEPSQIFGVSEECHSSESGWTMYIGSP--ANGSSD----AASDEDEDEDKEHKGY 60
           MVSSVMEPSQ+FGVSEECHSSESGWTMYIGSP  A+GSSD    AASDE   ED+EHKGY
Sbjct: 1   MVSSVMEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDE---EDEEHKGY 60

Query: 61  YYAANNQDDSDDSMASDASSGPSHQQ-EHQFKGMKNP----------HGEVKSCLET--- 120
           Y    NQDDSDDSMASDASSGPSHQQ  H F GMKNP            +  SCLET   
Sbjct: 61  YDI--NQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPK 120

Query: 121 -KTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN 146
            K KKPL  KKKQRAE+KEVK   +PKSSVQSSSK RKSI MGKR+
Sbjct: 121 PKPKKPL--KKKQRAERKEVK---EPKSSVQSSSKARKSIWMGKRS 156

[Close]

BLAST of Clc06G16450 vs. ExPASy TrEMBL
Match: A0A6J1E0K6 (uncharacterized protein LOC111429737 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111429737 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.8e-37
Identity = 116/168 (69.05%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 1   MVSSVMEPSQIFGVSEECHSSESGWTMYIGSP--ANGSSD----AASDEDEDEDKEHKGY 60
           MVSSVMEPSQ+FGVSEECHSSESGWTMYIGSP  A+GSSD    AASDE+EDE  EHKGY
Sbjct: 1   MVSSVMEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDE--EHKGY 60

Query: 61  YYAANNQDDSDDSMASDASSGPSHQQ-EHQFKGMKNP----------HGEVKSCLET--- 120
           Y    NQDDSDDSMASDASSGPSHQQ  H F GMKNP            +  SC ET   
Sbjct: 61  YDI--NQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPK 120

Query: 121 ---KTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN 146
              K KKPL  KKKQRAE+KEVK   +PKSSVQSSSK RK I MGKRN
Sbjct: 121 PKPKPKKPL--KKKQRAERKEVK---EPKSSVQSSSKARKCIWMGKRN 159

[Close]

BLAST of Clc06G16450 vs. ExPASy TrEMBL
Match: A0A6J1JKS2 (uncharacterized protein LOC111485335 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485335 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.1e-35
Identity = 112/165 (67.88%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 2   VSSVMEPSQIFGVSEECHSSESGWTMYIGSP--ANGSSD----AASDEDEDEDKEHKGYY 61
           + +VMEPSQ+FGVSEECHSSESGWTMYIGSP  A+GSSD    AASDE   ED+EHKGYY
Sbjct: 20  LGNVMEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDE---EDEEHKGYY 79

Query: 62  YAANNQDDSDDSMASDASSGPSHQQ-EHQFKGMKNP----------HGEVKSCLET---- 121
               NQDDSDDSMASDASSGPSHQQ  H F GMKNP            +  SCLET    
Sbjct: 80  DI--NQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKP 139

Query: 122 KTKKPLMEKKKQRAEKKEVKVGQKPKSSVQSSSKVRKSILMGKRN 146
           K KKPL  KKKQRAE+KEVK   +PKSSVQSSSK RKSI MGKR+
Sbjct: 140 KPKKPL--KKKQRAERKEVK---EPKSSVQSSSKARKSIWMGKRS 174

[Close]

BLAST of Clc06G16450 vs. TAIR 10
Match: AT5G38790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 16 EECHSSESGWTMYIGSPANGSSDAASDEDE--DEDKEHKGY---------YYAANNQDDS 75
          EEC SSESGWT Y+ SP         DEDE  DED  ++GY          +      DS
Sbjct: 4  EECSSSESGWTTYLSSPIK------VDEDEVVDEDYYYEGYNIYNYSSKVEHEEERNKDS 63

Query: 76 DDSMASDASSGPSHQQEHQ 84
          DDSMASDASSGP++Q+ HQ
Sbjct: 64 DDSMASDASSGPNYQRFHQ 76

[Close]

BLAST of Clc06G16450 vs. TAIR 10
Match: AT5G08150.1 (suppressor of phytochrome b 5 )

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-05
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 6   MEPSQIFGVSEECHSSESGWTMYIGSPANGSSDAASDEDEDEDKEHKGYYYAANNQDDSD 65
           ME + IFG  E+C S ESGWTMY+ S ++   D     D+DE++E            D  
Sbjct: 1   MESANIFGSDEDCRSCESGWTMYLASQSHDRDDDCYYGDDDEEEE----------DSDGG 60

Query: 66  DSMASDASSGPSHQQEHQFKGMKNPHGEVKSCLETKTKKPLMEKKKQRAEK 117
           DSM SDASSGP     +           +K   E + +  + +KKK+  E+
Sbjct: 61  DSMDSDASSGPMEATSY-----------LKLAQEIEEQNSIKKKKKKTNEE 90

[Close]

BLAST of Clc06G16450 vs. TAIR 10
Match: AT3G30580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38790.1); Has 75 Blast hits to 75 proteins in 16 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.4e-04
Identity = 45/125 (36.00%), Postives = 61/125 (48.80%), Query Frame = 0


Query: 16  EECHSSESGWTMYIGSPANGSSDAASDEDEDE----DKEHKGYYYAANNQDDSDDSMASD 75
           EEC SSESGWT YI S      +   DE   E    +K+ + Y        DSDDSMASD
Sbjct: 4   EECSSSESGWTTYISSRMEEEEEEVIDEVYYEGHIIEKDRRKYANEYEINKDSDDSMASD 63

Query: 76  ASSGPS-HQQEHQFK-----GMKNPHGEVKSC----LETKTKKPLMEKKKQRAEKKEVKV 127
           ASSGPS HQ  ++ K      ++N  GE        ++ K    L+ +KK++ + +    
Sbjct: 64  ASSGPSYHQTSNRGKRREGLALRNGKGESNDVYSHRIDDKNIGNLISRKKEKKKSENKSR 123

The following BLAST results are available for this feature:

BLAST of Clc06G16450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879181.1	1.4e-53	88.03	protein SOB FIVE-LIKE 3-like [Benincasa hispida]	[more]
XP_031737107.1	6.1e-41	75.36	uncharacterized protein LOC105434528 [Cucumis sativus] >KAE8652445.1 hypothetica...	[more]
XP_022135291.1	4.8e-38	68.71	uncharacterized protein LOC111007289 isoform X1 [Momordica charantia]	[more]
XP_022987931.1	1.6e-36	69.88	uncharacterized protein LOC111485335 isoform X2 [Cucurbita maxima]	[more]
XP_022921474.1	2.0e-36	69.05	uncharacterized protein LOC111429737 isoform X2 [Cucurbita moschata]	[more]

BLAST of Clc06G16450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKQ9	7.8e-07	49.37	Protein SOB FIVE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SOFL4 PE=2 SV=1	[more]
Q9LEZ1	3.6e-04	34.23	Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE...	[more]

BLAST of Clc06G16450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ4	6.8e-46	77.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014530 PE=3 SV=1	[more]
A0A6J1C092	2.3e-38	68.71	uncharacterized protein LOC111007289 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JFR5	7.5e-37	69.88	uncharacterized protein LOC111485335 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E0K6	9.8e-37	69.05	uncharacterized protein LOC111429737 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JKS2	4.1e-35	67.88	uncharacterized protein LOC111485335 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Clc06G16450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38790.1	5.6e-08	49.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G08150.1	2.6e-05	34.23	suppressor of phytochrome b 5	[more]
AT3G30580.1	6.4e-04	36.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..138
None	No IPR available	PANTHER	PTHR33347:SF31	OS08G0486700 PROTEIN	coord: 6..130
IPR044670	SOB-five-Like (SOFL) family	PANTHER	PTHR33347	OSJNBA0091C07.3 PROTEIN	coord: 6..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G16450.2	Clc06G16450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009691	cytokinin biosynthetic process
biological_process	GO:0009690	cytokinin metabolic process