Clc06G16280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G16280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ethylene-responsive transcription factor
Location	ClcChr06: 27101037 .. 27105048 (-)
RNA-Seq Expression	Clc06G16280
Synteny	Clc06G16280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGTGCGTTCTTTCAAACGTTTTCTTATTGCAATTTAAGGTCTTCAATTATGTTTCTTATTCTCTCGACTGCATTGAATCATTATGTAGCTTTCACATCCGCAACTCGAAGTACAAGGAAAGTGATTAAAATATATTGGTTTTCACATTGCACAAATGTAATTCCAACCTGTACTAATTAGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGGTGAGGAGAACTAATTTCTTACTTAAGGTTTGAACTCTCCACAAGCAAATTGATTAAACTTACCTGAATATTCAAACATGTAAGTCAATTATCCAGAATTGCAAATGTATAGTGATGAGGCTTAGTCTTCAAACACAGAAAATTTCTTTCTAGAAACCAAAAATTGAGCATACCATTTTTTTTATTTATTAAGAAACAGATTTTATTGATGTATAAAATTTACAAAAGACTTATTGGACTTACAAAATCGAGCATACCATTCAAAACCCTTAAACCTATTTTGTTTAGCCAGTTAGCTATAGCTAAAAGGCCTTTCCACCCATAATCCCAATTAAGTCATATCAAAGGCTCAAAACATAAGCACTTAAAATGAAGTATGCTTGTAAAACAATTTTAATAGTGAATTTTTCTAGCAACGCATCTGGCACCAAGTAATAGAGCTTCTTATTAGTTTTCGTTCCTTGAAACACTTCTATTATGTTCATCTTTGTTTGATTGTGAGATTGAAAGTTAATTGTAGCTTTTGTAGCTTCTTAGCTCTTGAACATTTGTTTGGTCTTGGAGATAAAACGAGGACATCTTGGTTCCTATCATGAACCCTCCATAGATCAAAAAGTGGGCCCCAAATATAATCTCTGTTAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGTAGCCCGCCTTTAAATCAACAATGTTGTTGAGACTCTATTACTGCACATGTCCAACTCTGTAAAGTTGATCTCTTTGAAAATGATGAATAAAAATATTTAAAAGAATGTAAACAGACAATATAAGAGCATCTTATATATTTTTTATGCTTAGCCAATCATATGATTGTTACACTTTTACATTCATACACTAAGGTTTATTTATTTTACTTTCCCATTAAAAATACCTTCAAAAGTAATTAACAAAAGCATGTTCTTAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGGAGTTTCAAATTTTGAAGGAAGGCAGGTGAAGATGAGCACAAAGTCAGAAAACAACACCAGGGTCCTGTCTGTTTTTAGGCTTTTGAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGGTATTTATCTGAATTAACAACAATTAATTATTATAATCATTCATCTATTCACATATAGCTTGTCAGTCTCCTAATTTGCTTTGGAGCTTTCTCCAACTACTTGAACTATAATATTGATCAACCCCAGCTCATCAACTTGGCAAGTTGTAGGTTTTCTAACCAATTTCCTCTCTCCCTCTCTCTCTTTTTTAGACATACCATAGGCCTTCCTTGTCAACATTTTCTTTTTTTTGAAATTTCCTCATATTTCTACTTCTAAATTACATTCTTCTATATGTGATATAAATGAAGCCACTAGAGACATTTGAAATTAGTGAACAGAATAATCCATGTTGGAAAAAGAAAAAAAAAAAACTGAGGTGTGGTAAATTTTGATGCAAATTCATTAATACAATCTAGATCTAAGTTCAGCTAAAATTTAAATTAAATTAATTAGATTGCATCCTTTTTCCTATTAATTCCTTCTTCAAAGCACTATCCGGACATGTTTACATTGACATTCTAAGTGCTTAATTACACTTTTTTTTTTCCACTTGAAAACACATTTCTATACATTTAGAAAGTCAATCCAAGCAAGCCTTATCCATTACAAAAATTTATCTTGATTAATTGATTATTAATAAATGATAAATTATCTGAAGAGAAACATAGGTTCATTGTTCTTATACTATCCAACAAAAGTAGCTGAAGGTTTTAAGGTAACTTCTTCAAGGTGTCAATCTGCAAGTACTTAGGTTGTCCTACACTCTAGACTTTTTTTCACTTGTCCAAATTAGCAAGTACAGAGTGAAGGGACCCATATTCCAAAAGTTAATGAGGCCTGGATGAAACTAGAATTTGCCAATGTATATTTTCTTGTGGTCATCCCTCTAAATCAAATACAACTTAATATAATCAGGAAGGTGATTAGCTCTTTAGCCAACAACAATAATCAGGTTACCTAATTTCATGAGTAACTTTGATCTCTTCAATGTCATTTTAAGAACTAGCTTCTGATCTCTTCATTCTCATTACAACAAATTTTTGTTTTTGTATAGTATCTTAGTACTCCTGGTAAAATATAAAAATATAGAAATGCATTCAAAGTTTTCAAATTTGTTTGGAATGAATTTTTCAAATGCTTAAAAATGTTTTTTTTTTTTTTTTTTTTTAAACATTTAAACACTCTTTTTAAACACTCGAAAACTCAATATAAATAGATCCTTTATCCAGTAGACATAACTAGAGACAGAGAGAGGGTCTCTAACATTTTAATATCTCAACAATATTCCTTTCCATTTTTTTTTTGTTAATAAAGAATGTAGAGATTATTTGGAAGCCAAGTTTTTTTTTTCTTTTTTCAAATATCATAGTCTATTTTTCTAAAAATAAGAAACTGTTCTTAAATATAAAAAGGAAAATATTGTCCTACTAAGGGCTTGTCCACCACTAAGCTTTTGGTATGTGTTTACCCTTTATGAAAAGAAAATGTATCTCTTCTCCTCTTTTCTCTCAATTTAATGGTGAGCATGATATTTCCTACTATTCAATATTATTAGGGGGCAAAAAAAAAAAAAACTTATTATTGTAAGAGGGAGTTTATAAAAACAATCTCAGAAAATAAAATAATAATAATAGTAATAACAAGACTACACTTTGTTATTTTCGTATGCTTTTTCTTTATTGTTTCTGAAATCAACTGTTCATACACTACCCATTAGCAATTTTTGTACGTACAATAATATTCCTGAATTGATATGTTTAATAAAAGTAGAATTAAAATGAATATACACAATAAAAAATTATCAAAATCATTTTAATCATAGGGCCAAAAATGCACATGATCTGATCCCAAACCAAGGGAAGGAACCTCCCAATAAGACAATAAATAAATCATTTACTTTTTAGTTGGAAGCTTTCTATAAATTCCTTTGCTGCTTATAATATGCAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA

mRNA sequence

ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA

Coding sequence (CDS)

ATGGATGATATAAACGAATTGATCCTCCTTGGCTCTGGATATTGGGAACTCGCACAAATGGGCTACACATTCTGGAGAACCTTTTCTTGTGATCGAAGACCAAGAGCTCCTTCCTGTCTGGGTGGGACGCCCCATAACCTACCACAGAATCAAGGGAGACTCTCACTAGGTGACAAAGTCAGAGAACAGGTAAAGAAAGCAGGTGGGAGTTTTGTTTGGAAGCTGTTGGAATTATACCCTCAAGTGGATGCTATTTTGCTGACACCTAGCTGCCAACCAAACCTTTTCCTTCCATTAATGGCTGCCACACAGAGCTCCAATCCTTCATCTCAGTCTCCAAATCCTCTGAATTCCAACACCAATAATCAAGAAGCCAACCATGGGAGAAGAAGGTTTCTTGGAGTGAGACAACGCCCTTCTGGAAGATGGGTTGCAGAGATCAAAGTCTCCTCGCAGAAGCTTAGGCTATGGCTTGGCACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCCGCAAAGACAAACTTCTCATATGATCATCATGATCATGGCTTCCTCAAATCTTCCTCCATTAATGAAGAACAAGCACTTGGACATAGTCCTAAACTCTGCCGTTTGCTTCAACATGCCATCATGAAGAACAGAAGCCGTTTGAGATCAACAGCTGATTATGAATATCATCAGCAGCAGATATCAAGAAATAATGAGTTGATTGATTCGGTTGTTGAAGATACTATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATATTAACAATAAAGGATGTGGGTGTGGATTCTCTTTTGGGGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTGAGAAGTGA

Protein sequence

MDDINELILLGSGYWELAQMGYTFWRTFSCDRRPRAPSCLGGTPHNLPQNQGRLSLGDKVREQVKKAGGSFVWKLLELYPQVDAILLTPSCQPNLFLPLMAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQALGHSPKLCRLLQHAIMKNRSRLRSTADYEYHQQQISRNNELIDSVVEDTIFCSSTNLVENNNINNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK

Homology

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BLAST of Clc06G16280 vs. NCBI nr
Match: XP_038878811.1 (ethylene-responsive transcription factor ERN1-like [Benincasa hispida])

HSP 1 Score: 355.1 bits (910), Expect = 5.8e-94
Identity = 186/206 (90.29%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 100 MAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 159
           MAATQSSNPSSQ PNPLNSN NNQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG
Sbjct: 1   MAATQSSNPSSQPPNPLNSNPNNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 60

Query: 160 TFNRAEDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCR 219
           TFNRAEDAAMAYDRAARLLRGRSAKTNF YD HDHGF  SS+INEEQ+    GHSPKLCR
Sbjct: 61  TFNRAEDAAMAYDRAARLLRGRSAKTNFPYDDHDHGFFNSSTINEEQSRSLFGHSPKLCR 120

Query: 220 LLQHAIMKNRSRLRSTADYEYHQQQISRNNELIDSVVEDTIFCSSTNLVENNNINNKGCG 279
           LLQHAIMKNRSRLRSTADY   QQQI+RNN LIDSVVEDTIFCSSTNLVEN N NNKGCG
Sbjct: 121 LLQHAIMKNRSRLRSTADY---QQQITRNNGLIDSVVEDTIFCSSTNLVENKNDNNKGCG 180

Query: 280 CGFSFGGSKVYTSVFVAPSFSSDVEK 303
           CGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 181 CGFSFGGSKVYTSVFVAPSFSSDVEK 203

[Close]

BLAST of Clc06G16280 vs. NCBI nr
Match: XP_031737158.1 (ethylene-responsive transcription factor ERN2 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-76
Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 122 NQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR 181
           NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR
Sbjct: 11  NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR 70

Query: 182 SAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHAIMKNRSRLRSTADYEYH 241
           SAKTNFSYD+H HGF  +S+IN+EQ      HSPKLCRLLQHA+MKNRSRL ST D++YH
Sbjct: 71  SAKTNFSYDYH-HGFF-NSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLISTTDHQYH 130

Query: 242 ------QQQISRNNELIDSVVEDTIFCSSTNLVE-NNNINNKGCGCGFSFGGSKVYTSVF 301
                 QQQISRNN  IDSVVEDTIFCSSTNLVE NNN +NKGCGCGFSFGGSKVYTSVF
Sbjct: 131 HRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGGSKVYTSVF 190

Query: 302 VAPSFSSDVEK 303
           VAPSFSSDV+K
Sbjct: 191 VAPSFSSDVQK 199

[Close]

BLAST of Clc06G16280 vs. NCBI nr
Match: XP_016901366.1 (PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo] >KAA0058038.1 ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 5.5e-76
Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 105 SSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 164
           ++N SSQ P        NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA
Sbjct: 2   ATNSSSQPP--------NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 61

Query: 165 EDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHA 224
           EDAA+AYDRAARLLRGRSAKTNFSYD +DHGF  +S+IN+EQ      HSPKLCRLLQHA
Sbjct: 62  EDAALAYDRAARLLRGRSAKTNFSYD-YDHGFF-NSTINQEQTPSLFEHSPKLCRLLQHA 121

Query: 225 IMKNRSRLRSTADYEY-----HQQQISRNNELIDSVVEDTIFCSSTNLVE------NNNI 284
           +MKNRSRL ST D++Y     HQQQISRNN  IDSVVEDTIFCSSTNLVE      NNN 
Sbjct: 122 LMKNRSRLISTTDHQYHHRRRHQQQISRNNGGIDSVVEDTIFCSSTNLVENDNNNNNNNN 181

Query: 285 NNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 303
           +NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 182 SNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 203

[Close]

BLAST of Clc06G16280 vs. NCBI nr
Match: TYK11541.1 (ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-75
Identity = 165/216 (76.39%), Postives = 176/216 (81.48%), Query Frame = 0


Query: 105 SSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 164
           ++N SSQ P        NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA
Sbjct: 2   ATNSSSQPP--------NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 61

Query: 165 EDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHA 224
           EDAA+AYDRAARLLRGRSAKTNFSYD +DHGF  +S+IN+EQ      HSPKLCRLLQHA
Sbjct: 62  EDAALAYDRAARLLRGRSAKTNFSYD-YDHGFF-NSTINQEQTPSLFEHSPKLCRLLQHA 121

Query: 225 IMKNRSRLRSTADYEY-----HQQQISRNNELIDSVVEDTIFCSSTNLVENNNIN----- 284
           +MKNRSRL ST D++Y     HQQQISRNN  IDSVVEDTIFCSSTNLVEN+N N     
Sbjct: 122 LMKNRSRLISTTDHQYHHRRRHQQQISRNNGGIDSVVEDTIFCSSTNLVENDNNNNNNNN 181

Query: 285 -----NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 303
                NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 182 NNSNSNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 207

[Close]

BLAST of Clc06G16280 vs. NCBI nr
Match: XP_022134768.1 (ethylene-responsive transcription factor 11-like [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-57
Identity = 143/201 (71.14%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 100 MAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 159
           MAATQSS  SS    P+         +HGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG
Sbjct: 1   MAATQSSK-SSPDQLPITE-------HHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 60

Query: 160 TFNRAEDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQALGHSPKLCRLLQ 219
           TF+RAEDAAMAYDRAARLLRG +AKTNF YDHH HG   +SS       GHSPKL RLLQ
Sbjct: 61  TFDRAEDAAMAYDRAARLLRGTNAKTNFPYDHHVHGSFSNSS----TIFGHSPKLYRLLQ 120

Query: 220 HAIMKNR-SRLRSTADYEYHQQQISRNNELIDSVVEDTIFCSSTNLVENNNINNKGCGCG 279
            AIMKNR SR RSTAD ++ QQQ SR+    DSVVEDTIFCSSTN   N++      GCG
Sbjct: 121 LAIMKNRNSRPRSTAD-DHLQQQPSRSIGFTDSVVEDTIFCSSTN---NHSSCENYRGCG 180

Query: 280 FSFGGSKVYTSVFVAPSFSSD 300
           FSFGGSKVYTSVFVAPSFSSD
Sbjct: 181 FSFGGSKVYTSVFVAPSFSSD 185

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BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 92  QPNLFLPLMAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSS 151
           QPNL     A T+      ++    NSNTN         +F+GVRQRPSGRWVAEIK ++
Sbjct: 7   QPNLQQHQKAGTKGGKFKGRN---RNSNTN---------KFVGVRQRPSGRWVAEIKDTT 66

Query: 152 QKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNF 188
           QK+R+WLGTF  AE+AA AYD AA LLRG + +TNF
Sbjct: 67  QKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 90

[Close]

BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-16
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 117 NSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAAR 176
           N N+NN        +F+GVRQRPSGRWVAEIK ++QK+R+WLGTF  AE+AA AYD AA 
Sbjct: 30  NRNSNN------TNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAAC 89

Query: 177 LLRGRSAKTNF 188
           LLRG + +TNF
Sbjct: 90  LLRGSNTRTNF 94

[Close]

BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-16
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 123 QEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRS 182
           +++   + +F+GVRQRPSG+WVAEIK ++QK+R+WLGTF  AE+AA AYD AA LLRG +
Sbjct: 13  EKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSN 72

Query: 183 AKTNFSYDHHDHGFL---------KSSSINEEQALGHSP 213
            +TNF+    ++  L         +  S+ ++Q   H P
Sbjct: 73  TRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKP 111

[Close]

BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-15
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 110 SQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAM 169
           S  P  +N      + +  R +F+GVRQRPSGR+VAEIK ++Q +R+WLGTF  AE+AA 
Sbjct: 11  SLRPKKVNKFKGRNKKSETRDKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAR 70

Query: 170 AYDRAARLLRGRSAKTNF----SYD 191
           AYD AA LLRG   +TNF    SYD
Sbjct: 71  AYDEAATLLRGSKTRTNFVTHVSYD 95

[Close]

BLAST of Clc06G16280 vs. ExPASy Swiss-Prot
Match: A9Y0K9 (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-15
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 119 NTNNQEANHG-------RRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 178
           N  + E  HG       R +F+GVRQR SG+W AEIK +S+ +R+WLGT+  AE+AA AY
Sbjct: 5   NQKSNENKHGEKLMMKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAY 64

Query: 179 DRAARLLRGRSAKTNFSYDH 192
           D AA LLRG + +TNFS  H
Sbjct: 65  DEAAFLLRGTNTRTNFSTTH 84

[Close]

BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A0A0LPP4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015755 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-77
Identity = 160/191 (83.77%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 122 NQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR 181
           NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR
Sbjct: 11  NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGR 70

Query: 182 SAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHAIMKNRSRLRSTADYEYH 241
           SAKTNFSYD+H HGF  +S+IN+EQ      HSPKLCRLLQHA+MKNRSRL ST D++YH
Sbjct: 71  SAKTNFSYDYH-HGFF-NSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLISTTDHQYH 130

Query: 242 ------QQQISRNNELIDSVVEDTIFCSSTNLVE-NNNINNKGCGCGFSFGGSKVYTSVF 301
                 QQQISRNN  IDSVVEDTIFCSSTNLVE NNN +NKGCGCGFSFGGSKVYTSVF
Sbjct: 131 HRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGGSKVYTSVF 190

Query: 302 VAPSFSSDVEK 303
           VAPSFSSDV+K
Sbjct: 191 VAPSFSSDVQK 199

[Close]

BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A5A7USB5 (Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003430 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 105 SSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 164
           ++N SSQ P        NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA
Sbjct: 2   ATNSSSQPP--------NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 61

Query: 165 EDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHA 224
           EDAA+AYDRAARLLRGRSAKTNFSYD +DHGF  +S+IN+EQ      HSPKLCRLLQHA
Sbjct: 62  EDAALAYDRAARLLRGRSAKTNFSYD-YDHGFF-NSTINQEQTPSLFEHSPKLCRLLQHA 121

Query: 225 IMKNRSRLRSTADYEY-----HQQQISRNNELIDSVVEDTIFCSSTNLVE------NNNI 284
           +MKNRSRL ST D++Y     HQQQISRNN  IDSVVEDTIFCSSTNLVE      NNN 
Sbjct: 122 LMKNRSRLISTTDHQYHHRRRHQQQISRNNGGIDSVVEDTIFCSSTNLVENDNNNNNNNN 181

Query: 285 NNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 303
           +NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 182 SNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 203

[Close]

BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A1S4DZE7 (ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494092 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 165/212 (77.83%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 105 SSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 164
           ++N SSQ P        NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA
Sbjct: 2   ATNSSSQPP--------NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 61

Query: 165 EDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHA 224
           EDAA+AYDRAARLLRGRSAKTNFSYD +DHGF  +S+IN+EQ      HSPKLCRLLQHA
Sbjct: 62  EDAALAYDRAARLLRGRSAKTNFSYD-YDHGFF-NSTINQEQTPSLFEHSPKLCRLLQHA 121

Query: 225 IMKNRSRLRSTADYEY-----HQQQISRNNELIDSVVEDTIFCSSTNLVE------NNNI 284
           +MKNRSRL ST D++Y     HQQQISRNN  IDSVVEDTIFCSSTNLVE      NNN 
Sbjct: 122 LMKNRSRLISTTDHQYHHRRRHQQQISRNNGGIDSVVEDTIFCSSTNLVENDNNNNNNNN 181

Query: 285 NNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 303
           +NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 182 SNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 203

[Close]

BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A5D3CI83 (Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37291G00010 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.7e-76
Identity = 165/216 (76.39%), Postives = 176/216 (81.48%), Query Frame = 0


Query: 105 SSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 164
           ++N SSQ P        NQE NHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA
Sbjct: 2   ATNSSSQPP--------NQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRA 61

Query: 165 EDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQA---LGHSPKLCRLLQHA 224
           EDAA+AYDRAARLLRGRSAKTNFSYD +DHGF  +S+IN+EQ      HSPKLCRLLQHA
Sbjct: 62  EDAALAYDRAARLLRGRSAKTNFSYD-YDHGFF-NSTINQEQTPSLFEHSPKLCRLLQHA 121

Query: 225 IMKNRSRLRSTADYEY-----HQQQISRNNELIDSVVEDTIFCSSTNLVENNNIN----- 284
           +MKNRSRL ST D++Y     HQQQISRNN  IDSVVEDTIFCSSTNLVEN+N N     
Sbjct: 122 LMKNRSRLISTTDHQYHHRRRHQQQISRNNGGIDSVVEDTIFCSSTNLVENDNNNNNNNN 181

Query: 285 -----NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 303
                NKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK
Sbjct: 182 NNSNSNKGCGCGFSFGGSKVYTSVFVAPSFSSDVEK 207

[Close]

BLAST of Clc06G16280 vs. ExPASy TrEMBL
Match: A0A6J1C2Y6 (ethylene-responsive transcription factor 11-like OS=Momordica charantia OX=3673 GN=LOC111006959 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 7.2e-58
Identity = 143/201 (71.14%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 100 MAATQSSNPSSQSPNPLNSNTNNQEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 159
           MAATQSS  SS    P+         +HGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG
Sbjct: 1   MAATQSSK-SSPDQLPITE-------HHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLG 60

Query: 160 TFNRAEDAAMAYDRAARLLRGRSAKTNFSYDHHDHGFLKSSSINEEQALGHSPKLCRLLQ 219
           TF+RAEDAAMAYDRAARLLRG +AKTNF YDHH HG   +SS       GHSPKL RLLQ
Sbjct: 61  TFDRAEDAAMAYDRAARLLRGTNAKTNFPYDHHVHGSFSNSS----TIFGHSPKLYRLLQ 120

Query: 220 HAIMKNR-SRLRSTADYEYHQQQISRNNELIDSVVEDTIFCSSTNLVENNNINNKGCGCG 279
            AIMKNR SR RSTAD ++ QQQ SR+    DSVVEDTIFCSSTN   N++      GCG
Sbjct: 121 LAIMKNRNSRPRSTAD-DHLQQQPSRSIGFTDSVVEDTIFCSSTN---NHSSCENYRGCG 180

Query: 280 FSFGGSKVYTSVFVAPSFSSD 300
           FSFGGSKVYTSVFVAPSFSSD
Sbjct: 181 FSFGGSKVYTSVFVAPSFSSD 185

[Close]

BLAST of Clc06G16280 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-17
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 123 QEANHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRS 182
           +++   + +F+GVRQRPSG+WVAEIK ++QK+R+WLGTF  AE+AA AYD AA LLRG +
Sbjct: 13  EKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSN 72

Query: 183 AKTNFSYDHHDHGFL---------KSSSINEEQALGHSP 213
            +TNF+    ++  L         +  S+ ++Q   H P
Sbjct: 73  TRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKP 111

[Close]

BLAST of Clc06G16280 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 79.0 bits (193), Expect = 7.5e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 128 GRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNF 187
           G ++F GVRQRP G+W AEI+   +++RLWLGT+N AE+AAM YD AA  LRG  A TNF
Sbjct: 118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Query: 188 S 189
           S
Sbjct: 178 S 178

[Close]

BLAST of Clc06G16280 vs. TAIR 10
Match: AT4G23750.2 (cytokinin response factor 2 )

HSP 1 Score: 79.0 bits (193), Expect = 7.5e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 128 GRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNF 187
           G ++F GVRQRP G+W AEI+   +++RLWLGT+N AE+AAM YD AA  LRG  A TNF
Sbjct: 118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Query: 188 S 189
           S
Sbjct: 178 S 178

[Close]

BLAST of Clc06G16280 vs. TAIR 10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 9.8e-15
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 131 RFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFSYD 190
           +++GVR+RP GR+ AEI+  + K R WLGTF+ AE+AA+AYDRAAR +RG +A+TNF Y 
Sbjct: 38  KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 191 HHDHGFLKSSSINEEQA 208
               G   +S ++ +++
Sbjct: 98  DMPRGSSVTSFVSPDES 114

[Close]

BLAST of Clc06G16280 vs. TAIR 10
Match: AT5G53290.1 (cytokinin response factor 3 )

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 82  VDAILLTPSCQ---PNLFLPLMAATQSSNPSSQSPNPLNSNTNNQEANHGR-RRFLGVRQ 141
           V+ I + PSC      + +       SS+  +QSP       NN+ +  G+ ++F GVRQ
Sbjct: 71  VNEITVEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVRQ 130

Query: 142 RPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFS 189
           RP G+W AEI+   Q+ R+WLGTF  AE+AA+ YD AA  LRG  A TNFS
Sbjct: 131 RPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFS 181

The following BLAST results are available for this feature:

BLAST of Clc06G16280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878811.1	5.8e-94	90.29	ethylene-responsive transcription factor ERN1-like [Benincasa hispida]	[more]
XP_031737158.1	1.4e-76	83.77	ethylene-responsive transcription factor ERN2 [Cucumis sativus]	[more]
XP_016901366.1	5.5e-76	77.83	PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1 [Cucu...	[more]
TYK11541.1	1.6e-75	76.39	ethylene-responsive transcription factor ERF087-like isoform X1 [Cucumis melo va...	[more]
XP_022134768.1	1.5e-57	71.14	ethylene-responsive transcription factor 11-like [Momordica charantia]	[more]

BLAST of Clc06G16280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A1X9PY88	1.7e-16	53.13	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
A2Q5W1	2.3e-16	61.97	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
Q6J9S1	5.1e-16	44.44	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]
A9Y0K8	4.3e-15	52.94	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
A9Y0K9	9.5e-15	52.50	Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of Clc06G16280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPP4	7.0e-77	83.77	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015755 PE=...	[more]
A0A5A7USB5	2.6e-76	77.83	Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo ...	[more]
A0A1S4DZE7	2.6e-76	77.83	ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo ...	[more]
A0A5D3CI83	7.7e-76	76.39	Ethylene-responsive transcription factor ERF087-like isoform X1 OS=Cucumis melo ...	[more]
A0A6J1C2Y6	7.2e-58	71.14	ethylene-responsive transcription factor 11-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of Clc06G16280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	3.6e-17	44.44	related to AP2 11	[more]
AT4G23750.1	7.5e-15	60.66	cytokinin response factor 2	[more]
AT4G23750.2	7.5e-15	60.66	cytokinin response factor 2	[more]
AT1G28160.1	9.8e-15	48.05	Integrase-type DNA-binding superfamily protein	[more]
AT5G53290.1	1.7e-14	43.24	cytokinin response factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 132..143 score: 52.42 coord: 154..170 score: 60.21
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 131..194 e-value: 5.5E-32 score: 122.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 134..180 e-value: 5.7E-10 score: 39.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 131..188 score: 18.597231
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 131..187 e-value: 5.80387E-28 score: 100.809
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 130..189 e-value: 5.5E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
None	No IPR available	PANTHER	PTHR31194:SF82	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE	coord: 119..300
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 119..300
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 132..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G16280.1	Clc06G16280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity