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Clc06G16280 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGTGCGTTCTTTCAAACGTTTTCTTATTGCAATTTAAGGTCTTCAATTATGTTTCTTATTCTCTCGACTGCATTGAATCATTATGTAGCTTTCACATCCGCAACTCGAAGTACAAGGAAAGTGATTAAAATATATTGGTTTTCACATTGCACAAATGTAATTCCAACCTGTACTAATTAGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGGTGAGGAGAACTAATTTCTTACTTAAGGTTTGAACTCTCCACAAGCAAATTGATTAAACTTACCTGAATATTCAAACATGTAAGTCAATTATCCAGAATTGCAAATGTATAGTGATGAGGCTTAGTCTTCAAACACAGAAAATTTCTTTCTAGAAACCAAAAATTGAGCATACCATTTTTTTTATTTATTAAGAAACAGATTTTATTGATGTATAAAATTTACAAAAGACTTATTGGACTTACAAAATCGAGCATACCATTCAAAACCCTTAAACCTATTTTGTTTAGCCAGTTAGCTATAGCTAAAAGGCCTTTCCACCCATAATCCCAATTAAGTCATATCAAAGGCTCAAAACATAAGCACTTAAAATGAAGTATGCTTGTAAAACAATTTTAATAGTGAATTTTTCTAGCAACGCATCTGGCACCAAGTAATAGAGCTTCTTATTAGTTTTCGTTCCTTGAAACACTTCTATTATGTTCATCTTTGTTTGATTGTGAGATTGAAAGTTAATTGTAGCTTTTGTAGCTTCTTAGCTCTTGAACATTTGTTTGGTCTTGGAGATAAAACGAGGACATCTTGGTTCCTATCATGAACCCTCCATAGATCAAAAAGTGGGCCCCAAATATAATCTCTGTTAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGTAGCCCGCCTTTAAATCAACAATGTTGTTGAGACTCTATTACTGCACATGTCCAACTCTGTAAAGTTGATCTCTTTGAAAATGATGAATAAAAATATTTAAAAGAATGTAAACAGACAATATAAGAGCATCTTATATATTTTTTATGCTTAGCCAATCATATGATTGTTACACTTTTACATTCATACACTAAGGTTTATTTATTTTACTTTCCCATTAAAAATACCTTCAAAAGTAATTAACAAAAGCATGTTCTTAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGGAGTTTCAAATTTTGAAGGAAGGCAGGTGAAGATGAGCACAAAGTCAGAAAACAACACCAGGGTCCTGTCTGTTTTTAGGCTTTTGAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGGTATTTATCTGAATTAACAACAATTAATTATTATAATCATTCATCTATTCACATATAGCTTGTCAGTCTCCTAATTTGCTTTGGAGCTTTCTCCAACTACTTGAACTATAATATTGATCAACCCCAGCTCATCAACTTGGCAAGTTGTAGGTTTTCTAACCAATTTCCTCTCTCCCTCTCTCTCTTTTTTAGACATACCATAGGCCTTCCTTGTCAACATTTTCTTTTTTTTGAAATTTCCTCATATTTCTACTTCTAAATTACATTCTTCTATATGTGATATAAATGAAGCCACTAGAGACATTTGAAATTAGTGAACAGAATAATCCATGTTGGAAAAAGAAAAAAAAAAAACTGAGGTGTGGTAAATTTTGATGCAAATTCATTAATACAATCTAGATCTAAGTTCAGCTAAAATTTAAATTAAATTAATTAGATTGCATCCTTTTTCCTATTAATTCCTTCTTCAAAGCACTATCCGGACATGTTTACATTGACATTCTAAGTGCTTAATTACACTTTTTTTTTTCCACTTGAAAACACATTTCTATACATTTAGAAAGTCAATCCAAGCAAGCCTTATCCATTACAAAAATTTATCTTGATTAATTGATTATTAATAAATGATAAATTATCTGAAGAGAAACATAGGTTCATTGTTCTTATACTATCCAACAAAAGTAGCTGAAGGTTTTAAGGTAACTTCTTCAAGGTGTCAATCTGCAAGTACTTAGGTTGTCCTACACTCTAGACTTTTTTTCACTTGTCCAAATTAGCAAGTACAGAGTGAAGGGACCCATATTCCAAAAGTTAATGAGGCCTGGATGAAACTAGAATTTGCCAATGTATATTTTCTTGTGGTCATCCCTCTAAATCAAATACAACTTAATATAATCAGGAAGGTGATTAGCTCTTTAGCCAACAACAATAATCAGGTTACCTAATTTCATGAGTAACTTTGATCTCTTCAATGTCATTTTAAGAACTAGCTTCTGATCTCTTCATTCTCATTACAACAAATTTTTGTTTTTGTATAGTATCTTAGTACTCCTGGTAAAATATAAAAATATAGAAATGCATTCAAAGTTTTCAAATTTGTTTGGAATGAATTTTTCAAATGCTTAAAAATGTTTTTTTTTTTTTTTTTTTTTAAACATTTAAACACTCTTTTTAAACACTCGAAAACTCAATATAAATAGATCCTTTATCCAGTAGACATAACTAGAGACAGAGAGAGGGTCTCTAACATTTTAATATCTCAACAATATTCCTTTCCATTTTTTTTTTGTTAATAAAGAATGTAGAGATTATTTGGAAGCCAAGTTTTTTTTTTCTTTTTTCAAATATCATAGTCTATTTTTCTAAAAATAAGAAACTGTTCTTAAATATAAAAAGGAAAATATTGTCCTACTAAGGGCTTGTCCACCACTAAGCTTTTGGTATGTGTTTACCCTTTATGAAAAGAAAATGTATCTCTTCTCCTCTTTTCTCTCAATTTAATGGTGAGCATGATATTTCCTACTATTCAATATTATTAGGGGGCAAAAAAAAAAAAAACTTATTATTGTAAGAGGGAGTTTATAAAAACAATCTCAGAAAATAAAATAATAATAATAGTAATAACAAGACTACACTTTGTTATTTTCGTATGCTTTTTCTTTATTGTTTCTGAAATCAACTGTTCATACACTACCCATTAGCAATTTTTGTACGTACAATAATATTCCTGAATTGATATGTTTAATAAAAGTAGAATTAAAATGAATATACACAATAAAAAATTATCAAAATCATTTTAATCATAGGGCCAAAAATGCACATGATCTGATCCCAAACCAAGGGAAGGAACCTCCCAATAAGACAATAAATAAATCATTTACTTTTTAGTTGGAAGCTTTCTATAAATTCCTTTGCTGCTTATAATATGCAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA MDDINELILLGSGYWELAQMGYTFWRTFSCDRRPRAPSCLGGTPHNLPQNQGRLSLGDKVREQVKKAGGSFVWKLLELYPQVDAILLTPSCQPNLFLPLMAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQALGHSPKLCRLLQHAIMKNRSRLRSTADYEYHQQQISRNNELIDSVVEDTIFCSSTNLVENNNINNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK Homology
BLAST of Clc06G16280 vs. NCBI nr
Match: XP_038878811.1 (ethylene-responsive transcription factor ERN1-like [Benincasa hispida]) HSP 1 Score: 355.1 bits (910), Expect = 5.8e-94 Identity = 186/206 (90.29%), Postives = 189/206 (91.75%), Query Frame = 0
BLAST of Clc06G16280 vs. NCBI nr
Match: XP_031737158.1 (ethylene-responsive transcription factor ERN2 [Cucumis sativus]) HSP 1 Score: 297.4 bits (760), Expect = 1.4e-76 Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0
BLAST of Clc06G16280 vs. NCBI nr
Match: XP_016901366.1 (PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo] >KAA0058038.1 ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 295.4 bits (755), Expect = 5.5e-76 Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of Clc06G16280 vs. NCBI nr
Match: TYK11541.1 (ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 293.9 bits (751), Expect = 1.6e-75 Identity = 165/216 (76.39%), Postives = 176/216 (81.48%), Query Frame = 0
BLAST of Clc06G16280 vs. NCBI nr
Match: XP_022134768.1 (ethylene-responsive transcription factor 11-like [Momordica charantia]) HSP 1 Score: 234.2 bits (596), Expect = 1.5e-57 Identity = 143/201 (71.14%), Postives = 153/201 (76.12%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.7e-16 Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.3e-16 Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 5.1e-16 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2) HSP 1 Score: 83.6 bits (205), Expect = 4.3e-15 Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A9Y0K9 (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 9.5e-15 Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A0A0LPP4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015755 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 7.0e-77 Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A5A7USB5 (Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003430 PE=4 SV=1) HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76 Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A1S4DZE7 (ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494092 PE=4 SV=1) HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76 Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A5D3CI83 (Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37291G00010 PE=4 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 7.7e-76 Identity = 165/216 (76.39%), Postives = 176/216 (81.48%), Query Frame = 0
BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A6J1C2Y6 (ethylene-responsive transcription factor 11-like OS=Momordica charantia OX=3673 GN=LOC111006959 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 7.2e-58 Identity = 143/201 (71.14%), Postives = 153/201 (76.12%), Query Frame = 0
BLAST of Clc06G16280 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 ) HSP 1 Score: 86.7 bits (213), Expect = 3.6e-17 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
BLAST of Clc06G16280 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 ) HSP 1 Score: 79.0 bits (193), Expect = 7.5e-15 Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of Clc06G16280 vs. TAIR 10
Match: AT4G23750.2 (cytokinin response factor 2 ) HSP 1 Score: 79.0 bits (193), Expect = 7.5e-15 Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0
BLAST of Clc06G16280 vs. TAIR 10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 9.8e-15 Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of Clc06G16280 vs. TAIR 10
Match: AT5G53290.1 (cytokinin response factor 3 ) HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14 Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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