Clc06G16100 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G16100
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionperiodic tryptophan protein 1 homolog
LocationClcChr06: 26929474 .. 26934165 (+)
RNA-Seq ExpressionClc06G16100
SyntenyClc06G16100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTAGTAGTAAAAAAAGTAATAATAATAAGTTTTTTTAAAAGAAAAAAAAAAATCTCAGTTGGCTATGTAAGGGAAAGTGGGGCTCACATTTTGATATTCCAAATTTACCCTTCTCATATTTGAAGTTCCCAATCATTTCGCACCGTTTTAACTCAGCGGTTCGCCCTACCCGCCGGCGCCACCGCTACCGCCACTCTCTTTCTTTTATTTGTTCTCTTGTTTGGCTGCCATTATTGTGAACTCTGTGAGTTCAGTTTAAGAGGAAGTGATATCATCGGTTTCGTGGGTTCCTAAAAGGGGTTTGTAAGCCCCTTCCAGTCTTGGAAGATCCTCCCTCCAAGGAGTTTATTGATGAATTTCTCAAGATTAAGATTTTCTTGGAGGATTCCAGGTAGCCGAAAATTTTGATTCGTTCGTCTACTGTTTCGGCGATATTCTCTTCATTGATCACCGACCTTTATTTCAGGCGGATCAATTTAATCTTGTTTTTGGACGTTTTAATCTTCATCTTTACGGCTTTTTAGATTAGATTGAGTTGTATGAGAATATAATAATGATGAATATGACAATAAAAGAGACGACGAAGAAGAATACTTCCTACTAAAGCTCCATGTAGTATTTGGTCTTTTGAGAATTCGTAGAGCCCTTCCGTTTTGTCATACAGCACATGCGTACTGATATGTATATATTTGTTTTTTTGGCAATGTGGATCGTTTCCGTTATACTGACATGGAGAGTATAATACCTTAGTTGCATTCTCGGGGAATGTGTTTTATTTAATGATTTTGGACGCACAAATATGGTTTTGTTTCTGTGCATCTGTTAATTACATGTCTTCATATTATGCAAACTATGATTTGGTCTCTGCAGCATACGTAGTGATGATGAGGTAAATGAAGAAGATATGGATGTTGAAGACACCGGTGATGAAGAGATTGCCAATGCACTAGCTGTTGCACAAACACTTGGAAAATCTCCTGAGACCACAAAGTCAAAAACCAAATATGACGATCTCGCTGAAGGTTTGAAGGAACTCAGCATGGACCGTTATGATGATGAAGATGATGGTATTCTCATCTCCCCTCCCTCTGTTTAACTTCTGCTGTTACTCTTTTAGCTTTTTTTCATTGGGTGTATTACTGAGGCTATTCCTTATTCATCATTTAAAATAAAAAAATAATTCCAAAATGTATTGCGGACCTTTCAAACCTATGATTGAAAACTCGGTCCTCATTTTAAAATAGAGGACCAAATGCACGTGCTATATTATGAAAAACTTGTCCACTAAAAAGATAACTTCCCTAATAAATAAATGTGTATATAACATATGATACTTTAAGATGGACAAAGGTTCAATTTTTCTTTTTACTTGAAAGAAAGTATGGGGGAAAAGAAGAAGAATGGTGGAGGAATAGCAGAGAATGCAAGGAGAAAGCAAGGCCTGAAGTGGGAATATGAAAATTAGGATTAGCACATTTTAAAATCAATAAAGCAGGCCTACTGTTCAACCCCAATGGCTTAAGGCTTTATAGGAAGTCAAATGATCTCTTGTTCAAGGCGAGGACACAACCAAGGGGCAAAAAAACTGTTTAAGATAACCCTTTTAGAATTTTTATTTTAGTGGCAATTGATATGGCTATTTTTTATTCTTTTATTTAATAATAATTAATTATGTTTAATAATACTCATCACAAGATTCTAGGATTTGTATGATTTTCCTAATTAAAATTGAGGCTTATGCCTCACTTCTTCAGGAGGGAAAGCCTCCCTTCAGTCGTTTAAAGCATTGGTTCTATCCTTACAATAGAAGGAAGAATGATGTAGTTCTTTTATATTTTTATTCTATTAGGTTTTAATAATTAAGTTGGTTTAACCATCATGAGTTGGCCTAGTGGTAAAAAAGGAGATAGTCTCAATAAATGGCTAAGAGGTCATGTGTTTAATCCATGGTGGCCACTTACATAGGATTTAATATCCTACGATTTTCCTTGACACTTAAATGTTGTCCACCTACCTAGAAATTAATGAAAAAGGCCAAAGGCCTAGGACTTTGAGCCTTGGGGTTTCACGAAGGGGGGTGTGCCATTTTGCGAACCTGACCTTTTTAAGGCAAGGCGCTAGACCAACACCTTAATTACTTTGAGAAATACATACAACTTAAAAAACTCTTAACATGGGATACTCAAAAGGTACTTACTTACATGAGCCCCAAAGCCTTGCATAGTCATTGGTTGGAACACATCGACGGTGATTCCAATTTGTACCGTAGCTCTTCCATGAATACCTGGCCTTTTCAAGACGAGGCGCAAGACCTGCACCTTGAGCCTAGGCGCGCACCTGAGAGGGCTTTTTAAAACACTGGTCTTTTGTACTGATTAAATCTCTAGCATGGCATTTATAGGCCAAGGGAGTGGGCCAGTTCAGCTAAACAAATCTTGGATAAAATACCAGGGTCAAGCTTCGATTTCGAGAGTTCCATGCCTCCTATCCATGCTAAATACGCTAGAAAGAAGAAAGTAAGTCATGTGTGAGTGAGATAAGCAAATCTTGAGTAGATTGGAGGTAAAACCTCTAATAGCTTGGAGGTCTTTGTGATTTCCCCTCGCAATGTTCCTGTACAAGTTTTATCCTTTTCTATTGTCTTATATTCTTTTACTATATCAATGTTAACTTGGAAGAGTTTCATGAGGGTCTGTGAGCTTGTGAAAAGCATTTAAGCAATATAAAGGGACTCCTAGCTAACTAACATCTGCGACTTCTCAACTTGGTGCCAAATATGATGTTTTCTTGATTATATTTTACTTTCCAGGTTCAAGCCATAGCATGGAATCTGTTAGGTATCCACACCTGCAAACACGAACAATACCCAACAAGATACCAGGAAAGACAGGGTAATACGATATCCCTGTATTATATATTCACGAATAAGAAGAGGATTCCAGAGTTTCAACAAGAAGACACTAAACCAAAGGAAAATAACAAGCAAGATAACTTCCAGCAAATTACAGAGTGCTGGTTCTCTACTCCCTCTAGGCTTAACCCCAAAATATTCCCTGCCCCCAGCTAAAGACTCAAAACCCTACTTAACCCCCACGACCCTTGTACGGATGGTCCCCACAATTCTCCAAGTAACGAACCTCATGCTCTCCCTTCCTCCTGTGAATTCCCTTTCTTGCCCTCCTCTGGTATGTATGGTGAATTGGGGGCCTAACAGAATCATCATTCGTCACAAATTCTCCTTAGTGGATCTTCTGATCATTCAGTAGTTTTGGTAATACTAGATATTTTCTACTAAGTTATTTGCACTTTCTTGTGGGATTATAATGATGCTGTTTACTCCCCCCCCCCCCCCACCACCCCAACACACACACAAAGTTAATCTTCATGTTTAACTTCTAGTTTTATGATTTCTCATCATAGCTTGAATTTTCTGGTTTTGTGTTTTTATGTAATTCAGAAGCAAGAAACCCTTCCCATTCAGGTTACAAGTGGCTAGTTACAACAGATGTGGAGAGCTTGGCATGGGATCCACGTACAGAGCACATGTTTGTGGTGTGTATTCCTGCTTCTTGCACAGATCTGGTTTTGAAGATTATTTTTCCTGCCTTCACAACATAAGTCACTCAACATACGGGATGGTACAGTTAAAGGTTTTTACATCTGGAATGCCACCACAGAGACTAGTTCTGAATCAAAAGCAAGTTTTACTCTCCATGCGCATCAGAAAGTTGTGTGCTCTGTTTCTTACAATCCCTTGGCACCTAATGTACTTGTTTTTTTCTTCTGTTTCTTGCTCAACTTCTCCCCTCCTCTCCTCTCCCGTATGTTGCCAGCTTTGGCCGATTTCTAGCTTCTGTTTGTCTGTACTCTTCTCCAGCTACTTGCAACTGGATCTACTGACAAAGTGGTAAGCTATAATCCCTTTATATTGCTTAAATGCTTTTATTATTTAAAGAAAGGTATTTGTTTTGTTTGTCATTGACTCATTTTGTTTTTTGTTTTCTGTGTCACAGGTATTTGGTCCATTTCTCCTATACATAATATTTTGTTAAAAACTACTTTTTTTCTAGTTTTTAAAATTTGCCTAGGTTTTCAAAATGTTTGTGAAAAGTAAGTAACAAAACAAGAAATGTAGAAGTAAAAGTAGACACTATAAGCTTAATTTAAAAAAAAAAAAAACAGGAAGCTAAAAATAAAATGGTTATCAAATGGGAGCTTTGGTAATTTGTAAATGTTTATTGATAAATAAGTGGTTTTGCAGGTGTGGGATACATTATCTGATGCTGCAGTCTCTTGGAAGTTTGGAAAGTACGGGCAGCCGATATCTTAAATTGTGAATTGAGTGAGTTGTAACAAATATAGTTGAGAAATATTTGGTTGTGTTTGTGTAGTTAGTTTTGGGATCTTTTCTTGACAACTGGACTTTGTCCTTCAAATGCTGTTTGAGTTTGTGAATATTCAATTCCCTGCATTTTCTTGTGGCAGGTTGTTTGAAAAATTGCTGAGTACCGGGGCTCCAAATTTGTTTGTATTTGATGGTGAATGTCTATCATGGCGTCAAATTTAGAAATGTTTATTAAAAAATTAATGGACCCTTGGAGCTCTTGACTAATGCTCGGATTTCATTGCAGTTAGTTATACTGTAAAGAACGTTGGTGAAAATGAAAATTGGATTTCATATTCATAA

mRNA sequence

ATGGGTTCCCAATCATTTCGCACCGTTTTAACTCAGCGGTTCGCCCTACCCGCCGGCGCCACCGCTACCGCCACTCTCTTTCTTTTATTTGTTCTCTTGTTTGGCTGCCATTATTGTGAACTCTTCTTGGAAGATCCTCCCTCCAAGGAGTTTATTGATGAATTTCTCAAGATTAAGATTTTCTTGGAGGATTCCAGCATACGTAGTGATGATGAGGTAAATGAAGAAGATATGGATGTTGAAGACACCGGTGATGAAGAGATTGCCAATGCACTAGCTGTTGCACAAACACTTGGAAAATCTCCTGAGACCACAAAGTCAAAAACCAAATATGACGATCTCGCTGAAGGTTTGAAGGAACTCAGCATGGACCGTTATGATGATGAAGATGATGAAGCAAGAAACCCTTCCCATTCAGGTTACAAGTGGCTAGTTACAACAGATGTGGAGAGCTTGGCATGGGATCCACGTACAGAGCACATGTTTGTGCTTTGGCCGATTTCTAGCTTCTGTTTGTCTGTACTCTTCTCCAGCTACTTGCAACTGGATCTACTGACAAAGTGGTGTGGGATACATTATCTGATGCTGCAGTCTCTTGGAAGTTTGGAAAGTACGGGCAGCCGATATCTTAAATTGTTGTTTGAAAAATTGCTGAGTACCGGGGCTCCAAATTTGTTTGTATTTGATGTTAGTTATACTGTAAAGAACGTTGGTGAAAATGAAAATTGGATTTCATATTCATAA

Coding sequence (CDS)

ATGGGTTCCCAATCATTTCGCACCGTTTTAACTCAGCGGTTCGCCCTACCCGCCGGCGCCACCGCTACCGCCACTCTCTTTCTTTTATTTGTTCTCTTGTTTGGCTGCCATTATTGTGAACTCTTCTTGGAAGATCCTCCCTCCAAGGAGTTTATTGATGAATTTCTCAAGATTAAGATTTTCTTGGAGGATTCCAGCATACGTAGTGATGATGAGGTAAATGAAGAAGATATGGATGTTGAAGACACCGGTGATGAAGAGATTGCCAATGCACTAGCTGTTGCACAAACACTTGGAAAATCTCCTGAGACCACAAAGTCAAAAACCAAATATGACGATCTCGCTGAAGGTTTGAAGGAACTCAGCATGGACCGTTATGATGATGAAGATGATGAAGCAAGAAACCCTTCCCATTCAGGTTACAAGTGGCTAGTTACAACAGATGTGGAGAGCTTGGCATGGGATCCACGTACAGAGCACATGTTTGTGCTTTGGCCGATTTCTAGCTTCTGTTTGTCTGTACTCTTCTCCAGCTACTTGCAACTGGATCTACTGACAAAGTGGTGTGGGATACATTATCTGATGCTGCAGTCTCTTGGAAGTTTGGAAAGTACGGGCAGCCGATATCTTAAATTGTTGTTTGAAAAATTGCTGAGTACCGGGGCTCCAAATTTGTTTGTATTTGATGTTAGTTATACTGTAAAGAACGTTGGTGAAAATGAAAATTGGATTTCATATTCATAA

Protein sequence

MGSQSFRTVLTQRFALPAGATATATLFLLFVLLFGCHYCELFLEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPETTKSKTKYDDLAEGLKELSMDRYDDEDDEARNPSHSGYKWLVTTDVESLAWDPRTEHMFVLWPISSFCLSVLFSSYLQLDLLTKWCGIHYLMLQSLGSLESTGSRYLKLLFEKLLSTGAPNLFVFDVSYTVKNVGENENWISYS
Homology
[Close]
BLAST of Clc06G16100 vs. NCBI nr
Match: XP_038890811.1 (uncharacterized WD repeat-containing protein C17D11.16-like [Benincasa hispida] >XP_038890812.1 uncharacterized WD repeat-containing protein C17D11.16-like [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 5.5e-26
Identity = 73/109 (66.97%), Postives = 81/109 (74.31%), Query Frame = 0 

Query: 43  LEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSP 102
           L DPPSKE IDE LK K  ++DSS  SDDE +E DMDVED  DEEIANALAVAQ LGKS 
Sbjct: 19  LADPPSKETIDELLKSKHVVDDSSKHSDDEADEGDMDVEDANDEEIANALAVAQALGKSS 78

Query: 103 ETTKSKTKYDDLAEGLKELSMDRYDDEDDEAR-NPSHSGYKWLVTTDVE 151
           ETTKS TKYDD+AEGLKEL MD YDDEDDE     S +G  +  T D++
Sbjct: 79  ETTKSDTKYDDIAEGLKELDMDNYDDEDDEIELFTSGAGDAYYPTNDMD 127

[Close]
BLAST of Clc06G16100 vs. NCBI nr
Match: KAG7021602.1 (hypothetical protein SDJN02_15328 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-25
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIK-IFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 104
           DPPSKE IDE LK K +  EDSS  S+DEV+EEDMDVED  DEEIANALAVAQ LGKS E
Sbjct: 21  DPPSKETIDELLKSKDVLEEDSSKHSEDEVDEEDMDVEDANDEEIANALAVAQALGKSSE 80

Query: 105 TTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           TTKS+TKYDD+AEGLKEL MD YDDEDDE
Sbjct: 81  TTKSETKYDDIAEGLKELDMDHYDDEDDE 109

[Close]
BLAST of Clc06G16100 vs. NCBI nr
Match: KAG7021602.1 (hypothetical protein SDJN02_15328 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKWLVT DVESLAWDP TEHMFV+
Sbjct: 335 DGRNPSHSGYKWLVTADVESLAWDPHTEHMFVV 367


HSP 2 Score: 127.9 bits (320), Expect = 1.2e-25
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIK-IFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 104
           DPPSKE IDE LK K +  EDSS  S+DEV+EEDMDVED  DEEIANALAVAQ LGKS E
Sbjct: 21  DPPSKETIDELLKSKDVLEEDSSKHSEDEVDEEDMDVEDANDEEIANALAVAQALGKSSE 80

Query: 105 TTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           TTKS+TKYDD+AEGLKEL MD YDDEDDE
Sbjct: 81  TTKSETKYDDIAEGLKELDMDHYDDEDDE 109

[Close]
BLAST of Clc06G16100 vs. NCBI nr
Match: XP_022933466.1 (uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita moschata] >KAG6587643.1 hypothetical protein SDJN03_16208, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKWLVT DVESLAWDP TEHMFV+
Sbjct: 338 DGRNPSHSGYKWLVTADVESLAWDPHTEHMFVV 370


HSP 2 Score: 127.9 bits (320), Expect = 1.2e-25
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIK-IFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 104
           DPPSKE IDE LK K +  EDSS  S+DEV+EEDMDVED  DEEIANALAVAQ LGKS E
Sbjct: 21  DPPSKETIDELLKSKDVLEEDSSKHSEDEVDEEDMDVEDANDEEIANALAVAQALGKSSE 80

Query: 105 TTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           TTKS+TKYDD+AEGLKEL MD YDDEDDE
Sbjct: 81  TTKSETKYDDIAEGLKELDMDHYDDEDDE 109

[Close]
BLAST of Clc06G16100 vs. NCBI nr
Match: XP_023529554.1 (uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKWLVT DVESLAWDP TEHMFV+
Sbjct: 338 DGRNPSHSGYKWLVTADVESLAWDPHTEHMFVV 370


HSP 2 Score: 123.2 bits (308), Expect = 3.0e-24
Identity = 66/90 (73.33%), Postives = 72/90 (80.00%), Query Frame = 0 

Query: 43  LEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSP 102
           L DPPS+E IDE LK    +EDSS  SDDE +EEDMDVED  DEEIANALAVAQ LGKS 
Sbjct: 19  LADPPSQEIIDELLKSSQVVEDSSKHSDDEADEEDMDVEDPSDEEIANALAVAQALGKSS 78

Query: 103 ETTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           ETT  +TKYDD+AEGLKEL MD YD+EDDE
Sbjct: 79  ETTNLETKYDDIAEGLKELDMDNYDNEDDE 108

[Close]
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match: A0A6J1EZ45 (uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita moschata OX=3662 GN=LOC111440869 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.0e-26
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIK-IFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 104
           DPPSKE IDE LK K +  EDSS  S+DEV+EEDMDVED  DEEIANALAVAQ LGKS E
Sbjct: 21  DPPSKETIDELLKSKDVLEEDSSKHSEDEVDEEDMDVEDANDEEIANALAVAQALGKSSE 80

Query: 105 TTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           TTKS+TKYDD+AEGLKEL MD YDDEDDE
Sbjct: 81  TTKSETKYDDIAEGLKELDMDHYDDEDDE 109

[Close]
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match: A0A6J1EZ45 (uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita moschata OX=3662 GN=LOC111440869 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-08
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKWLVT DVESLAWDP TEHMFV+
Sbjct: 338 DGRNPSHSGYKWLVTADVESLAWDPHTEHMFVV 370


HSP 2 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 66/90 (73.33%), Postives = 72/90 (80.00%), Query Frame = 0 

Query: 43  LEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSP 102
           L DPPS+E IDE LK    +EDSS  SDDE +EEDMDVED  DEEIANALAVAQ LGKS 
Sbjct: 19  LADPPSQEIIDELLKSSQVVEDSSKHSDDEADEEDMDVEDPSDEEIANALAVAQALGKSS 78

Query: 103 ETTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           ETT  +TKYDD+AEGLKEL MD YD+EDDE
Sbjct: 79  ETTNLETKYDDIAEGLKELDMDNYDNEDDE 108

[Close]
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match: A0A1S3BUS3 (periodic tryptophan protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC103493411 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKW VT DVESLAWDP TEHMFV+
Sbjct: 335 DGRNPSHSGYKWQVTADVESLAWDPHTEHMFVV 367


HSP 2 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIK-IFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 104
           DPPSKE IDE LK K +  EDSS  S+DEV++EDMDVED  DEEIANALAVAQ LGKS +
Sbjct: 21  DPPSKETIDELLKSKDVLEEDSSKHSEDEVDKEDMDVEDANDEEIANALAVAQALGKSSK 80

Query: 105 TTKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           TT S+TKYDD+AEGLKEL MD YDDEDDE
Sbjct: 81  TTMSETKYDDIAEGLKELDMDHYDDEDDE 109

[Close]
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match: A0A6J1KY07 (uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita maxima OX=3661 GN=LOC111499760 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-08
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKWLVT DVESLAWDP TEHMFV+
Sbjct: 338 DGRNPSHSGYKWLVTADVESLAWDPHTEHMFVV 370


HSP 2 Score: 121.7 bits (304), Expect = 4.3e-24
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 43  LEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSP 102
           L DPPS+E IDE LK    +EDSS  SDDE +EEDMDVED  DEEIANALAVAQ LGKS 
Sbjct: 19  LADPPSQEIIDELLKSSQVVEDSSKHSDDEADEEDMDVEDPSDEEIANALAVAQALGKSS 78

Query: 103 ETTKSKTKYDDLAEGLKELSMDRYDDEDD 132
           ETT  +TKYDD+AEGLKEL MD YD+EDD
Sbjct: 79  ETTNLETKYDDIAEGLKELDMDNYDNEDD 107

[Close]
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match: A0A5D3BBF1 (Periodic tryptophan protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00020 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + RNPSHSGYKW VT DVESLAWDP TEHMFV+
Sbjct: 545 DGRNPSHSGYKWQVTADVESLAWDPHTEHMFVV 577


HSP 2 Score: 121.7 bits (304), Expect = 4.3e-24
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 43  LEDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSP 102
           L DPPS+E IDE LK    +EDSS  SDDE +EEDMDVED  DEEIANALAVAQ LGKS 
Sbjct: 19  LADPPSQEIIDELLKSSQVVEDSSKHSDDEADEEDMDVEDPSDEEIANALAVAQALGKSS 78

Query: 103 ETTKSKTKYDDLAEGLKELSMDRYDDEDD 132
           ETT  +TKYDD+AEGLKEL MD YD+EDD
Sbjct: 79  ETTNLETKYDDIAEGLKELDMDNYDNEDD 107

[Close]
BLAST of Clc06G16100 vs. TAIR 10
Match: AT4G18905.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-09
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDE--EIANALAVAQTLGKSP 104
           +PPSKE + E ++   F  +    ++DE  E    +E+ G+E  E+ +A AVA+ LGKS 
Sbjct: 21  EPPSKEELKELIESGAFARNVEGSNEDEEEE----IEEDGEEISEVDHAKAVAEALGKSS 80

Query: 105 ET--TKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           ++    S  + D++++GLKEL MD YD+EDDE
Sbjct: 81  KSKAVSSSMEVDEVSQGLKELDMDNYDEEDDE 108


HSP 2 Score: 55.5 bits (132), Expect = 7.2e-08
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + R PSHSG+KW V +DVESLAWDP  EH FV+
Sbjct: 337 DGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVV 369

[Close]
BLAST of Clc06G16100 vs. TAIR 10
Match: AT4G18905.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-09
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 45  DPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDE--EIANALAVAQTLGKSP 104
           +PPSKE + E ++   F  +    ++DE  E    +E+ G+E  E+ +A AVA+ LGKS 
Sbjct: 21  EPPSKEELKELIESGAFARNVEGSNEDEEEE----IEEDGEEISEVDHAKAVAEALGKSS 80

Query: 105 ET--TKSKTKYDDLAEGLKELSMDRYDDEDDE 133
           ++    S  + D++++GLKEL MD YD+EDDE
Sbjct: 81  KSKAVSSSMEVDEVSQGLKELDMDNYDEEDDE 108


HSP 2 Score: 55.5 bits (132), Expect = 7.2e-08
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + R PSHSG+KW V +DVESLAWDP  EH FV+
Sbjct: 347 DGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVV 379

[Close]
BLAST of Clc06G16100 vs. TAIR 10
Match: AT4G18900.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-08
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + R PSHSG+KW V +DVESLAWDP +EH FV+
Sbjct: 305 DGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVV 337


HSP 2 Score: 51.6 bits (122), Expect = 1.0e-06
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 0 

Query: 44  EDPPSKEFIDEFLKIKIFLEDSSIRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPE 103
           ++ PSKE      +I++  +     S+D   EE  D E+ G  E+A+A AVA+  GKS +
Sbjct: 4   DELPSKE------EIEMHKDSCKYFSNDTEEEETEDEEENG--EVAHAKAVAEEFGKSSK 63

Query: 104 T---TKSKTKYDDLAEGLKELSMDRYDDEDD 132
           +   + S    D++AEGLKEL MD YD+EDD
Sbjct: 64  SKNVSSSMELDDEVAEGLKELDMDNYDEEDD 86

[Close]
BLAST of Clc06G16100 vs. TAIR 10
Match: AT4G35370.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.4e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 132 EARNPSHSGYKWLVTTDVESLAWDPRTEHMFVL 165
           + R+PS+SG KW     VE LAWDP +EH FV+
Sbjct: 288 DGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVV 320


HSP 2 Score: 43.1 bits (100), Expect = 3.7e-04
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 67  IRSDDEVNEEDMDVEDTGDEEIANALAVAQTLGKSPETTKSKTKYDDLAEGLKELSMDRY 126
           + ++    EE MD ++  + ++ +A +VA++ GKS   + S T  D++ + LKEL MD Y
Sbjct: 19  VAAESPCMEEKMD-DEIQNAQVTHAKSVAKSFGKSKVASSSSTDADEVVKFLKELDMDNY 78

Query: 127 DDEDDE 133
           D+EDDE
Sbjct: 79  DEEDDE 83

The following BLAST results are available for this feature:
BLAST of Clc06G16100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890811.15.5e-2666.97uncharacterized WD repeat-containing protein C17D11.16-like [Benincasa hispida] ... [more]
KAG7021602.11.2e-2578.65hypothetical protein SDJN02_15328 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7021602.11.2e-0784.85hypothetical protein SDJN02_15328 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022933466.11.2e-0784.85uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita moschata] >KAG... [more]
XP_023529554.11.2e-0784.85uncharacterized WD repeat-containing protein C17D11.16 [Cucurbita pepo subsp. pe... [more]

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BLAST of Clc06G16100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G16100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EZ456.0e-2678.65uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita moschata OX=... [more]
A0A6J1EZ455.6e-0884.85uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita moschata OX=... [more]
A0A1S3BUS32.8e-0781.82periodic tryptophan protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC103493411 PE... [more]
A0A6J1KY075.6e-0884.85uncharacterized WD repeat-containing protein C17D11.16 OS=Cucurbita maxima OX=36... [more]
A0A5D3BBF12.8e-0781.82Periodic tryptophan protein 1-like protein OS=Cucumis melo var. makuwa OX=119469... [more]

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BLAST of Clc06G16100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18905.18.6e-0940.22Transducin/WD40 repeat-like superfamily protein [more]
AT4G18905.28.6e-0940.22Transducin/WD40 repeat-like superfamily protein [more]
AT4G18900.14.2e-0866.67Transducin/WD40 repeat-like superfamily protein [more]
AT4G35370.14.4e-0554.55Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G16100.1Clc06G16100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005634 nucleus