Clc06G14930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G14930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glutaredoxin-C4-like
Location	ClcChr06: 25879541 .. 25882051 (-)
RNA-Seq Expression	Clc06G14930
Synteny	Clc06G14930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTGCAACGTAAAAGGTGTTGCTATCTTCTAAGACGTTTGAATACTCATCAATATACAAAACGATTAAAGCGATTAATCGCCAAACTCAGAAACCTGATAGGAAAAAGGTTAGTTGCTGTCCGGAATTTGGATCGATGGCGGCGACGGTGAGTATGAGGAAGATGCTGACGGTATCAGCAGCCATGGTCTGCGCCGTAGCCGTAGCGTCTATATGCGGGGCTTCATCTTCCCCAGAATCACGCTTCATCAAAAACACCATCGCCTCCCATCAGATCGTCATATTCTCCAAGTCCTATTGCCCGTATTTTTCTTTCTCCTTTCTCTTTCTTATCTTAATCGATTTGTTCATACTCCCAATGTGGAGATCTAATTAGTGTTGTTCTACAATTGGAACCAGATCGGGGATTGATGAATGATTTGGGGGGGGGGGGGGAGATTTCTCCTTCTCTTAATTGTTGTTGTTGTTGTAATGTAGGTACTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGGTACCTGCATAATCTGCAATTACTCCACTGGCTTAAATCTGTTTGAAACTCAGTATGCTTGTTTCTTGTGTCCGAGGTCCTTTCTTTATATCTGGATTTCGGTCAATTTTATATGAAAATCTTGTTCTGGCTTATTCTCTCCGTACTAAGAAAATATTGGAGTGTGATATTACACTTGATATGGGCATTCTTGAGTTTTTTGAAGCTCAAGCTCAAGTTTTAAGTTAATCGCTTATTTTTATTCCCATAGCAAACTCCGTCTGCTTCTCTTCTCATTTCTTTTCTGATGATTTCGTTATCATTGTTTAAAAGAACGATCTGGTCTTACTTAATTGTTACGGAGTAGTTAGAGAATCTGTGCTTAGTATTATTGGCTCTAGCGTCTTGAAATGGTGATTTCCTGCAAATGAAATACTTGTGTATTAGGTATTGTGTGACATGATGCTCTGTAAAATGCTTTCCAAATTCAAAACTAACATGATTGTTTGGGATAGTCTATTTTCTTCATATGAAATTCTCAGTCGATGTGAGTATAGTTCAACTGGTTTAGAAGTATATCCTCAACTGAGAGGTTAGAGTTTCAAATCCCCGCCTCATATATGCTATTGTACTCGAAAAGAAAAAAAGAATCAAATTACTCTACCTAATTAGAATCACACACTCAGATCTGCCCCCAAACAATGGGTTAAGAACTAGGAAGTGTGTCCTTTTGGAAGGCAATTCCTTCTAATGTATTTGTGTTTTTTTGAGTTAAGAGAGGGGGCAAAGAGTCGGAAATGGTAGAGGAAGGAAGAAAACAGCAATGAAAGGGAGTAACGGTGTGCAAGAGTGTGTATGGTTAGTTGGTGCTTGAAATGTCTAATTTCCTGAGAAAAAGTTTAGGTAATGGGTCGACATTTTATCAAATGTATTTTGTTGTTCAAAATCTTCTTCTATTTATCCATTTTTAGTTGATATGGAGGTTCTTTGTTTCGTTTCTTCTCTTTTGTTTCCCTTTTTGACGAGAGTGGGGAGAATTAAACTGCCTAGCAAAACGGTTATCAATGAAAGCAGTTATTTCTTCAGAAGTATTTGTGGGCTTGGTTTTTTTTTTTTCTTTTTTATGTTCTTGTATTATTTCTTTCTTTCTCAATCAAAGTAGTTGTTTCTAAAAATCCAAAACGATTATTAATTAACATATATCTCGCTCTTGTTTCCATATCTATTTATATCCAGTGTTAACTCTATCTGTTCTATTACTCATAACCTAAAAGTTAATTATTCCTAGAATATGGATCTGTTTTGCACAGATGATGGGAGTGTCATTCAAGATGCTCTAAGTGCACTTATTGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACTTGGGCGGATCGGATGGTAATTGGCTCTTCTTTGACAACTTATTGTCTGTAATATATTTTTCTCCAAAGTACTTTTAACTCATTGAAACCCTCATTTCCAGATACTGTTGAAGCATATGAGAGTGGGAAGTTGGGTAAACTCCTGGGTATCAAGGACGACCACAAAGCTGATCTTTGAGTTGTGATCTTTGAACTCAAACCTTCAATTGTAAGCAGATATCTTTACACCAACAGAGTATGTTTTGCTTGGATTAATTGTTCAATTGTAATTCTTGATGGTGGAGGATAAGTCGTCTCTGATATAGGGGTATCAAAACCAGTGATAACAATGCTTTTAGTAAGGGATTTTTCAAACTTTAGTCAATAGATTGAACCATTTTTGCCCCTCTAGTTTTGCTTGTTAATTGGATACTGTTGGTCCTCCCATTTTCTAGACTGGTTTTTTCTTCTACATGCCCTAAAAGTCTTCTTTTCTGGACCATGAATGTCTTAAAAAATTATATTTGATTTGAGTCTATGTTGGTTAGAGGTGAGGATTTGAACCTTCAACTTTCTTGTCGATTATATGTCTAATTAGTGGTTGAA

mRNA sequence

tttatttgcaacgtaaaaggtgttgctatcttctaagacgtttgaatactcatcaatatacaaaacgattaaagcgattaatcgccaaactcagaaacctgataggaaaaaggttagttgctgtccggaatttggatcgatggcggcgacggtgagtatgaggaagatgctgacggtatcagcagccatggtctgcgccgtagccgtagcgtctatatgcggggcttcatcttccccagaatcacgcttcatcaaaaacaccatcgcctcccatcagatcgtcatattctccaagtcctattgcccgtactgtagaagggcaaaagctgttttcaaggaattgcacaaagttcctcatgttgttgagctggatcaaagaggtacctgcataatctgcaattactccactggcttaaatctgtttgaaactcagtatgcttgtttcttgtatgatgggagtgtcattcaagatgctctaagtgcacttattggaaggcggactgtacctcaagtgttcatagatggaaaacacttgggcggatcggatgatactgttgaagcatatgagagtgggaagttgggtaaactcctgggtatcaaggacgaccacaaagctgatctttgagttgtgatctttgaactcaaaccttcaattgtaagcagatatctttacaccaacagagtatgttttgcttggattaattgttcaattgtaattcttgatggtggaggataagtcgtctctgatataggggtatcaaaaccagtgataacaatgcttttagtaagggatttttcaaactttagtcaatagattgaaccatttttgcccctctagttttgcttgttaattggatactgttggtcctcccattttctagactggttttttcttctacatgccctaaaagtcttcttttctggaccatgaatgtcttaaaaaattatatttgatttgagtctatgttggttagaggtgaggatttgaaccttcaactttcttgtcgattatatgtctaattagtggttgaa

Coding sequence (CDS)

ATGGCGGCGACGGTGAGTATGAGGAAGATGCTGACGGTATCAGCAGCCATGGTCTGCGCCGTAGCCGTAGCGTCTATATGCGGGGCTTCATCTTCCCCAGAATCACGCTTCATCAAAAACACCATCGCCTCCCATCAGATCGTCATATTCTCCAAGTCCTATTGCCCGTACTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGGTACCTGCATAATCTGCAATTACTCCACTGGCTTAAATCTGTTTGAAACTCAGTATGCTTGTTTCTTGTATGATGGGAGTGTCATTCAAGATGCTCTAAGTGCACTTATTGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACTTGGGCGGATCGGATGATACTGTTGAAGCATATGAGAGTGGGAAGTTGGGTAAACTCCTGGGTATCAAGGACGACCACAAAGCTGATCTTTGA

Protein sequence

MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL

Homology

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BLAST of Clc06G14930 vs. NCBI nr
Match: XP_004146344.1 (glutaredoxin-C4 [Cucumis sativus] >KGN65502.1 hypothetical protein Csa_019592 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-55
Identity = 122/161 (75.78%), Postives = 131/161 (81.37%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+CGASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKELHKVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELHKVPHVVELDQRD-----------------------DGSSLQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDT+EAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTLEAYESGELRKLLGIKEDHKADL 137

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BLAST of Clc06G14930 vs. NCBI nr
Match: XP_038878490.1 (glutaredoxin-C4 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 119/161 (73.91%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           M ATV+MRKMLT SAAMVCAVAV S+CGA SSPE+RFIKNTI+SHQIVIFSKSYCPYCRR
Sbjct: 1   MTATVNMRKMLTASAAMVCAVAVVSLCGALSSPETRFIKNTISSHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL KVPHVVELDQR                        DGS IQDALSA +G R
Sbjct: 61  AKAVFKELRKVPHVVELDQRD-----------------------DGSAIQDALSARVGSR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFI GKH+GGSDDTVEAYESG+LGKLLGIK+D+KADL
Sbjct: 121 TVPQVFIGGKHIGGSDDTVEAYESGELGKLLGIKEDNKADL 138

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BLAST of Clc06G14930 vs. NCBI nr
Match: TYK28556.1 (glutaredoxin-C4-like [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 121/161 (75.16%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELNKVPHVVELDQRD-----------------------DGSALQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDTVEAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKEDHKADL 137

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BLAST of Clc06G14930 vs. NCBI nr
Match: XP_008453540.1 (PREDICTED: glutaredoxin-C4-like [Cucumis melo] >KAA0058193.1 glutaredoxin-C4-like [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 9.1e-54
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKN IASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELNKVPHVVELDQRD-----------------------DGSALQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDTVEAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKEDHKADL 137

[Close]

BLAST of Clc06G14930 vs. NCBI nr
Match: XP_022921332.1 (glutaredoxin-C4-like [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-53
Identity = 118/161 (73.29%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAAT+SMRKMLTVSAAMVCAVAVAS+ GAS+S E+RFIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATMSMRKMLTVSAAMVCAVAVASLYGASASTETRFIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVP+VVELDQR                        DGS IQDA  ALIGRR
Sbjct: 61  AKAVFKELNKVPYVVELDQR-----------------------EDGSEIQDAFMALIGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVF++GKH+GGSDDT+EAYESGKL KLLGI ++HKADL
Sbjct: 121 TVPQVFVNGKHIGGSDDTIEAYESGKLSKLLGINEEHKADL 138

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BLAST of Clc06G14930 vs. ExPASy Swiss-Prot
Match: Q8LFQ6 (Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-35
Identity = 78/154 (50.65%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 8   RKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKE 67
           R +  V   +     ++ +  A+SSPE+ F+K TI+SH+IVIFSKSYCPYC++AK+VF+E
Sbjct: 5   RSISMVMLLVALVTFISMVSSAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRE 64

Query: 68  LHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFI 127
           L +VP+VVELD+R                        DG  IQ AL  ++GRRTVPQVFI
Sbjct: 65  LDQVPYVVELDER-----------------------EDGWSIQTALGEIVGRRTVPQVFI 124

Query: 128 DGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           +GKHLGGSDDTV+AYESG+L KLLG+  + +A+L
Sbjct: 125 NGKHLGGSDDTVDAYESGELAKLLGVSGNKEAEL 135

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BLAST of Clc06G14930 vs. ExPASy Swiss-Prot
Match: Q0DAE4 (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAA +  R    ++AA + A+A      + ++ +S F+K+T+ +H +VIFSKSYCPYCRR
Sbjct: 1   MAALLGRR--FGMAAAALIALAALGSAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRR 60

Query: 61  AKAVFKELH--KVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIG 120
           AKAVFKEL   K P+VVELDQR                        DG  IQDALS ++G
Sbjct: 61  AKAVFKELELKKEPYVVELDQR-----------------------EDGWEIQDALSDMVG 120

Query: 121 RRTVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           RRTVPQVF+ GKHLGGSDDTVEAYESGKL KLL I  D K DL
Sbjct: 121 RRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNI--DVKEDL 136

[Close]

BLAST of Clc06G14930 vs. ExPASy Swiss-Prot
Match: Q9FVX1 (Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 6   SMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVF 65
           S R+++  +  +   +   S    +++  S F++N I S++IVIFSKSYCPYC R+K +F
Sbjct: 5   SPRRVVVAALLLFVVLCDLSNSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIF 64

Query: 66  KELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQV 125
            +L + P VVELDQR                        DG  IQ  L   +GRRTVPQV
Sbjct: 65  SQLKEEPFVVELDQR-----------------------EDGDQIQYELLEFVGRRTVPQV 124

Query: 126 FIDGKHLGGSDDTVEAYESGKLGKLL 152
           F++GKH+GGSDD   A ESG+L KLL
Sbjct: 125 FVNGKHIGGSDDLGAALESGQLQKLL 127

[Close]

BLAST of Clc06G14930 vs. ExPASy Swiss-Prot
Match: Q6H628 (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 8   RKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKE 67
           R  + ++  ++  +A A    A+ SP S F++N I S++I IFSK+YCPY  RAK +F++
Sbjct: 5   RAAVPIAVFLLLVLAEADPAAATRSP-SAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRD 64

Query: 68  LHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFI 127
           L + P++VELD R                        DG  IQ  L  L+GR TVPQVF+
Sbjct: 65  LKENPYIVELDLR-----------------------EDGREIQSVLLDLVGRHTVPQVFV 124

Query: 128 DGKHLGGSDDTVEAYESGKLGKLLG 153
           +G+H+GGSDDT  A+ +G+L KLLG
Sbjct: 125 NGQHVGGSDDTANAHSNGQLQKLLG 125

[Close]

BLAST of Clc06G14930 vs. ExPASy Swiss-Prot
Match: Q0J3L4 (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 29  ASSSPESRF-------IKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRG 88
           +SSSP+S F       +K T+A + +VI+SKS+C Y    KA+FK +   PHV+ELDQ G
Sbjct: 47  SSSSPDSSFGSRMEDSVKRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLG 106

Query: 89  TCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEA 148
                                   G  +Q  L  L G+ TVP VFI GKH+GG  DTV+ 
Sbjct: 107 A----------------------QGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKL 158

Query: 149 YESGKLGKLLGIKD 156
           +  G+L  +L   D
Sbjct: 167 HRKGELATMLSELD 158

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BLAST of Clc06G14930 vs. ExPASy TrEMBL
Match: A0A0A0LXH3 (Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G427520 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 122/161 (75.78%), Postives = 131/161 (81.37%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+CGASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCGASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKELHKVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELHKVPHVVELDQRD-----------------------DGSSLQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDT+EAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTLEAYESGELRKLLGIKEDHKADL 137

[Close]

BLAST of Clc06G14930 vs. ExPASy TrEMBL
Match: A0A5D3DXQ7 (Glutaredoxin-C4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002030 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 121/161 (75.16%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELNKVPHVVELDQRD-----------------------DGSALQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDTVEAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKEDHKADL 137

[Close]

BLAST of Clc06G14930 vs. ExPASy TrEMBL
Match: A0A5A7UQP8 (Glutaredoxin-C4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005140 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.4e-54
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKN IASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELNKVPHVVELDQRD-----------------------DGSALQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDTVEAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKEDHKADL 137

[Close]

BLAST of Clc06G14930 vs. ExPASy TrEMBL
Match: A0A1S3BXN4 (glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494223 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.4e-54
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAATVSMRK+LT SAAMVCAVA+AS+C ASSSPES FIKN IASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATVSMRKILTASAAMVCAVAIASLCRASSSPES-FIKNAIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVPHVVELDQR                        DGS +Q+ALS L GRR
Sbjct: 61  AKAVFKELNKVPHVVELDQRD-----------------------DGSALQNALSVLFGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVFIDGKH+GGSDDTVEAYESG+L KLLGIK+DHKADL
Sbjct: 121 TVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKEDHKADL 137

[Close]

BLAST of Clc06G14930 vs. ExPASy TrEMBL
Match: A0A6J1E059 (glutaredoxin-C4-like OS=Cucurbita moschata OX=3662 GN=LOC111429636 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 118/161 (73.29%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MAATVSMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRR 60
           MAAT+SMRKMLTVSAAMVCAVAVAS+ GAS+S E+RFIKNTIASHQIVIFSKSYCPYCRR
Sbjct: 1   MAATMSMRKMLTVSAAMVCAVAVASLYGASASTETRFIKNTIASHQIVIFSKSYCPYCRR 60

Query: 61  AKAVFKELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRR 120
           AKAVFKEL+KVP+VVELDQR                        DGS IQDA  ALIGRR
Sbjct: 61  AKAVFKELNKVPYVVELDQR-----------------------EDGSEIQDAFMALIGRR 120

Query: 121 TVPQVFIDGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           TVPQVF++GKH+GGSDDT+EAYESGKL KLLGI ++HKADL
Sbjct: 121 TVPQVFVNGKHIGGSDDTIEAYESGKLSKLLGINEEHKADL 138

[Close]

BLAST of Clc06G14930 vs. TAIR 10
Match: AT5G20500.1 (Glutaredoxin family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-36
Identity = 78/154 (50.65%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 8   RKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKE 67
           R +  V   +     ++ +  A+SSPE+ F+K TI+SH+IVIFSKSYCPYC++AK+VF+E
Sbjct: 5   RSISMVMLLVALVTFISMVSSAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRE 64

Query: 68  LHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFI 127
           L +VP+VVELD+R                        DG  IQ AL  ++GRRTVPQVFI
Sbjct: 65  LDQVPYVVELDER-----------------------EDGWSIQTALGEIVGRRTVPQVFI 124

Query: 128 DGKHLGGSDDTVEAYESGKLGKLLGIKDDHKADL 162
           +GKHLGGSDDTV+AYESG+L KLLG+  + +A+L
Sbjct: 125 NGKHLGGSDDTVDAYESGELAKLLGVSGNKEAEL 135

[Close]

BLAST of Clc06G14930 vs. TAIR 10
Match: AT1G77370.1 (Glutaredoxin family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 6   SMRKMLTVSAAMVCAVAVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVF 65
           S R+++  +  +   +   S    +++  S F++N I S++IVIFSKSYCPYC R+K +F
Sbjct: 5   SPRRVVVAALLLFVVLCDLSNSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIF 64

Query: 66  KELHKVPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQV 125
            +L + P VVELDQR                        DG  IQ  L   +GRRTVPQV
Sbjct: 65  SQLKEEPFVVELDQR-----------------------EDGDQIQYELLEFVGRRTVPQV 124

Query: 126 FIDGKHLGGSDDTVEAYESGKLGKLL 152
           F++GKH+GGSDD   A ESG+L KLL
Sbjct: 125 FVNGKHIGGSDDLGAALESGQLQKLL 127

[Close]

BLAST of Clc06G14930 vs. TAIR 10
Match: AT2G20270.1 (Thioredoxin superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 22  AVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRG 81
           A++S   +S S     +K T+A + +V++SK++C Y  + K++FK L   P VVELDQ G
Sbjct: 62  AMSSSSSSSGSTLEETVKTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLG 121

Query: 82  TCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFIDGKHLGGSDDTVEA 141
           +                      +GS +Q+ L  + G+ TVP VFI GKH+GG  DT++ 
Sbjct: 122 S----------------------EGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQL 169

Query: 142 YESGKLGKLL 152
           +  G+L  +L
Sbjct: 182 HNKGELEAIL 169

[Close]

BLAST of Clc06G14930 vs. TAIR 10
Match: AT2G20270.2 (Thioredoxin superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-17
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 22  AVASICGASSSPESRFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRG 81
           A++S   +S S     +K T+A + +V++SK++C Y  + K++FK L   P VVELDQ  
Sbjct: 62  AMSSSSSSSGSTLEETVKTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLV 121

Query: 82  TCIICNYSTGLNLFETQ-YACFL----YDGSVIQDALSALIGRRTVPQVFIDGKHLGGSD 141
           +    +    + L   Q +  FL     +GS +Q+ L  + G+ TVP VFI GKH+GG  
Sbjct: 122 SLGKTSLPHDIGLKHLQKFWWFLAFPGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCS 181

Query: 142 DTVEAYESGKLGKLL 152
           DT++ +  G+L  +L
Sbjct: 182 DTLQLHNKGELEAIL 196

[Close]

BLAST of Clc06G14930 vs. TAIR 10
Match: AT4G28730.1 (Glutaredoxin family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 51/141 (36.17%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 19  CAV-AVASICGASSSPESRF-------IKNTIASHQIVIFSKSYCPYCRRAKAVFKELHK 78
           C+V A+ S   A+SS  S F       I+ T+  + +VI+SK++C YC   K +FK L  
Sbjct: 46  CSVRAMTSSSSAASSSSSSFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGV 105

Query: 79  VPHVVELDQRGTCIICNYSTGLNLFETQYACFLYDGSVIQDALSALIGRRTVPQVFIDGK 138
            P VVELDQ G                        G  +Q  L  L G+ TVP VF+ GK
Sbjct: 106 QPLVVELDQLGP----------------------QGPQLQKVLERLTGQHTVPNVFVCGK 164

Query: 139 HLGGSDDTVEAYESGKLGKLL 152
           H+GG  DTV+    G L  +L
Sbjct: 166 HIGGCTDTVKLNRKGDLELML 164

The following BLAST results are available for this feature:

BLAST of Clc06G14930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146344.1	2.8e-55	75.78	glutaredoxin-C4 [Cucumis sativus] >KGN65502.1 hypothetical protein Csa_019592 [C...	[more]
XP_038878490.1	2.4e-54	73.91	glutaredoxin-C4 [Benincasa hispida]	[more]
TYK28556.1	2.4e-54	75.16	glutaredoxin-C4-like [Cucumis melo var. makuwa]	[more]
XP_008453540.1	9.1e-54	74.53	PREDICTED: glutaredoxin-C4-like [Cucumis melo] >KAA0058193.1 glutaredoxin-C4-lik...	[more]
XP_022921332.1	2.7e-53	73.29	glutaredoxin-C4-like [Cucurbita moschata]	[more]

BLAST of Clc06G14930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFQ6	2.0e-35	50.65	Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2	[more]
Q0DAE4	1.4e-33	53.37	Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2	[more]
Q9FVX1	5.1e-23	42.47	Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1	[more]
Q6H628	1.5e-22	41.38	Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2...	[more]
Q0J3L4	1.1e-17	38.06	Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS10 PE...	[more]

BLAST of Clc06G14930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXH3	1.4e-55	75.78	Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G42752...	[more]
A0A5D3DXQ7	1.2e-54	75.16	Glutaredoxin-C4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629...	[more]
A0A5A7UQP8	4.4e-54	74.53	Glutaredoxin-C4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274...	[more]
A0A1S3BXN4	4.4e-54	74.53	glutaredoxin-C4-like OS=Cucumis melo OX=3656 GN=LOC103494223 PE=3 SV=1	[more]
A0A6J1E059	1.3e-53	73.29	glutaredoxin-C4-like OS=Cucurbita moschata OX=3662 GN=LOC111429636 PE=3 SV=1	[more]

BLAST of Clc06G14930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20500.1	1.4e-36	50.65	Glutaredoxin family protein	[more]
AT1G77370.1	3.6e-24	42.47	Glutaredoxin family protein	[more]
AT2G20270.1	3.3e-17	34.62	Thioredoxin superfamily protein	[more]
AT2G20270.2	9.5e-17	35.56	Thioredoxin superfamily protein	[more]
AT4G28730.1	3.1e-15	36.17	Glutaredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 29..157 e-value: 1.7E-33 score: 116.6
None	No IPR available	PANTHER	PTHR45694:SF19	BNAA02G04900D PROTEIN	coord: 105..148
None	No IPR available	PANTHER	PTHR45694	GLUTAREDOXIN 2	coord: 105..148
None	No IPR available	PANTHER	PTHR45694	GLUTAREDOXIN 2	coord: 9..80
None	No IPR available	PANTHER	PTHR45694:SF19	BNAA02G04900D PROTEIN	coord: 9..80
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 35..158 score: 19.704649
None	No IPR available	CDD	cd03419	GRX_GRXh_1_2_like	coord: 47..150 e-value: 1.14173E-37 score: 122.263
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 47..79 e-value: 7.3E-8 score: 32.5 coord: 108..131 e-value: 4.3E-6 score: 26.9
IPR011767	Glutaredoxin active site	PROSITE	PS00195	GLUTAREDOXIN_1	coord: 49..64
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 37..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G14930.2	Clc06G14930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004362	glutathione-disulfide reductase (NADPH) activity
molecular_function	GO:0097573	glutathione oxidoreductase activity