Clc06G13330 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G13330
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionEukaryotic translation initiation factor 5A
LocationClcChr06: 24271990 .. 24274953 (+)
RNA-Seq ExpressionClc06G13330
SyntenyClc06G13330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAACCATTCGCAAAAATGGATACATCGTAATCAAGAACAGACCCTGCAAGGTTTCCTTCTTCTTCTTCTTCTTCCGTTACACTTCCCATGGAATAAATTTTGGTTTCATTTCTTTATTTTTTTGAATCATGCAAGTGGGTTTGTGCTATTTTTTCTCAAAGGGTAGACGTTTGGTTGTTTGCTAATTTTGATGGTTCTGTTTCTAAGTGAAGATGGTCCCTAACTTTTGACTCGGTGACTACTGATTATGGTAATTGTTACTGTTATTGATGGTCTCCCTGATTGATTTATGTTTCCCCTTTACTTTCTCTTTGGTTGGACCTTGTGCTTTTGGGCTCTTTAAAGTATTTATAGAAGAGTTTATACACGATTATGGTGGATGAAACTTCTTTTCTTGAAATAAAAGGATTTTAGTTTCAGGGGTGTTTGGGGCTCTGAGTTAATTATGAAGTCCGAAGTTAATATTTTGGAGTTAGGAAGTTTGTGTTTGAGGTGCGGAGTTGCAAGACGAAGTTTTTCGATAAATATGCAAACTTCAATAGTACACACTATCAGAGTCGAGTTATTTAACACCAACTTATGAAGTTGGTGGACAAAACACGTTTCATATGTTATCTCACAATAATAATTGGGGTGGGAAGTTAAAGCAAGCATACTTCAATTGGCATAAAGTGTAGGTTCAATTCTGTCCATCCCATGTTGAACAATTTCCATGGGAATAAATTTTGAAGAGGTTGTGCAAGATCTGACTTAATGGGTTTGGTGTAAGTGCAAAACTATGAAATTTCAGGGTTACTGATTGATTATCTTTAATGGCATTAGCAAGTAATTATTTCACCCAATTTGGATTCGTTATATGAAATATATGGCCTGTGGTTTGCCAAAAATGTAGCTTGTTCATGCATCGTCTTTAGTAAAATTTTTTAGATGGACTTGGCTTATGAGGTAGAAGCCAGGCTAAAATGCTAATAGTGGATATATTTATCATGGTGCATTTGTCTTCTGTGAGAGTACTAACTTGTAGGAATATATATATTGGTAATATTAATATGGTAGTAGTTGGGACATATGAGTAATTAGCTAGTGCTGTCTTGGGTATAAATAAGAGTTGGGCACCATACGGGGGTGGATTATTTCGGTGAGAGTTTCCATTATGGGACTTTGGGAGAGAGATAACCTCCCGACAGGCTATTGGTATTGGTATATTGTAACTTCTCTTGATATTGCAATATATCATTATCTTTGTGTTTCTTTGAGTTTTATTGTTTGGTGGTATCCTAACATCTTAGTAGTCAGCAAAATGTCTTTGAAGCATCAGCAAAGCTTTTCTTTTGTAGAAAGAACTATGTTATGCATGTCATCTTCTTTTTGTGTGATCAAATGATACAATGTCCATGGTTATATAAAAAGTTAAATATCCGAAGAAGATTAAATTTCTCCTTTGGGAAATTTTATTCGAAGCTTTCAAAACCAAAGACCTCCTTCAAAGACGCATGCCATTCATGGTCATTTCACTCAGTTGGTGCACGTTGTGTAAAGTCGATGATGACTTTGAAAACCACATTTTCATTCACTGTTTGTTTGCTTGGTATTTTTGGAGCAGAGTGCATAAAGCTTTTGGGTGATCTCCTGTTCTTCCTATGGATGTTAAGGGTCTCCTCATCACTGTCCTAGTGGGTCACCCCTTTCGGATAGCCAAAGCATTGCTGTGGATGCACATATCTAGGGCCATCTTTTAGCTTCTTTTGAAGGAGAGAAATCAAAGAGTCTTTTTGGATAAAGAGCACCCATTTGAAATGTTCTTTGACCTCGTTGTTTATTATACTATATCATGATCTAATTTATTTGCTTCGTATAGCTATGCTTCCCTTTTAATCAATTGGGAAAGCCTATTGTAAAGTAATCCTCATGGATCTCTCATCCTTTTTGTAAATTTCACACAAAATTTATACATCAATGAAATCGTTTCTTATATAAAAAAACAGCTCAATTTTCCATGAATGGAAGGTTTTCTGAAATGTGCCATGCATATATGAATTAGTATGCTTTCAAGCCACTTACCAAGCATATTATGCTGCCATATATCATCTCTTTGTTTTTTCTTTCCTCCTAACTCTCTTACTTTCAGGTCGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTCGTCACTCTCTTCTTGTGTTCTACTTATCTAAGTACTGATTTTATTCTTCTAAGAAACTTTGCTTGTATTCATTGTAATACTATGCCTTTGCAGGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTTGTAAGTTCTAATTATATTGTTACACGATATTGCTTTATCTACGAAAGTTTAGATCAATTTCTCTGTCTATTGCTTCAATAAAGATTCAAGAAATCTAACTTGACCAAAACAAACAAAAAAGGAAAAAGAAAAAAAAAATGAAGATAGGAGGGAGCCTTGCAGTCTTGACCTATTTATTGACTTTGTAATATTGCAGGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGGTACGTTAGCGATGGTGTACTGTTACATTTACAAATCTTCAAGTCATTGCTATGTAGCTTTCTGCAATGCCGTAAATTATTTCATTTATTTTCATGTCGATAGCTTAAAGATGGGTTCGCCGAAGGCAAAGATCTTGTACTAACTGTCATGTCTGCCATGGGTGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA

mRNA sequence

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAACCATTCGCAAAAATGGATACATCGTAATCAAGAACAGACCCTGCAAGGTCGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCCGAAGGCAAAGATCTTGTACTAACTGTCATGTCTGCCATGGGTGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAACCATTCGCAAAAATGGATACATCGTAATCAAGAACAGACCCTGCAAGGTCGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCCGAAGGCAAAGATCTTGTACTAACTGTCATGTCTGCCATGGGTGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA

Protein sequence

MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS
Homology
[Close]
BLAST of Clc06G13330 vs. NCBI nr
Match: XP_008443857.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_038880020.1 eukaryotic translation initiation factor 5A-2 [Benincasa hispida] >KAA0035077.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa] >TYK03602.1 eukaryotic translation initiation factor 5A-2 [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160

[Close]
BLAST of Clc06G13330 vs. NCBI nr
Match: XP_022930431.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_022969168.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita maxima] >XP_023529298.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6587824.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035679.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.2 bits (840), Expect = 4.0e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Clc06G13330 vs. NCBI nr
Match: XP_022135162.1 (eukaryotic translation initiation factor 5A-2-like [Momordica charantia])

HSP 1 Score: 327.4 bits (838), Expect = 6.9e-86
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK+
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of Clc06G13330 vs. NCBI nr
Match: XP_004146682.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypothetical protein Csa_019565 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK+
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of Clc06G13330 vs. NCBI nr
Match: PSS08119.1 (Eukaryotic translation initiation factor 5A-2 [Actinidia chinensis var. chinensis])

HSP 1 Score: 322.0 bits (824), Expect = 2.9e-84
Identity = 154/160 (96.25%), Postives = 159/160 (99.38%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQ+KDGF EGKDLV++VMSAMGEEQICALKDIGPKS
Sbjct: 121 DNLLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPKS 160

[Close]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 312.8 bits (800), Expect = 2.3e-84
Identity = 148/160 (92.50%), Postives = 158/160 (98.75%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           +NLL+Q+KDGFAEGKDLV++VMSAMGEE+IC+LKDIGPK+
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

[Close]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.0e-84
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH F+SKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQ+KDGFAEGKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.1e-84
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.1e-84
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-83
Identity = 148/159 (93.08%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+KDGFAEGKDLVL+VMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match: A0A5A7T0H1 (Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00200 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 6.7e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160

[Close]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match: A0A1S3B9T8 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487352 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 6.7e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160

[Close]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match: A0A6J1I076 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111468243 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.9e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match: A0A6J1EQX3 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111436878 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.9e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match: A0A6J1C1W6 (Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LOC111007197 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.3e-86
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK+
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of Clc06G13330 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 287.3 bits (734), Expect = 7.3e-78
Identity = 139/159 (87.42%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+K GF +GKDLV++VMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of Clc06G13330 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 282.3 bits (721), Expect = 2.4e-76
Identity = 134/159 (84.28%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           + LLTQLK+GF EGKD+V++VMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of Clc06G13330 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-70
Identity = 123/157 (78.34%), Postives = 144/157 (91.72%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIG 158
           D L  Q++ GF EGKD+V++VMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of Clc06G13330 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 220.7 bits (561), Expect = 8.4e-58
Identity = 104/127 (81.89%), Postives = 116/127 (91.34%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQL 128
           D L  QL
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:
BLAST of Clc06G13330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443857.11.4e-86100.00PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo] >XP_0388... [more]
XP_022930431.14.0e-86100.00eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0229... [more]
XP_022135162.16.9e-8698.75eukaryotic translation initiation factor 5A-2-like [Momordica charantia][more]
XP_004146682.11.2e-8598.75eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN65160.1 hypo... [more]
PSS08119.12.9e-8496.25Eukaryotic translation initiation factor 5A-2 [Actinidia chinensis var. chinensi... [more]
BLAST of Clc06G13330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AXJ42.3e-8492.50Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
P249223.0e-8494.34Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
P690395.1e-8493.08Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690405.1e-8493.08Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
P563371.5e-8393.08Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Clc06G13330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0H16.7e-87100.00Eukaryotic translation initiation factor 5A OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B9T86.7e-87100.00Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487... [more]
A0A6J1I0761.9e-86100.00Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1EQX31.9e-86100.00Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1C1W63.3e-8698.75Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Clc06G13330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G13950.17.3e-7887.42eukaryotic elongation factor 5A-1 [more]
AT1G69410.12.4e-7684.28eukaryotic elongation factor 5A-3 [more]
AT1G26630.11.1e-7078.34Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
AT1G26630.28.4e-5881.89Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
e-value: 1.6E-33
score: 127.3
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
e-value: 2.7E-28
score: 97.9
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..157
e-value: 1.1E-66
score: 221.1
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 18..153
e-value: 4.2E-41
score: 137.8
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..156
NoneNo IPR availableGENE3D2.40.50.140coord: 86..159
e-value: 6.0E-34
score: 117.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..156
NoneNo IPR availableCDDcd04468S1_eIF5Acoord: 86..156
e-value: 1.13248E-30
score: 103.771
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..85
e-value: 5.6E-43
score: 146.7
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..93
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 86..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G13330.1Clc06G13330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding